Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
ARHGEF16	27237	mdanderson.org	37	1	3397126	3397126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_014448	exon15	c.G2105T	p.R702L	TGGAGCGTCTGCG		20	4	0.20	33	0	0				52	0	0.00			
CASZ1	54897	mdanderson.org	37	1	10699273	10699273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001079843	exon21	c.C5006A	p.A1669E	CCAGCTGCGGCGG		14	2	0.14	13	0	0				0	0				
KIAA2013	90231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11982843	11982843	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_138346	exon2	c.T1737G	p.H579Q	CTCATCATGGGCC		237	72	0.30	195	0	0				374	120	0.32			
SPEN	23013	hgsc.bcm.edu	37	1	16174549	16174549	+	RNA	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	.	.	.	.	TCGCCGGCACGCC		100	13	0.13	104	0	0				15	2	0.13			
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T	rs75226570		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	.	.	.	.	AACTTACTGTTGT		50	4	0.08	55	0	0				1	0	0.00			
DNM3	26052	hgsc.bcm.edu	37	1	171810829	171810829	+	Silent	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	DNM3,caecum,carcinoma,+1,1	DNM3	NM_001136127	exon1	c.G33T	p.P11P	GATCCCGCTGGTG		47	2	0.04	63	0	0		1	1	2	0	0.00			
FMN2	56776	mdanderson.org	37	1	240371244	240371244	+	Silent	SNP	G	G	A	rs200328010		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	FMN2,right_upper_lobe,carcinoma,+1,1	FMN2	NM_020066	exon5	c.G3132A	p.P1044P	CCCTCCGCCCCCA		58	7	0.12	76	2	0.0263157895	0.002	1	1	1	0	0.00			
KIF26B	55083	mdanderson.org	37	1	245851927	245851927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_018012	exon12	c.C5642T	p.P1881L	TCCCGCCGGCCAT		26	2	0.08	44	0	0				0	0				
SKIDA1	387640	mdanderson.org	37	10	21806056	21806056	+	Silent	SNP	G	G	A	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_207371	exon4	c.C696T	p.A232A	AGCAGCGGCGGCG		19	2	0.11	15	0	0				0	0				
PDE3B	5140	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	14666502	14666502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	PDE3B	NM_000922	exon1	c.G881T	p.R294M	GGAGGAGGTCCAG		79	5	0.06	132	0	0		98		5	0	0.00			
HNRNPKP3	0	broad.mit.edu	37	11	43283606	43283606	+	RNA	DEL	A	A	-	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	.	.	.	.	AAATGTAAAAAAA		12	4	0.33	6	0	0				2	0	0.00			
WNT11	7481	mdanderson.org	37	11	75905750	75905750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_004626	exon3	c.G458A	p.R153H	CCCCAGCGGTTCC		48	3	0.06	81	0	0				1	0	0.00			
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	85415906	85415906	+	Silent	SNP	G	G	T	rs374075595	alternate_allele	TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_206927	exon9	c.C3283A	p.R1095R	CCTTCCGCTTCAG		115	5	0.04	160	0	0				7	0	0.00			
DCP1B	196513	hgsc.bcm.edu	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	DCP1B,bladder,carcinoma,0,13	DCP1B	NM_152640	exon7	c.G756C	p.Q252H	CTGCTGCTGGTGG		55	3	0.05	26	0	0		0	13	128	1	0.01			
DDX11	1663	mdanderson.org	37	12	31255198	31255198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_030653	exon22	c.G2224A	p.A742T	AAGAGCGCACACC		375	16	0.04	203	0	0				307	9	0.03			
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	39735383	39735383	+	Silent	SNP	C	C	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	KIF21A,NS,carcinoma,0,2	KIF21A	NM_001173464	exon14	c.G1845A	p.E615E	CTCCTCCTCTTCT		146	6	0.04	136	0	0		0	2	17	0	0.00			
TESPA1	9840	broad.mit.edu	37	12	55354957	55354957	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001098815	exon10	c.C1562A	p.S521X	CTTCACGAGTCTT		125	4	0.03	143	0	0				8	0	0.00			
