Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MMEL1	79258	mdanderson.org	37	1	2525328	2525328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_033467	exon19	c.C1792A	p.Q598K	GTGGCTGCTCCTT		34	3	0.09	81	0	0				4	0	0.00			
MTFR1L	56181	mdanderson.org	37	1	26156254	26156254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001099625	exon6	c.G706T	p.A236S	TCCAAGGCCAGCA		48	3	0.06	70	0	0				168	0	0.00			
ZMYM6	9204	bcgsc.ca	37	1	35486070	35486070	+	Splice_Site	SNP	T	T	C	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	ZMYM6	NM_007167	exon4	c.94-2A>G	.	TACTCCTTTAAAA		72	6	0.08	134	0	0		110		0	0				
SLC35D1	23169	mdanderson.org	37	1	67519691	67519691	+	Silent	SNP	C	C	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_015139	exon1	c.G6A	p.A2A	AACTTCCGCCATG		42	3	0.07	82	0	0				6	0	0.00			
OVGP1	5016	bcgsc.ca	37	1	111957533	111957533	+	Silent	SNP	C	C	T	rs112145355	bycluster	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	OVGP1	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA		93	16	0.17	173	2	0.0115606936		177		4	0	0.00			
NBPF10	100132406	hgsc.bcm.edu	37	1	145293535	145293535	+	Missense_Mutation	SNP	C	C	G	rs55936365		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	NBPF10,NS,carcinoma,0,2	NBPF10	NM_001039703	exon1	c.C130G	p.L44V	TGTTTTCTAACTC		54	5	0.09	60	2	0.0333333333		0	2	20	0	0.00			
LOR	4014	hgsc.bcm.edu	37	1	153233506	153233506	+	Silent	SNP	C	C	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	LOR,caecum,carcinoma,0,1	LOR	NM_000427	exon2	c.C81T	p.G27G	TGGCGGCGGCAGC		72	5	0.07	98	1	0.0102040816		0	1	0	0				
VSIG8	391123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	159827898	159827898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001013661	exon3	c.G412T	p.V138F	CAATGACCTTCCG		154	79	0.51	282	1	0.0035460993				0	0				
NR1I3	9970	mdanderson.org	37	1	161200619	161200619	+	Silent	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	NR1I3_ENST00000428574,NS,carcinoma,0,4	NR1I3_ENST00000428574	NM_001077482	exon8	c.C928A	p.R310R	GCCTTCGCTGCTG		50	3	0.06	75	0	0		0	4	2	0	0.00			
KIF14	9928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200529865	200529865	+	Silent	SNP	T	T	C	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_014875	exon26	c.A4215G	p.K1405K	GGCAGCTTTATTG		206	71	0.34	262	0	0				14	6	0.43			
GUK1	2987	mdanderson.org	37	1	228336514	228336514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001242840	exon7	c.G687T	p.W229C	GGAGTGGAGGAGA		30	3	0.10	62	0	0				437	0	0.00			
ADARB2-AS1	642394	mdanderson.org	37	10	1569023	1569023	+	RNA	SNP	C	C	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	.	.	.	.	TTGGTGCGTGGAG		47	3	0.06	90	0	0				8	0	0.00			
FLJ31813	0	hgsc.bcm.edu	37	10	51814574	51814574	+	RNA	SNP	G	G	C	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	.	.	.	.	CATTTAGAAAACG		57	22	0.39	86	0	0				0	0				
KCNA4	3739	mdanderson.org	37	11	30033833	30033833	+	Silent	SNP	C	C	T	rs369906337		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_002233	exon2	c.G393A	p.E131E	CTCTTCCTCCTCC		46	3	0.07	76	0	0				1	0	0.00			
MYRF	745	mdanderson.org	37	11	61537721	61537721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001127392	exon5	c.C464A	p.P155H	CAGAGCCCCACCT		33	3	0.09	66	0	0				26	0	0.00			
FERMT3	83706	mdanderson.org	37	11	63988602	63988602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_178443	exon13	c.G1672T	p.V558F	TCCTATGTCATGG		13	2	0.15	33	0	0				22	0	0.00			
CCDC88B	283234	mdanderson.org	37	11	64116835	64116835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_032251	exon15	c.G2649T	p.E883D	CAAGGAGTTGGGG		34	4	0.12	81	0	0				6	0	0.00			
TPCN2	219931	mdanderson.org	37	11	68837924	68837924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_139075	exon9	c.C856T	p.R286W	AAGAACCGGGCCT		21	2	0.10	80	0	0				25	0	0.00			
