Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
DAB1	1600	mdanderson.org	37	1	57480875	57480875	+	Silent	SNP	C	C	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_021080	exon14	c.G1125A	p.L375L	AGCTGGCAAAGGC		49	3	0.06	78	0	0				1	0	0.00			
RNPC3	55599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	104068861	104068861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_017619	exon1	c.G169A	p.V57I	GTGCGGGTCCTGT		117	17	0.15	162	0	0				6	1	0.17			
NHLH2	4808	broad.mit.edu	37	1	116383281	116383281	+	Translation_Start_Site	SNP	C	C	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	NHLH2	.	.	.	.	CCGCTCCTATCGT		88	4	0.05	80	1	0.0125		8		0	0				
ZNF697	90874	broad.mit.edu;mdanderson.org	37	1	120165996	120165996	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	ZNF697	NM_001080470	exon3	c.G970C	p.E324Q	AGGCCTCGCCGCA		17	3	0.18	8	0	0		26		2	0	0.00			
NUDT17	200035	hgsc.bcm.edu	37	1	145589328	145589328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	NUDT17,NS,carcinoma,+2,1	NUDT17	NM_001012758	exon1	c.G100A	p.G34R	ACGTCCCGAGCCC		73	4	0.05	80	0	0		2	1	2	0	0.00			
OR13A1	79290	mdanderson.org	37	10	45799291	45799291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001004297	exon4	c.C580A	p.H194N	AGAAATGGATAAT		20	2	0.10	41	0	0				0	0				
NOC3L	64318	bcgsc.ca	37	10	96094473	96094473	+	Missense_Mutation	SNP	G	G	T	rs201691751	alternate_allele	TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	NOC3L	NM_022451	exon20	c.C2192A	p.S731Y	GTAGCAGATCTAA		56	4	0.07	53	0	0		67		68	0	0.00			
C10orf76	79591	mdanderson.org	37	10	103769735	103769735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_024541	exon12	c.C877A	p.Q293K	CTTACTGTACTGA		50	3	0.06	66	1	0.0151515152				17	1	0.06			
CDHR5	53841	broad.mit.edu	37	11	621227	621227	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	CDHR5	NM_021924	exon7	c.A642C	p.E214D	GCTGGGTTCCACA		87	11	0.13	100	9	0.09		77		7	0	0.00			
RAB3IL1	5866	ucsc.edu;bcgsc.ca	37	11	61675532	61675532	+	Silent	SNP	C	C	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	RAB3IL1,NS,carcinoma,-1,1	RAB3IL1	NM_001271686	exon2	c.G399A	p.A133A	CTTCTGCGCTCTG		30	4	0.13	38	0	0		39	1	24	0	0.00			
ANKRD13D	338692	mdanderson.org	37	11	67066580	67066580	+	Silent	SNP	C	C	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_207354	exon7	c.C783T	p.S261S	TGTTAGCGGCTAC		50	3	0.06	66	0	0				52	0	0.00			
HEPHL1	341208	mdanderson.org	37	11	93836181	93836181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	HEPHL1,NS,carcinoma,-1,1	HEPHL1	NM_001098672	exon15	c.G2677T	p.V893L	AACTTTGTGAAGG		53	3	0.06	77	0	0		-1	1	0	0				
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108139142	108139142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_000051	exon18	c.A2644G	p.I882V	GGTGCCATTAATC		87	26	0.30	72	0	0				3	1	0.33			
CHD4	1108	hgsc.bcm.edu	37	12	6711150	6711150	+	Missense_Mutation	SNP	C	C	A	rs150832622	bycluster;by1000genomes	TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001273	exon4	c.G414T	p.E138D	ATCCTCCTCCTCC		95	4	0.04	33	0	0	0.002			104	0	0.00			
.	0	broad.mit.edu	37	12	52493869	52493869	+	RNA	DEL	C	C	-	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	.	.	.	.	TCCTCTCCCCCCC		6	3	0.50	4	0	0				0	0				
KRT3	3850	hgsc.bcm.edu	37	12	53183951	53183951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	KRT3,rectum,carcinoma,0,1	KRT3	NM_057088	exon9	c.G1762A	p.G588S	CAAAGCCGCTGCC		25	6	0.24	20	0	0		0	1	0	0				
ITGB7	3695	mdanderson.org	37	12	53586314	53586314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_000889	exon14	c.C1955A	p.A652E	CACTCTGCACAGT		40	3	0.08	47	0	0				57	0	0.00			