SPRYD4	283377	broad.mit.edu	37	12	56862413	56862413	+	Missense_Mutation	SNP	G	G	T	rs142431089	alternate_allele	TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	SPRYD4	NM_207344	exon1	c.G38T	p.R13L	TGTGCCGCTGGGG		114	4	0.04	74	0	0		13		28	0	0.00			
LTB4R	1241	broad.mit.edu	37	14	24785074	24785074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	LTB4R	NM_181657	exon2	c.T217C	p.F73L	GCTCCCTTTTTCC		88	3	0.03	123	0	0		18		9	0	0.00			
MESP2	145873	broad.mit.edu;mdanderson.org	37	15	90320173	90320173	+	Silent	SNP	A	A	G	rs113636330		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	MESP2	NM_001039958	exon1	c.A585G	p.G195G	GCAAGGACAGGGG		37	4	0.11	34	0	0		20		0	0				
UBN1	29855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4903071	4903071	+	Silent	SNP	C	C	G	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001079514	exon2	c.C153G	p.L51L	CACCCTCTTTGAA		71	9	0.13	89	0	0				57	17	0.30			
UBN1	29855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4927071	4927071	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001079514	exon16	c.C3224G	p.T1075R	TCGTCACAGGCCC		54	16	0.30	48	0	0				106	41	0.39			
.	0	broad.mit.edu	37	16	90162530	90162530	+	RNA	SNP	A	A	G	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	.	.	.	.	CTGAATATCAGCA		46	4	0.09	61	1	0.0163934426				18	1	0.06			
.	0	broad.mit.edu	37	17	17579770	17579771	+	RNA	DEL	TG	TG	-	rs72152573	alternate_allele	TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	.	.	.	.	CAAGGCTGTGTGT		12	4	0.33	10	0	0				0	0				
ABCA6	23460	broad.mit.edu	37	17	67124787	67124787	+	Silent	SNP	A	A	G	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	ABCA6	NM_080284	exon8	c.T1092C	p.P364P	GGCAAAAGGGCTA		146	4	0.03	176	0	0		210		0	0				
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1061799	1061799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_019112	exon41	c.G5482A	p.V1828M	CTGGGTGTGAATG		127	31	0.24	106	0	0				23	2	0.09			
FAM108A1	81926	hgsc.bcm.edu	37	19	1881263	1881263	+	Silent	SNP	G	G	A	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	FAM108A1,NS,carcinoma,0,2	FAM108A1	NM_031213	exon2	c.C303T	p.C101C	ATACATGCAGGAG		65	3	0.05	43	1	0.023255814		0	2	203	0	0.00			
EVI5L	115704	mdanderson.org	37	19	7927017	7927017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001159944	exon15	c.G1654T	p.A552S	CATCTGGCCCGCG		20	2	0.10	27	1	0.037037037				13	0	0.00			
ZNF441	126068	mdanderson.org	37	19	11891239	11891239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_152355	exon4	c.G600T	p.L200F	TAAGTTGTGTGGA		129	5	0.04	118	0	0				1	0	0.00			
MED26	9441	bcgsc.ca	37	19	16687978	16687978	+	Silent	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	MED26	NM_004831	exon3	c.C663A	p.I221I	GACGGGGATCTTG		84	5	0.06	87	0	0		25		40	0	0.00			
USHBP1	83878	mdanderson.org	37	19	17366295	17366295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_031941	exon10	c.C1591A	p.L531M	ACCGCAGCTGCTC		52	3	0.06	55	0	0				0	0				
CATSPERG	57828	mdanderson.org	37	19	38827887	38827887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_021185	exon2	c.G13T	p.A5S	GGCCCAGCCATGT		37	3	0.08	41	0	0				1	0	0.00			
AXL	558	bcgsc.ca	37	19	41745121	41745121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	AXL	NM_021913	exon9	c.A1187G	p.D396G	AGGGGGACGGGTC		72	4	0.06	70	2	0.0285714286		126		7	0	0.00			
CCDC97	90324	mdanderson.org	37	19	41825732	41825732	+	Silent	SNP	A	A	G	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_052848	exon3	c.A756G	p.E252E	AGAGGAAGAGGAG		21	2	0.10	24	0	0				69	0	0.00			