SRPR	6734	bcgsc.ca	37	11	126136799	126136799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	SRPR,NS,carcinoma,0,2	SRPR	NM_003139	exon5	c.C545A	p.A182D	CTGGTAGCCAAAG		152	9	0.06	279	6	0.0215053763		60	2	146	3	0.02			
RBP5	0	broad.mit.edu	37	12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		6	3	0.50	6	0	0		20		19	0	0.00			
LRP6	4040	broad.mit.edu	37	12	12317329	12317329	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	LRP6,NS,carcinoma,+1,2	LRP6	NM_002336	exon9	c.C1930G	p.R644G	AAATTCGTCTGAT		198	5	0.03	150	0	0		170	2	32	0	0.00			
HAL	3034	mdanderson.org	37	12	96389642	96389642	+	Missense_Mutation	SNP	G	G	T	rs188894951	by1000genomes;alternate_allele	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_002108	exon2	c.C47A	p.P16H	TGGCAGGGCACTG		19	3	0.16	29	0	0				0	0				
EID3	493861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104698695	104698695	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001008394	exon1	c.T983A	p.I328N	CTATGATTACATA		87	46	0.53	184	0	0				1	0	0.00			
DIS3	22894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	73335570	73335571	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	AT	AT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	DIS3	NM_014953	exon19	c.2601_2602del	p.867_868del	TAAACCATACTTT		105	32	0.30	153	0	0		103		41	0	0.00			
MYCBP2	23077	bcgsc.ca;mdanderson.org	37	13	77742671	77742671	+	Silent	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	MYCBP2	NM_015057	exon40	c.C6006A	p.T2002T	TCCTGTGGTGCTA		129	6	0.05	208	1	0.0048076923		1029		5	0	0.00			
SOCS4	122809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	55509766	55509766	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_080867	exon2	c.G7T	p.E3X	ATGGCAGAAAATA		58	27	0.47	107	0	0				8	2	0.25			
TTC9	23508	mdanderson.org	37	14	71109248	71109248	+	Silent	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_015351	exon1	c.G402T	p.L134L	CAGCCTGGCAGGT		19	2	0.11	53	0	0				13	0	0.00			
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	81297580	81297612	+	In_Frame_Del	DEL	CAGCTGCACTCTCAAATCTGACATTTGCTTCTC	CAGCTGCACTCTCAAATCTGACATTTGCTTCTC	-	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	CAGCTGCACTCTCAAATCTGACATTTGCTTCTC	CAGCTGCACTCTCAAATCTGACATTTGCTTCTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	CEP128	NM_152446	exon12	c.1085_1117del	p.362_373del	GAAGTTCAGCTGC		193	30	0.16	450	0	0		146		4	0	0.00			
CDC42BPB	9578	mdanderson.org	37	14	103416135	103416135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_006035	exon26	c.C3416A	p.P1139H	ACACCAGGCTGGG		45	3	0.07	114	0	0				91	0	0.00			
HCN4	10021	mdanderson.org	37	15	73615969	73615969	+	Missense_Mutation	SNP	G	G	T	rs201143364	bycluster;by1000genomes;alternate_allele	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_005477	exon8	c.C2465A	p.T822K	CTTGGCGTCTGCC		20	2	0.10	27	0	0				1	0	0.00			
ADAMTS17	170691	ucsc.edu	37	15	100636613	100636613	+	Silent	SNP	G	G	A	rs141443664		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	ADAMTS17	NM_139057	exon15	c.C2085T	p.D695D	CTTGCCGTCCCCG		47	4	0.09	61	0	0		127		8	0	0.00			
MAPK8IP3	23162	mdanderson.org	37	16	1817206	1817206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_015133	exon26	c.T3142C	p.S1048P	CACCACTCCATCC		52	3	0.06	153	0	0				109	1	0.01			
NTHL1	4913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2094711	2094711	+	Missense_Mutation	SNP	G	G	A	rs376048896		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_002528	exon3	c.C469T	p.R157W	GGCCCCGCGCCCG		35	15	0.43	75	0	0				98	44	0.45			
SEZ6L2	26470	mdanderson.org	37	16	29888693	29888693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001243332	exon11	c.G1808T	p.R603L	AGGCGGCGGCGCG		35	3	0.09	132	0	0				32	0	0.00			
RRAD	6236	mdanderson.org	37	16	66957613	66957613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	RRAD,colon,carcinoma,-1,1	RRAD	NM_001128850	exon4	c.G455A	p.R152H	AACCAGCGGCCCC		47	3	0.06	112	0	0		-1	1	13	0	0.00			