TAOK3	51347	broad.mit.edu;mdanderson.org	37	12	118682740	118682740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	TAOK3	NM_016281	exon4	c.G151A	p.A51T	TAATTGCCACCAC		62	4	0.06	59	0	0		151		13	0	0.00			
EXOC3L4	91828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	103568544	103568544	+	Nonsense_Mutation	SNP	G	G	T	rs373034943	alternate_allele	TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001077594	exon2	c.G484T	p.E162X	GTGGCCGAGAAGG		70	24	0.34	62	0	0				5	0	0.00			
CYFIP1	23191	broad.mit.edu;mdanderson.org	37	15	22954288	22954288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	CYFIP1	NM_014608	exon14	c.G1438T	p.V480F	CACACCGTCTATG		92	4	0.04	115	0	0		159		66	0	0.00			
.	0	bcgsc.ca	37	15	23407031	23407031	+	Missense_Mutation	SNP	T	T	C	rs376343793		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	.	.	.	.	TCCTGCTTCCACA		164	14	0.09	195	3	0.0153846154				0	0				
FMN1	342184	mdanderson.org	37	15	33261197	33261197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001103184	exon4	c.C2036A	p.P679Q	GGTAGCGGTGGCC		27	2	0.07	38	0	0				1	0	0.00			
VPS13C	54832	mdanderson.org	37	15	62276086	62276086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_020821	exon20	c.C1847A	p.P616Q	TCCTCCGGATTGG		59	3	0.05	84	0	0				2	0	0.00			
SOX8	30812	mdanderson.org	37	16	1032207	1032207	+	Silent	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_014587	exon1	c.G285A	p.A95A	CGGCGCGCTCAAA		13	2	0.15	9	0	0				4	0	0.00			
PPL	5493	mdanderson.org	37	16	4945266	4945266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_002705	exon11	c.A1238G	p.E413G	ACCTGCTCCCCCT		48	3	0.06	57	0	0				13	0	0.00			
LOC653786	0	broad.mit.edu	37	16	22579566	22579569	+	RNA	DEL	ATTC	ATTC	-	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	ATTC	ATTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	.	.	.	.	GGGTTAATTCATC		88	11	0.13	99	6	0.0606060606				0	0				
NOD2	64127	mdanderson.org	37	16	50741855	50741855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_022162	exon3	c.G630T	p.L210F	CCCATTGGCCCTG		92	4	0.04	112	0	0				3	0	0.00			
RRAD	6236	mdanderson.org	37	16	66958768	66958768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_004165	exon2	c.C315A	p.S105R	CAGGGCGCTCTTG		14	2	0.14	15	0	0				140	0	0.00			
CCDC43	124808	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	42759494	42759494	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001099225	exon3	c.C305G	p.A102G	GCAATGGCCTGTA		172	8	0.05	157	0	0				55	1	0.02			
HEXIM1	0	broad.mit.edu	37	17	43229643	43229644	+	RNA	INS	-	-	C	rs146564091	bycluster;by1000genomes	TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	HEXIM1	.	.	.	.	TTTCTTTATTTTT		7	2	0.29	6	0	0		25		0	0				
TBC1D3P1-DHX40P1	653645	bcgsc.ca	37	17	58066651	58066651	+	RNA	SNP	C	C	T	rs376360537		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	.	.	.	.	GTAAAGCTGTTTA		433	25	0.06	409	7	0.0171149144				1	1	1.00			
ZFR2	23217	mdanderson.org	37	19	3831689	3831689	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_015174	exon4	c.C567A	p.P189P	GTAGGAGGGCGGG		26	3	0.12	36	0	0				0	0				
PRR22	163154	mdanderson.org	37	19	5783886	5783886	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001134316	exon3	c.C372A	p.A124A	CCCCGGGGCCTTG		36	3	0.08	29	0	0				35	0	0.00			
PRKCSH	5589	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	11558391	11558391	+	Silent	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	PRKCSH,NS,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G987A	p.E329E	AGAAGAGGAGGAG		77	5	0.06	67	0	0		0	1	101	3	0.03			
CCDC105	126402	mdanderson.org	37	19	15132449	15132449	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	CCDC105,NS,carcinoma,0,2	CCDC105	NM_173482	exon5	c.G1063T	p.G355X	ACGTTAGGACTGA		55	3	0.05	58	0	0		0	2	0	0				
