Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MST1L	0	ucsc.edu;bcgsc.ca	37	1	17084768	17084768	+	Missense_Mutation	SNP	G	G	C	rs2092129	bycluster;byfrequency	TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	.	.	.	.	GACCCCGCGCAGA		122	13	0.11	168	4	0.0238095238				5	1	0.20			
EPB41	2035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29314195	29314195	+	Silent	SNP	A	A	G	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	EPB41_ENST00000343067,NS,carcinoma,+2,1	EPB41_ENST00000343067	NM_203343	exon2	c.A246G	p.L82L	ACGACTATTCTCC		401	47	0.12	315	0	0		2	1	63	9	0.14			
TPR	7175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186283154	186283154	+	Silent	SNP	C	C	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_003292	exon51	c.G7041A	p.V2347V	ATGGCTCACACCT		105	15	0.14	84	0	0				448	75	0.17			
NMT2	9397	broad.mit.edu;mdanderson.org	37	10	15210588	15210588	+	Silent	SNP	C	C	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	NMT2	NM_004808	exon1	c.G24A	p.A8A	GCTGGCCGCAGAC		49	3	0.06	31	0	0		44		39	11	0.28			
CCSER2	54462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	86131820	86131820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_018999	exon2	c.G1012A	p.G338R	GTTGATGGAAATA		114	17	0.15	118	0	0				40	8	0.20			
C11orf35	256329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	557032	557032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_173573	exon8	c.G779A	p.R260Q	TGATGCCGCTCGG		37	6	0.16	41	0	0				4	1	0.25			
DCDC5	100506627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	30937241	30937241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_020869	exon8	c.G791T	p.S264I	AATTTACTATGCT		125	35	0.28	127	0	0				0	0				
FAT3	120114	mdanderson.org	37	11	92257930	92257930	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001008781	exon2	c.G3423T	p.V1141V	AGATGTGAATGAC		56	3	0.05	130	0	0				0	0				
CWF19L2	143884	broad.mit.edu;mdanderson.org	37	11	107309827	107309827	+	Nonsense_Mutation	SNP	G	G	T	rs141170726	alternate_allele	TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	CWF19L2_ENST00000282251,NS,carcinoma,+1,2	CWF19L2	NM_152434	exon6	c.C653A	p.S218X	GTAATCGATGACA		40	3	0.08	80	1	0.0125		135	2	6	0	0.00			
DSCAML1	57453	mdanderson.org	37	11	117651489	117651489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_020693	exon2	c.T263C	p.V88A	TCATTTACAAAGT		8	1	0.13	16	0	0				1	0	0.00			
OR10S1	219873	mdanderson.org	37	11	123848041	123848041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001004474	exon1	c.T358A	p.F120I	CCAGAAAGTGGAA		53	3	0.06	91	0	0				0	0				
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2908333	2908333	+	Silent	SNP	G	G	C	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_002014	exon5	c.G594C	p.L198L	GAACCTGGATCTG		109	19	0.17	52	0	0				2602	473	0.18			
NCOR2	9612	mdanderson.org	37	12	124887102	124887102	+	Silent	SNP	C	C	T	rs7488825	bycluster;alternate_allele	TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_006312	exon16	c.G1488A	p.Q496Q	TTGTTGCTGCTGC		56	5	0.09	55	0	0				26	0	0.00			
USP12	219333	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	27664080	27664081	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	USP12	NM_182488	exon6	c.674_675del	p.225_225del	CTGCACAGAGTTT		225	40	0.18	263	0	0		35		34	0	0.00			
.	0	broad.mit.edu	37	14	20122481	20122482	+	RNA	INS	-	-	A	rs368043035		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	.	.	.	.	GAAGTGCAAAAAA		9	4	0.44	6	0	0				0	0				
LTB4R2	56413	mdanderson.org	37	14	24780613	24780613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_019839	exon2	c.C743T	p.A248V	TGCAGGCGGTCGC		23	2	0.09	18	0	0				13	0	0.00			
BCL11B	64919	mdanderson.org	37	14	99641140	99641140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_138576	exon4	c.G2033A	p.S678N	CCGGGGCTGGGCA		20	2	0.10	25	0	0				1	0	0.00			
HERC2P3	0	broad.mit.edu	37	15	20613289	20613292	+	RNA	DEL	AGAA	AGAA	-	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	AGAA	AGAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	HERC2P3	.	.	.	.	ACTGTTAGAAAGA		6	2	0.33	4	0	0		53		1	0	0.00			