IL34	146433	mdanderson.org	37	16	70680870	70680870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001172772	exon2	c.G20T	p.W7L	TCACCTGGCTGCG		39	3	0.08	62	0	0				0	0				
CHST4	10164	mdanderson.org	37	16	71571321	71571321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001166395	exon2	c.G741T	p.Q247H	GATGCAGGTCATC		52	3	0.06	104	0	0				3	0	0.00			
DPEP1	1800	mdanderson.org	37	16	89702799	89702799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001128141	exon4	c.G365T	p.S122I	CCAGCAGTGCAGG		47	3	0.06	154	0	0				1	0	0.00			
ZNF286A	57335	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	15611559	15611559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	ZNF286A	NM_020652	exon5	c.C332T	p.S111L	GCTATTCAGGTGA		144	6	0.04	280	0	0		58		47	4	0.09			
ABCA6	23460	hgsc.bcm.edu	37	17	67136799	67136799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_080284	exon2	c.C46A	p.L16M	TGCACAGAAGTGC		90	4	0.04	122	0	0				1	0	0.00			
RNF213	57674	broad.mit.edu	37	17	78262016	78262016	+	Missense_Mutation	SNP	G	G	A	rs199976159	bycluster	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	RNF213	NM_001256071	exon4	c.G664A	p.G222S	GGGACCGGTCCCC		74	3	0.04	141	0	0		766		6	0	0.00			
C19orf35	374872	mdanderson.org	37	19	2275721	2275721	+	Silent	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_198532	exon4	c.C1380A	p.T460T	GGACTCGGTGGCC		27	3	0.11	71	0	0				0	0				
DUS3L	56931	mdanderson.org	37	19	5786832	5786832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_020175	exon9	c.C1414A	p.R472S	TGTAGCGCTGCTC		51	3	0.06	88	0	0				49	0	0.00			
KEAP1	9817	mdanderson.org	37	19	10597469	10597469	+	Silent	SNP	C	C	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_012289	exon6	c.G1734T	p.L578L	ACTGTCCAGGAAC		52	3	0.06	118	0	0				229	0	0.00			
ZNF682	91120	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	20117945	20117946	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	CT	CT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	ZNF682	NM_033196	exon4	c.366_367del	p.122_123del	CTTACACTCACCC		110	51	0.46	134	0	0		51		11	0	0.00			
.	7617	bcgsc.ca	37	19	20989041	20989041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	.	.	.	.	TCAACCGGTCCTC		29	11	0.38	34	0	0				1	1	1.00			
CLASRP	11129	bcgsc.ca	37	19	45559754	45559754	+	Silent	SNP	C	C	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	CLASRP	NM_007056	exon6	c.C426T	p.Y142Y	GTTGTACGGAGGC		45	4	0.09	112	0	0		44		112	0	0.00			
TRAPPC12	51112	mdanderson.org	37	2	3461436	3461436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_016030	exon7	c.G1575T	p.M525I	CGGCATGAGCAGC		15	3	0.20	29	0	0				44	0	0.00			
FBXO11	80204	broad.mit.edu	37	2	48036814	48036814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	FBXO11	NM_001190274	exon20	c.C2371A	p.L791I	CTTCTAGTGTTGC		104	4	0.04	116	0	0		127		187	0	0.00			
VPS54	51542	mdanderson.org	37	2	64160840	64160840	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_016516	exon12	c.C1706A	p.S569X	GATGATGATGTGT		47	3	0.06	47	0	0				43	0	0.00			
TMEM182	130827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	103380825	103380825	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_144632	exon3	c.C270A	p.Y90X	TGCTTACCTGTCT		136	37	0.27	153	0	0				19	4	0.21			
LOC100131320	0	broad.mit.edu	37	2	130726529	130726529	+	RNA	DEL	A	A	-	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	.	.	.	.	AAGTGCAAAAAAA		11	4	0.36	6	0	0				0	0				
PDE6D	64708	broad.mit.edu	37	2	232646544	232646544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	PDE6D	.	.	.	.	CAGCCCGCAGAGA		162	4	0.02	193	0	0		8		3	0	0.00			
FAM83C	128876	mdanderson.org	37	20	33875775	33875775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_178468	exon4	c.C807A	p.S269R	GGTGAAGCTGGGG		33	3	0.09	83	1	0.0120481928				0	0				
SLC32A1	140679	broad.mit.edu	37	20	37357187	37357187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	SLC32A1,NS,carcinoma,0,3	SLC32A1	NM_080552	exon2	c.G1483A	p.A495T	GACGTCGCCATCT		100	4	0.04	161	0	0		81	3	0	0				