MYH14	79784	mdanderson.org	37	19	50781508	50781508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001145809	exon30	c.G3994T	p.A1332S	GAGAGGGCACGAG		30	3	0.10	38	0	0				8	0	0.00			
ARHGEF4	50649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	131675018	131675018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	ARHGEF4	.	.	.	.	GGCCAGGGTCCGC		138	32	0.23	149	1	0.0067114094		89		1	1	1.00			
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230663622	230663622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_004238	exon22	c.G3226A	p.A1076T	AGGCAGCCCTGGC		118	33	0.28	121	0	0				85	27	0.32			
STK25	10494	mdanderson.org	37	2	242437664	242437664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001271977	exon9	c.C1018A	p.H340N	AACTGTGCAGGGC		47	3	0.06	56	0	0				188	2	0.01			
MICAL3	57553	bcgsc.ca	37	22	18358228	18358228	+	Silent	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	MICAL3	NM_001136004	exon19	c.C2490A	p.S830S	GGAGTCGGAGGAG		43	4	0.09	73	0	0		53		0	0				
EMID1	129080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29627121	29627121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_133455	exon6	c.G578T	p.G193V	ATGGAGGCCTCCA		209	37	0.18	207	0	0				8	3	0.38			
SCN5A	6331	mdanderson.org	37	3	38592963	38592963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_198056	exon28	c.C4900A	p.L1634I	GTCTGAGGATGCG		52	3	0.06	99	0	0				2	0	0.00			
ZBTB47	92999	broad.mit.edu	37	3	42700893	42700893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	ZBTB47	NM_145166	exon2	c.A1046G	p.E349G	AGGAGGAGGGGGA		7	2	0.29	15	0	0		39		0	0				
DRD3	1814	mdanderson.org	37	3	113858539	113858539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_000796	exon5	c.C531A	p.D177E	AGTGGGGTCCCCT		44	4	0.09	69	0	0				0	0				
YEATS2	55689	mdanderson.org	37	3	183504021	183504021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_018023	exon20	c.G2845T	p.A949S	AGAGTAGCAGGAG		41	3	0.07	56	0	0				74	0	0.00			
VWA5B2	90113	mdanderson.org	37	3	183954037	183954037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_138345	exon8	c.G1199A	p.R400Q	AGAGCCGGCCTTG		36	3	0.08	81	0	0				3	0	0.00			
CPZ	8532	mdanderson.org	37	4	8594640	8594640	+	Missense_Mutation	SNP	A	A	C	rs76775183	bycluster	TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_003652	exon1	c.A80C	p.N27T	AGCGGAACCCCGC		14	5	0.36	17	7	0.4117647059				2	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55599340	55599340	+	Missense_Mutation	SNP	T	T	A	rs121913514		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	KIT,NS,malignant_melanoma,+2,48	KIT	NM_000222	exon17	c.T2466A	p.N822K	TTCTAATTATGTG		81	39	0.48	94	0	0		2	48	259	169	0.65			
CDH9	1007	mdanderson.org	37	5	26890658	26890658	+	Silent	SNP	C	C	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	CDH9,NS,malignant_melanoma,-2,3	CDH9	NM_016279	exon8	c.G1269A	p.R423R	AGTATGCCGATCA		47	3	0.06	72	0	0		-2	3	0	0				
BLOC1S5-TXNDC5	100526836	hgsc.bcm.edu	37	6	7899765	7899765	+	RNA	SNP	A	A	G	rs57491386		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	.	.	.	.	AGGGAGAGAGGGA		60	11	0.18	81	0	0				0	0				
BTN2A3P	0	broad.mit.edu	37	6	26422353	26422353	+	RNA	SNP	C	C	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	BTN2A3,NS,carcinoma,0,9	.	.	.	.	.	ATGGAACCAGCTG		82	4	0.05	89	1	0.0112359551			9	1	0	0.00			
FRS3	10817	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	41738715	41738715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_006653	exon7	c.C1121T	p.T374I	GTGCTGGTGGGCT		61	6	0.10	62	0	0				15	4	0.27			