ATP2A1	487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28914470	28914470	+	Splice_Site	SNP	T	T	A	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_173201	exon20	c.2862+2T>A	.	TGCCGGTGAGGTT		51	13	0.25	46	0	0				5	5	1.00			
ZNF668	79759	mdanderson.org	37	16	31075770	31075770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001172669	exon3	c.A80G	p.E27G	GCAGCCTCCACTT		25	2	0.08	32	0	0				29	0	0.00			
LDHD	197257	mdanderson.org	37	16	75148547	75148547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_194436	exon5	c.C506T	p.A169V	CCGGTGGCCGCCA		23	2	0.09	12	0	0				3	0	0.00			
PRDM7	11105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	90124710	90124710	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	PRDM7_ENST00000449207,NS,carcinoma,0,1	PRDM7_ENST00000449207	NM_001098173	exon10	c.G1466C	p.G489A	TTTGGACCTTTCT		97	32	0.33	96	0	0		0	1	2	2	1.00			
RABEP1	9135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5212059	5212059	+	Silent	SNP	T	T	C	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_004703	exon2	c.T105C	p.L35L	GCAGCTTGAACAA		382	56	0.15	430	0	0				45	12	0.27			
GPS2	2874	mdanderson.org	37	17	7217005	7217005	+	Silent	SNP	T	T	A	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_004489	exon7	c.A516T	p.A172A	TGTCCCTGCAAAA		51	4	0.08	89	0	0				208	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		207	11	0.05	257	12	0.046692607				43	15	0.35			
FLJ36000	0	hgsc.bcm.edu	37	17	21904869	21904869	+	RNA	SNP	A	A	G	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	.	.	.	.	ACGGCAACAAGCC		57	8	0.14	74	0	0				7	0	0.00			
SPAG5	10615	mdanderson.org	37	17	26912638	26912638	+	Missense_Mutation	SNP	C	C	T	rs146987463		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_006461	exon8	c.G1774A	p.A592T	GGCTGGCGTGTGC		52	3	0.06	58	0	0	0			137	0	0.00			
TBC1D29	26083	hgsc.bcm.edu	37	17	28890347	28890347	+	Silent	SNP	A	A	G	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_015594	exon5	c.A357G	p.Q119Q	AGGACAACAAGCC		95	4	0.04	156	0	0				5	0	0.00			
LRRC37BP1	0	broad.mit.edu	37	17	28960373	28960381	+	RNA	DEL	GAACAGAAT	GAACAGAAT	-	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	GAACAGAAT	GAACAGAAT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	.	.	.	.	AACATGGAACAGA		179	18	0.10	210	0	0				28	0	0.00			
CDK12	51755	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	37627847	37627850	+	Frame_Shift_Del	DEL	ACTC	ACTC	-	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	ACTC	ACTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	CDK12	NM_016507	exon2	c.1761_1764del	p.587_588del	CCTTCTACTCACT		273	85	0.31	242	0	0		161		44	0	0.00			
KRT19	3880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39680453	39680453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_002276	exon5	c.C890T	p.T297I	AGGTCAGTAACCT		113	30	0.27	140	0	0				9	4	0.44			
KRT9	3857	broad.mit.edu	37	17	39728194	39728194	+	Silent	SNP	A	A	C	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	KRT9	NM_000226	exon1	c.T51G	p.G17G	CCCGCCACCCCCG		42	17	0.40	40	13	0.325		78		0	0				
NAGLU	4669	mdanderson.org	37	17	40696174	40696174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_000263	exon6	c.G2150T	p.S717I	ACCCCAGCCAGCC		49	3	0.06	38	0	0				73	0	0.00			
ERN1	2081	mdanderson.org	37	17	62144207	62144207	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001433	exon8	c.C666A	p.Y222X	GGAGGCGTAGTTT		132	5	0.04	122	0	0				4	0	0.00			
AMZ2P1	0	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	A	G	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	.	.	.	.	TTCCACAAGTCTC		104	3	0.03	93	0	0				44	0	0.00			
SLC26A11	284129	mdanderson.org	37	17	78195433	78195433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_173626	exon3	c.G74T	p.C25F	GCTGCTGCTCCCC		29	4	0.14	24	0	0				37	0	0.00			
TXNDC2	84203	mdanderson.org	37	18	9887407	9887407	+	Missense_Mutation	SNP	G	G	A	rs148775952		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001098529	exon2	c.G931A	p.E311K	CCCAAGGAGGGTG		113	6	0.05	99	1	0.0101010101				0	0				