COL6A1	1291	mdanderson.org	37	21	47417374	47417374	+	Missense_Mutation	SNP	G	G	T	rs372619016	alternate_allele	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001848	exon21	c.G1438T	p.D480Y	CGAGGCGATGAGG		45	3	0.07	77	0	0				425	0	0.00			
BID	637	mdanderson.org	37	22	18220954	18220954	+	Silent	SNP	C	C	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_197966	exon5	c.G543A	p.L181L	GGCCTGCAGCAGC		35	3	0.09	63	0	0				118	0	0.00			
EMC3	55831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10012302	10012302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	TMEM111,bladder,carcinoma,+1,1	TMEM111	NM_018447	exon6	c.C538T	p.R180W	TGCTCCGAAGCCC		66	30	0.45	153	0	0		1	1	142	56	0.39			
ADCY5	111	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	123049765	123049765	+	Silent	SNP	C	C	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	ADCY5	NM_183357	exon5	c.G1617A	p.E539E	GCCCATCTCCACA		191	7	0.04	296	0	0		169		13	0	0.00			
MUC4	4585	hgsc.bcm.edu	37	3	195508174	195508174	+	Missense_Mutation	SNP	G	G	A	rs200854768	byfrequency	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	MUC4_ENST00000463781,NS,carcinoma,-1,3	MUC4_ENST00000463781	NM_018406	exon2	c.C10277T	p.P3426L	GTGACAGGAAGAG		50	3	0.06	79	1	0.0126582278	0.008	-1	3	0	0				
TXK	7294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48115254	48115254	+	Silent	SNP	C	C	T	rs200958317	by1000genomes	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_003328	exon3	c.G144A	p.P48P	GAGCCACGGCCTG		56	22	0.39	89	0	0	0			0	0				
MEGF10	84466	broad.mit.edu	37	5	126781227	126781227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	MEGF10	NM_032446	exon21	c.G2570T	p.G857V	AGATCGGGGCCAT		171	4	0.02	273	0	0		152		5	0	0.00			
EGR1	1958	mdanderson.org	37	5	137803157	137803157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001964	exon2	c.G1019T	p.C340F	ACGCTTGCCCAGT		42	3	0.07	80	1	0.0125				47	0	0.00			
TFAP2D	83741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	50740418	50740418	+	Silent	SNP	A	A	C	rs375378399		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	TFAP2D,NS,carcinoma,+1,2	TFAP2D	NM_172238	exon8	c.A1200C	p.T400T	CCAAACAGTTCTC		78	28	0.36	95	0	0		1	2	0	0				
COX7A2	1347	mdanderson.org	37	6	75947704	75947704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001865	exon4	c.G290T	p.G97V	GCTGTTCCTAAAA		28	3	0.11	36	0	0				764	0	0.00			
TPBG	7162	broad.mit.edu	37	6	83075780	83075780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	TPBG	NM_001166392	exon2	c.G1102T	p.A368S	ATAGGCGCTATTT		103	4	0.04	167	0	0		37		136	0	0.00			
GTF2IRD1P1	0	broad.mit.edu	37	7	66302570	66302570	+	RNA	DEL	C	C	-	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	.	.	.	.	TCTCCTCCCACCT		6	2	0.33	8	0	0				0	0				
DGKI	9162	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	137076063	137076063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	DGKI_ENST00000288490,NS,carcinoma,+1,2	DGKI	NM_004717	exon34	c.G3101T	p.R1034I	TGTGCTCTTTCTT		100	7	0.07	153	0	0		335	2	4	0	0.00			
ABCB8	11194	broad.mit.edu;mdanderson.org	37	7	150741097	150741097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	ABCB8	NM_007188	exon15	c.G1805T	p.R602L	AGCAGCGCCTGGC		76	4	0.05	169	0	0		65		42	0	0.00			
HTR5A	3361	mdanderson.org	37	7	154862923	154862923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_024012	exon1	c.G314T	p.R105L	CCGGGCGCCGCTG		15	2	0.13	35	0	0				0	0				
KIF13B	23303	mdanderson.org	37	8	28929560	28929560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_015254	exon39	c.C4795A	p.P1599T	CCTCAGGGGCGGT		16	2	0.13	12	0	0				2	0	0.00			
PXDNL	137902	mdanderson.org	37	8	52321586	52321586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_144651	exon17	c.C2598A	p.S866R	CGCGGGGCTGGAG		36	3	0.08	63	0	0				2	0	0.00			
FLJ39080	0	hgsc.bcm.edu;bcgsc.ca	37	8	75516361	75516361	+	RNA	SNP	C	C	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	.	.	.	.	TCCTCGCGCATCT		58	13	0.22	55	0	0				907	0	0.00			