RUNX2	860	mdanderson.org	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG		22	2	0.09	31	0	0		0	2	0	0				
.	0	broad.mit.edu	37	7	38284884	38284885	+	RNA	INS	-	-	GG	rs200076851	by1000genomes	TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	.	.	.	.	TTGTCAAGGTGTG		8	5	0.63	11	0	0				0	0				
CCT6P1	0	broad.mit.edu	37	7	65226641	65226641	+	RNA	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	.	.	.	.	TCTTGCGCAGAAT		155	4	0.03	121	0	0				15	0	0.00			
GNAT3	346562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	80141182	80141182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001102386	exon1	c.A61G	p.K21E	GCTTTTTCTCCAG		82	12	0.15	97	0	0				0	0				
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82389980	82389980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_033026	exon24	c.T15263C	p.L5088P	GGACTTAGACTGA		398	68	0.17	468	0	0				0	0				
WASL	8976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	123388725	123388725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_003941	exon1	c.C64T	p.L22F	GGGTGAGCAACAG		38	11	0.29	38	0	0				95	33	0.35			
ABCB8	11194	broad.mit.edu	37	7	150725641	150725641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	ABCB8	NM_007188	exon1	c.C39T	p.G13G	GGGTGGCCCATTC		66	22	0.33	55	2	0.0363636364		65		63	17	0.27			
ARHGEF10	9639	mdanderson.org	37	8	1853876	1853876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_014629	exon17	c.G1961T	p.S654I	CCGTCAGCTCACG		40	3	0.08	52	0	0				118	1	0.01			
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77768507	77768507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_024721	exon10	c.C9350T	p.S3117F	CATCCTCCTTGCC		115	22	0.19	107	0	0				1	0	0.00			
RSPO2	340419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	109094847	109094847	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_178565	exon2	c.C20G	p.S7C	GCAAAGGAGAAAA		65	10	0.15	70	0	0				0	0				
SCRIB	23513	mdanderson.org	37	8	144874951	144874951	+	Silent	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_182706	exon30	c.C4104A	p.P1368P	GGCCTGGGGCACG		41	3	0.07	38	0	0				230	0	0.00			
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu	37	8	144940608	144940608	+	Missense_Mutation	SNP	C	C	T	rs377487212		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	EPPK1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	EPPK1	NM_031308	exon1	c.G6814A	p.V2272I	CGATGACGAAGCC		62	9	0.15	72	1	0.0138888889		0	1	50	0	0.00			
TTC39B	158219	mdanderson.org	37	9	15175099	15175099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_152574	exon19	c.C1876A	p.P626T	TGAACGGCACTAG		40	3	0.08	64	0	0				11	0	0.00			
SLC28A3	64078	mdanderson.org	37	9	86917157	86917157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001199633	exon5	c.C482A	p.P161H	CTGCCAGGAGACA		52	3	0.06	95	0	0				4	0	0.00			
CRB2	286204	mdanderson.org	37	9	126129537	126129537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_173689	exon5	c.G841T	p.D281Y	CGCTCTGACCCGG		20	3	0.15	37	0	0				0	0				
SEC16A	9919	mdanderson.org	37	9	139336215	139336215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_014866	exon32	c.C7066A	p.L2356M	AGTTCAGCACCAG		52	3	0.06	85	0	0				78	0	0.00			
EHMT1	79813	mdanderson.org	37	9	140729282	140729282	+	Silent	SNP	C	C	T	rs371136319		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_024757	exon27	c.C3774T	p.C1258C	CCGCTGCGGCTCC		54	3	0.06	84	0	0				83	0	0.00			
RNU6-28	100873756	hgsc.bcm.edu	37	X	110653901	110653901	+	RNA	SNP	T	T	C	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	.	.	.	.	AAGAGATAGAGAG		62	6	0.10	66	0	0				0	0				