IFI30	10437	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	18288094	18288094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	IFI30	NM_006332	exon5	c.G628A	p.V210I	GTCACCGTCAATG		113	6	0.05	136	0	0		12		1685	0	0.00			
ZNF573	126231	hgsc.bcm.edu	37	19	38260728	38260728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001172690	exon4	c.C212A	p.S71Y	GAAATGGAATGTC		98	4	0.04	111	0	0				0	0				
OPA3	80207	mdanderson.org	37	19	46087973	46087973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001017989	exon1	c.G50A	p.R17Q	ACCTGCCGGATGC		48	3	0.06	60	0	0				23	0	0.00			
HSD17B14	51171	mdanderson.org	37	19	49318335	49318335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_016246	exon6	c.G433A	p.A145T	CGATTGCCCCCAC		50	3	0.06	85	0	0				30	0	0.00			
SYT3	84258	hgsc.bcm.edu;broad.mit.edu	37	19	51128793	51128793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_032298	exon6	c.C1431A	p.S477R	CCCCTCGCTGATC		97	4	0.04	81	0	0				8	0	0.00			
ZNF551	90233	broad.mit.edu	37	19	58198322	58198322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	ZNF551	NM_138347	exon3	c.G679A	p.E227K	TGGGGTGAATACA		44	5	0.11	57	4	0.0701754386		65		10	0	0.00			
EVA1A	84141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	75720472	75720472	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_032181	exon4	c.G349T	p.E117X	CCAGCTCCTCCGC		154	34	0.22	170	0	0				5	1	0.20			
CCNT2	905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135694499	135694499	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_058241	exon3	c.G329C	p.C110S	ATGCTTGTCTTCA		112	10	0.09	90	0	0				26	7	0.27			
LCT	3938	broad.mit.edu	37	2	136575423	136575423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	LCT	NM_002299	exon6	c.G1195A	p.G399R	AGCCTCCTTCCAC		72	3	0.04	72	0	0		309		0	0				
SIGLEC1	6614	mdanderson.org	37	20	3673619	3673619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_023068	exon14	c.C3668A	p.T1223N	CGCAGGGTGTTGG		41	3	0.07	48	0	0				36	0	0.00			
MMP11	4320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24124604	24124604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_005940	exon7	c.C1267A	p.P423T	CCCGTGCCCCGCA		81	14	0.17	86	0	0				94	21	0.22			
SH3BP1	23616	mdanderson.org	37	22	38038946	38038946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_018957	exon5	c.G329A	p.R110H	TGGCCCGCATCCT		30	3	0.10	49	0	0				82	1	0.01			
CELSR1	9620	mdanderson.org	37	22	46931226	46931226	+	Silent	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_014246	exon1	c.C1842T	p.G614G	GCTGCCGCCCCCC		22	3	0.14	35	0	0				5	0	0.00			
GRAMD4	23151	broad.mit.edu;mdanderson.org	37	22	47022780	47022780	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	GRAMD4,colon,carcinoma,+1,1	GRAMD4	NM_015124	exon1	c.G84T	p.S28S	TGCCTCGGACACC		77	4	0.05	107	0	0		53	1	10	0	0.00			
NT5DC2	64943	mdanderson.org	37	3	52558490	52558490	+	Missense_Mutation	SNP	C	C	T	rs200568224		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	NT5DC2,NS,carcinoma,-1,1	NT5DC2	NM_001134231	exon14	c.G1670A	p.R557H	CCTCAGCGGATGT		32	3	0.09	70	0	0		-1	1	430	0	0.00			
ADCY5	111	mdanderson.org	37	3	123071367	123071367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_183357	exon2	c.C1196A	p.P399Q	TCAGCCGGATAGT		44	3	0.07	42	0	0				3	0	0.00			
FAM194A	131831	mdanderson.org	37	3	150421527	150421527	+	Silent	SNP	C	C	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_152394	exon1	c.G159A	p.E53E	CACCTCCTCCTCC		133	9	0.07	117	0	0				0	0				
CPN2	1370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	194062671	194062671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	CPN2,NS,carcinoma,0,1	CPN2	NM_001080513	exon2	c.C761A	p.T254K	AGGTGCGTGATGG		158	18	0.11	126	0	0		0	1	3	0	0.00			