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145619906	145619906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_013291	exon31	c.G3520A	p.A1174T	ACAGGGCGGTCAC		86	26	0.30	93	0	0				359	97	0.27			
KIAA0020	9933	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	2837296	2837296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	KIAA0020	NM_014878	exon3	c.A188G	p.K63R	ACACCCTTTTTCC		133	5	0.04	250	0	0		56		48	0	0.00			
FOCAD	54914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	20819865	20819865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_017794	exon14	c.T1526C	p.I509T	ATGATATATTGTA		487	190	0.39	645	0	0				11	5	0.45			
CCDC180	0	mdanderson.org	37	9	100128018	100128018	+	Silent	SNP	A	A	G	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_020893	exon30	c.A4176G	p.A1392A	AGTCGCAGAGGTG		21	3	0.14	80	0	0				9	0	0.00			
DFNB31	25861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117266554	117266554	+	Silent	SNP	T	T	C	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001173425	exon1	c.A528G	p.L176L	CTCAGCTAGAGAG		50	17	0.34	110	0	0				7	2	0.29			
P2RY8	286530	mdanderson.org	37	X	1584418	1584418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_178129	exon2	c.A1034G	p.E345G	GCTCCCTCCATCC		55	3	0.05	87	1	0.0114942529				1	0	0.00			
PPEF1	5475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18845518	18845518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_006240	exon19	c.C1875A	p.S625R	TGGAAGCATTGAC		213	66	0.31	209	0	0				3	0	0.00			
SMS	6611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	21995231	21995231	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_004595	exon5	c.G382C	p.D128H	ACCGCCGACGGGC		232	11	0.05	227	0	0				228	0	0.00			
ZNF645	158506	broad.mit.edu	37	X	22291678	22291678	+	Silent	SNP	A	A	G	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	ZNF645	NM_152577	exon1	c.A570G	p.L190L	GTCACTACCGTCT		259	7	0.03	198	1	0.0050505051		67		0	0				
MAGEB10	139422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	27839493	27839493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_182506	exon3	c.G70A	p.D24N	CTGGAAGATTTGA		159	50	0.31	154	0	0				0	0				
DCAF8L1	139425	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	27998407	27998407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001017930	exon1	c.C1045A	p.Q349K	CAAATTGGTAAAT		157	10	0.06	140	0	0				0	0				
MED14	9282	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	40569339	40569339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	MED14	NM_004229	exon9	c.C1065A	p.H355Q	AACTTTGTGAACA		409	168	0.41	345	2	0.0057971014		108		17	0	0.00			
HEPH	9843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	65479954	65479954	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_138737	exon19	c.T3211A	p.Y1071N	GAGAACTACCGGG		97	38	0.39	93	0	0				28	0	0.00			
COL4A5	1287	mdanderson.org	37	X	107683387	107683387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_000495	exon1	c.G32T	p.G11V	CTGCCGGCTTGTT		43	3	0.07	49	0	0				47	0	0.00			
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	107929306	107929306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_000495	exon46	c.G4244A	p.G1415D	TCCCTGGCTTTGA		246	14	0.06	205	0	0				186	13	0.07			
CHRDL1	91851	mdanderson.org	37	X	109963072	109963072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001143981	exon6	c.G532A	p.V178I	TGCATACCCGGCA		52	3	0.06	58	0	0				14	0	0.00			
MAGEA10-MAGEA5	0	broad.mit.edu	37	X	151290014	151290014	+	RNA	DEL	C	C	-	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	.	.	.	.	TTTTTTCCTCTTT		11	5	0.45	8	0	0				0	0				
TXNRD2	10587	mdanderson.org	37	22	19882962	19882962	+	Missense_Mutation	SNP	G	G	T	rs371153395	alternate_allele	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	.	.	.	.	GTGCCCGTGTCCT		45	3	0.07	105	0	0				66	0	0.00			