MUM1	84939	mdanderson.org	37	19	1360218	1360218	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_032853	exon5	c.G301T	p.E101X	CTGAGCGAGGGCT		104	5	0.05	78	0	0				176	0	0.00			
APBA3	9546	mdanderson.org	37	19	3751225	3751225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_004886	exon10	c.G1618A	p.A540T	TGCGGGCGTGTGG		41	3	0.07	25	0	0				60	0	0.00			
DNM2	1785	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10940946	10940946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001005361	exon20	c.G2435T	p.R812L	CATCCCGGCCTGG		177	20	0.11	96	0	0				319	52	0.16			
ZNF85	7639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21132152	21132152	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001256171	exon5	c.A922T	p.I308L	CATAAGATAATTC		99	14	0.14	69	0	0				40	21	0.53			
RHPN2	85415	mdanderson.org	37	19	33535186	33535186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_033103	exon2	c.C154T	p.R52W	TCATCCGCACGGC		146	5	0.03	106	0	0				23	0	0.00			
FFAR1	2864	mdanderson.org	37	19	35843316	35843316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_005303	exon1	c.G862T	p.V288L	AAGACAGTGTGTG		36	3	0.08	31	0	0				0	0				
SIRT2	22933	broad.mit.edu	37	19	39369886	39369886	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	SIRT2	NM_012237	exon16	c.T1079G	p.V360G	TTGGGGACCCCCG		69	11	0.16	42	4	0.0952380952		29		56	1	0.02			
KLK11	11012	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51526395	51526395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	KLK11	NM_144947	exon5	c.A649G	p.T217A	CCATGGTGTCTGT		147	14	0.10	83	1	0.0120481928		28		0	0				
EML6	400954	broad.mit.edu	37	2	55106753	55106753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	EML6	NM_001039753	exon16	c.A2414G	p.K805R	GGAAAAAGGGAGA		222	4	0.02	226	0	0		85		0	0				
GPR39	2863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	133174783	133174783	+	Silent	SNP	G	G	A	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001508	exon1	c.G168A	p.Q56Q	CACCCAGGTGCTG		186	21	0.11	154	0	0				57	7	0.12			
RAPGEF4-AS1	91149	hgsc.bcm.edu	37	2	173600785	173600785	+	RNA	SNP	C	C	G	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	.	.	.	.	AGCTCGCCGGGGG		28	5	0.18	37	0	0				1	0	0.00			
BMPR2	659	ucsc.edu	37	2	203420129	203420129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	BMPR2	NM_001204	exon12	c.G1741A	p.E581K	ATAGGGGAAAAAA		163	3	0.02	142	1	0.0070422535		142		55	7	0.13	rescued with RNA-seq		
TTLL4	9654	broad.mit.edu	37	2	219612368	219612368	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	TTLL4	NM_014640	exon11	c.G2298T	p.R766R	CCTGCGGATCTAT		253	5	0.02	209	0	0		96		156	0	0.00			
SNPH	9751	mdanderson.org	37	20	1285979	1285979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_014723	exon6	c.G766T	p.D256Y	CGGACGGACGCGC		38	3	0.08	40	0	0				27	0	0.00			
NCOA6	23054	hgsc.bcm.edu	37	20	33345720	33345721	+	In_Frame_Ins	INS	-	-	TGC	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	NCOA6	NM_014071	exon7	c.831_832insGCA	p.Q277delinsQQ	CTGTTGTTGCTGC		99	11	0.11	58	0	0		219		23	0	0.00			
ARVCF	421	broad.mit.edu	37	22	19964943	19964943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	ARVCF	NM_001670	exon9	c.C1865A	p.A622D	CCTTTGGCCTTCT		237	5	0.02	167	0	0		54		45	0	0.00			
SEZ6L	23544	broad.mit.edu	37	22	26688869	26688869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	SEZ6L	NM_001184777	exon2	c.G592T	p.A198S	ACACCCGCACCCC		210	4	0.02	178	0	0		174		3	0	0.00			
APOBEC3A	200315	hgsc.bcm.edu	37	22	39357586	39357586	+	Silent	SNP	T	T	C	rs202076860	bycluster	TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	APOBEC3A,caecum,carcinoma,+1,1	APOBEC3A	NM_145699	exon3	c.T369C	p.R123R	ACTGCGTATCTTC		54	6	0.11	78	1	0.0128205128	0.001	1	1	2	0	0.00			
DCP1A	55802	mdanderson.org	37	3	53376192	53376192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	DCP1A,NS,carcinoma,0,1	DCP1A	NM_018403	exon3	c.C283A	p.L95I	ACAGAAGAAATGG		59	3	0.05	65	0	0		0	1	16	0	0.00			
PARP14	54625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122420415	122420415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_017554	exon6	c.A3014G	p.K1005R	GGGAAAAAGGAAG		137	23	0.17	119	0	0				6	0	0.00			