DOK7	285489	mdanderson.org	37	4	3494873	3494873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_173660	exon7	c.C1160A	p.T387N	TGTGCACCTGCCT		33	3	0.09	39	0	0				1	0	0.00			
OTUD4	54726	bcgsc.ca	37	4	146059006	146059006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	OTUD4,NS,carcinoma,0,5	OTUD4	NM_001102653	exon21	c.C2726T	p.T909I	GGCACAGTTTCTC		116	7	0.06	186	3	0.0161290323		120	5	48	0	0.00			
BRD8	10902	mdanderson.org	37	5	137513290	137513290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_139199	exon2	c.C86A	p.S29Y	ACAGAAGATGCTA		53	3	0.06	56	0	0				68	0	0.00			
TNXB	7148	hgsc.bcm.edu	37	6	32024600	32024600	+	Missense_Mutation	SNP	T	T	C	rs369180703		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	TNXB_ENST00000375247,NS,carcinoma,0,2	TNXB_ENST00000375247	NM_019105	exon23	c.A7906G	p.M2636V	CTGTCATGGTCAG		120	5	0.04	133	2	0.015037594		0	2	22	0	0.00			
ETV7	51513	mdanderson.org	37	6	36343801	36343801	+	Missense_Mutation	SNP	C	C	T	rs145194281	bycluster;by1000genomes	TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	ETV7,caecum,carcinoma,0,1	ETV7	NM_016135	exon3	c.G154A	p.A52T	ACAGTGCGGGCTG		19	2	0.11	15	0	0		0	1	4	0	0.00			
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111714087	111714087	+	Silent	SNP	T	T	C	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_002912	exon5	c.A654G	p.E218E	TGGTATTTCATCT		140	38	0.27	174	0	0				1	0	0.00			
TXLNB	167838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139569008	139569008	+	Silent	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_153235	exon8	c.C1116T	p.S372S	TAGTGTGCTCTGG		143	31	0.22	197	0	0				0	0				
UTRN	7402	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	144780096	144780096	+	Silent	SNP	C	C	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	UTRN	NM_007124	exon19	c.C2475T	p.S825S	CACTTCCATTTCT		114	34	0.30	133	2	0.015037594		327		3	0	0.00			
SYNE1	23345	broad.mit.edu;mdanderson.org	37	6	152631005	152631005	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	SYNE1	NM_182961	exon90	c.C17167T	p.Q5723X	TGTGCTGCAGCCG		46	4	0.09	49	0	0		3227		3	0	0.00			
GRB10	2887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50671755	50671755	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_005311	exon14	c.A1484T	p.H495L	CTCCCGTGAAACC		77	8	0.10	85	0	0				55	15	0.27			
DPY19L2P2	0	broad.mit.edu	37	7	102883442	102883442	+	RNA	SNP	A	A	G	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	.	.	.	.	CTCTCCATGGTTG		349	5	0.01	305	0	0				0	0				
.	0	broad.mit.edu	37	8	11114186	11114186	+	RNA	DEL	A	A	-	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	.	.	.	.	AGCCTTAAAAAAA		6	2	0.33	7	0	0				0	0				
PHF20L1	51105	broad.mit.edu	37	8	133826909	133826909	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	PHF20L1	NM_016018	exon10	c.958delA	p.K320fs	AGTCAGAAAAAAA		243	7	0.03	230	0	0		129		29	0	0.00			
PSIP1	11168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	15472670	15472672	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	CTG	CTG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	PSIP1	NM_001128217	exon10	c.936_938del	p.312_313del	TTCGATCTGCTGC		201	43	0.21	170	0	0		93		403	0	0.00			
AQP7	364	mdanderson.org	37	9	33385287	33385287	+	Missense_Mutation	SNP	T	T	C	rs74557595	bycluster	TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001170	exon8	c.A745G	p.N249D	CCCCATTGCTGCA		15	2	0.13	13	0	0				2	0	0.00			
RNR1	6052	hgsc.bcm.edu	37	MT	1024	1024	+	RNA	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	.	.	.	.	GACTACGAAAGTG		33	27	0.82	126	0	0				0	0				
SYTL4	94121	mdanderson.org	37	X	99956557	99956557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001129896	exon4	c.C223A	p.P75T	TTTTGGGACTCAA		45	3	0.07	78	0	0				1	0	0.00			