FAM43A	131583	mdanderson.org	37	3	194407933	194407933	+	Silent	SNP	C	C	A	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_153690	exon1	c.C378A	p.R126R	GGAGCGCGCGCTG		26	2	0.08	22	0	0				11	0	0.00			
PITX1	5307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	134364535	134364535	+	Silent	SNP	C	C	G	rs61751190	bycluster;alternate_allele	TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_002653	exon3	c.G879C	p.S293S	AAACGACGAGTGC		62	18	0.29	72	0	0				0	0				
PPP2R2B	5521	mdanderson.org	37	5	146070770	146070770	+	Missense_Mutation	SNP	C	C	T	rs374783257		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	PPP2R2B_ENST00000508545,NS,carcinoma,0,8	PPP2R2B_ENST00000508545	NM_181675	exon5	c.G686A	p.R229H	TTATCACGCTCGC		44	3	0.07	63	0	0		0	8	0	0				
BTN2A3P	54718	mdanderson.org	37	6	26422353	26422353	+	RNA	SNP	C	C	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	BTN2A3,NS,carcinoma,0,9	BTN2A3	.	.	.	.	ATGGAACCAGCTG		101	5	0.05	123	0	0		0	9	3	0	0.00			
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56368856	56368856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_015548	exon59	c.C11636T	p.A3879V	ATTGAAGCTAATT		124	14	0.11	129	0	0				72	10	0.14			
ZNF853	54753	mdanderson.org	37	7	6661823	6661823	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_017560	exon3	c.C1201T	p.Q401X	GAGGTGCAGCTGG		19	2	0.11	13	0	0				16	0	0.00			
ETV1	2115	broad.mit.edu	37	7	13949310	13949310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	ETV1_ENST00000403527,NS,carcinoma,0,2	ETV1	NM_004956	exon11	c.A887G	p.K296R	GGGCCCTTTTCAA		151	4	0.03	129	0	0		138	2	47	0	0.00			
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51096836	51096836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_015198	exon10	c.G1957T	p.G653C	CACAGCCATACAC		270	87	0.32	176	0	0				43	12	0.28			
.	0	broad.mit.edu	37	7	65889152	65889152	+	RNA	DEL	T	T	-	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	.	.	.	.	AGCTAATTTTTTT		6	2	0.33	7	0	0				8	0	0.00			
FAM185A	222234	broad.mit.edu	37	7	102401776	102401776	+	Silent	SNP	T	T	G	rs2537454		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	FAM185A	NM_001145268	exon4	c.T711G	p.G237G	AGATGGTTTGCTG		610	5	0.01	465	2	0.0043010753		10		4	0	0.00			
ZNF277	11179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	111980956	111980956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_021994	exon11	c.G1039A	p.V347I	AAACTGGTCAATT		233	54	0.23	228	0	0				61	21	0.34			
NOS3	4846	broad.mit.edu;mdanderson.org	37	7	150698654	150698654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	NOS3	NM_001160111	exon11	c.C1451T	p.A484V	GGAGTGCCGCCAA		121	6	0.05	86	0	0		131		4	0	0.00			
ERICH1	157697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	642586	642586	+	Nonsense_Mutation	SNP	G	G	A	rs150434775	bycluster	TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_207332	exon3	c.C196T	p.R66X	GCCGTCGGGCAGT		451	93	0.21	333	0	0	0			44	2	0.05			
FOXD4	2298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	116901	116901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_207305	exon1	c.C1219G	p.L407V	ATGTCAGCCCAGA		181	14	0.08	180	0	0				0	0				
ABCA2	20	mdanderson.org	37	9	139917217	139917217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_212533	exon5	c.C466A	p.Q156K	GATGCTGGCGTAG		36	3	0.08	29	0	0				4	0	0.00			
tRNA-Tyr	0	hgsc.bcm.edu;broad.mit.edu	37	MT	5881	5881	+	RNA	SNP	G	G	A	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	.	.	.	.	CACTCAGCCATTT		115	11	0.10	108	0	0				0	0				
CHRDL1	91851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109924730	109924730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001143981	exon10	c.A1136G	p.H379R	CAAACGTGGACCT		164	79	0.48	154	0	0				11	6	0.55			
ARHGAP36	158763	mdanderson.org	37	X	130219013	130219013	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_144967	exon7	c.G930T	p.L310L	TGATCTGTACATG		56	3	0.05	56	1	0.0178571429				6	0	0.00			
.	100130277	bcgsc.ca	37	Y	10029174	10029174	+	RNA	SNP	G	G	T	rs77341040		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	.	.	.	.	CAGTGGGACAGTA		31	8	0.26	41	3	0.0731707317				6	0	0.00			
