Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
SLC35E2B	728661	mdanderson.org	37	1	1601537	1601537	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001110781	exon6	c.C761A	p.S254X	ACTTACGAGAACC		44	3	0.07	52	0	0				21	0	0.00			
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10394661	10394661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_015074	exon26	c.G2870A	p.R957Q	AAGTGCGGGGATT		73	16	0.22	75	0	0				9	1	0.11			
CROCC	9696	broad.mit.edu	37	1	17272075	17272075	+	Missense_Mutation	SNP	G	G	A	rs2781608	bycluster;by1000genomes	TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	CROCC,NS,carcinoma,0,10	CROCC	NM_014675	exon15	c.G2110A	p.A704T	GAGAAGGCCGAGG		81	4	0.05	73	1	0.0136986301		185	10	17	1	0.06			
CDCP2	200008	mdanderson.org	37	1	54618525	54618525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_201546	exon1	c.C71A	p.A24D	TCCATGGCTTGGG		80	4	0.05	88	0	0				0	0				
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	249211094	249211094	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_170725	exon3	c.C311G	p.A104G	AGAAAGCAGTTGT		65	18	0.28	52	0	0				30	14	0.47			
KIAA1279	26128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70760227	70760227	+	Silent	SNP	A	A	C	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_015634	exon2	c.A474C	p.A158A	AACTGCACAGGCT		33	11	0.33	27	0	0				27	14	0.52			
EXOSC1	51013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	99205531	99205531	+	Silent	SNP	C	C	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_016046	exon2	c.G105A	p.S35S	AAGCGACGAAAAG		39	11	0.28	50	0	0				74	31	0.42			
BRSK2	9024	mdanderson.org	37	11	1467102	1467102	+	Silent	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001256630	exon12	c.G1329T	p.A443A	GCCTGCGCGGCGG		43	3	0.07	51	0	0				3	0	0.00			
HARBI1	283254	mdanderson.org	37	11	46637619	46637619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_173811	exon2	c.C169A	p.L57I	TAGAAAGATTCGC		41	3	0.07	53	0	0				7	0	0.00			
CKAP5	9793	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	46819368	46819368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001008938	exon11	c.C1325A	p.A442D	AGTGCAGCACAAA		114	7	0.06	151	0	0				31	3	0.10			
PGR	5241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	100933354	100933354	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_000926	exon4	c.A2036T	p.Q679L	ATGTCTTGACCTG		102	12	0.12	123	0	0				0	0				
MLL2	8085	hgsc.bcm.edu;mdanderson.org	37	12	49427679	49427679	+	Silent	SNP	C	C	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	MLL2_ENST00000301067,NS,carcinoma,0,2	MLL2_ENST00000301067	NM_003482	exon39	c.G10809A	p.Q3603Q	CTGCTGCTGTTGT		31	3	0.10	26	0	0		0	2	17	0	0.00			
ASIC1	41	mdanderson.org	37	12	50452708	50452708	+	Silent	SNP	C	C	A	rs653576	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_020039	exon2	c.C159A	p.S53S	GGGCTCCCTGGCT		62	2	0.03	48	0	0				4	0	0.00			
CALCOCO1	57658	hgsc.bcm.edu	37	12	54115831	54115831	+	Missense_Mutation	SNP	G	G	T	rs146731373	bycluster;alternate_allele	TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	CALCOCO1,NS,carcinoma,0,1	CALCOCO1	NM_020898	exon5	c.C587A	p.T196K	AGCTCCGTGTGCT		45	2	0.04	43	0	0		0	1	64	0	0.00			
MMP17	4326	mdanderson.org	37	12	132326266	132326266	+	Silent	SNP	G	G	A	rs141989989	bycluster;by1000genomes	TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_016155	exon5	c.G804A	p.P268P	GCGGCCGTACTAC		40	3	0.08	55	0	0	0.001			3	0	0.00			
ULK1	8408	mdanderson.org	37	12	132403798	132403798	+	Silent	SNP	G	G	A	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_003565	exon24	c.G2553A	p.L851L	CACGCTGCTGTTC		14	3	0.21	24	0	0				82	0	0.00			
LMO7	4008	mdanderson.org	37	13	76391409	76391409	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_015842	exon9	c.C1360T	p.Q454X	AAATGGCAGGATG		16	3	0.19	18	0	0				16	0	0.00			
.	0	bcgsc.ca	37	14	20138135	20138135	+	RNA	SNP	C	C	T	rs77023132		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	.	.	.	.	CAATTACTCTCCA		42	18	0.43	36	8	0.2222222222				0	0				
APOPT1	84334	mdanderson.org	37	14	104056568	104056568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_032374	exon5	c.C566T	p.A189V	AAGTGGCCCTGGA		37	3	0.08	50	0	0				113	0	0.00			
PACS2	23241	mdanderson.org	37	14	105859025	105859025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001100913	exon23	c.G2325T	p.R775S	GGACAGGAAGAGG		40	3	0.08	35	0	0				57	0	0.00			
LTK	4058	mdanderson.org	37	15	41800323	41800323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_002344	exon9	c.C1193A	p.A398D	CATTCAGCCAGCT		46	3	0.07	32	0	0				12	0	0.00			
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	76668615	76668615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_020843	exon28	c.G3743T	p.R1248L	ATGTGCCGGAATG		68	7	0.10	70	0	0				23	3	0.13			
NTHL1	4913	mdanderson.org	37	16	2089944	2089944	+	Missense_Mutation	SNP	G	G	T	rs367629024	alternate_allele	TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_002528	exon6	c.C920A	p.P307Q	GCGGCCGGGCAGA		15	2	0.13	15	0	0				28	0	0.00			
MYH11	4629	mdanderson.org	37	16	15841974	15841974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	MYH11_ENST00000396324,NS,carcinoma,+1,2	MYH11_ENST00000396324	NM_001040114	exon18	c.G2131T	p.V711L	CCAGCACCCCATT		45	3	0.07	48	0	0		1	2	6	0	0.00			
QPRT	23475	mdanderson.org	37	16	29706335	29706335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_014298	exon2	c.G364T	p.V122L	GCTGCAGTGGAGG		19	2	0.11	23	0	0				137	0	0.00			
RPGRIP1L	23322	hgsc.bcm.edu	37	16	53682980	53682980	+	Silent	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001127897	exon16	c.C2200A	p.R734R	TTAATCGGAACCA		88	4	0.05	114	0	0				2	0	0.00			
EFCAB13	124989	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	45438806	45438806	+	Missense_Mutation	SNP	G	G	A	rs377500863		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_152347	exon10	c.G724A	p.V242M	GATGACGTGTTTG		151	8	0.05	142	0	0				0	0				
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57721790	57721790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_004859	exon2	c.A196G	p.I66V	AGACCAATTTCAG		125	33	0.26	106	0	0				99	22	0.22			
EPG5	57724	mdanderson.org	37	18	43469833	43469833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_020964	exon28	c.C4882A	p.Q1628K	CTGCTTGCAACTG		41	3	0.07	59	0	0				8	0	0.00			
FBN3	84467	mdanderson.org	37	19	8148193	8148193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_032447	exon56	c.G7151A	p.G2384D	AAGGAGCCAAGGC		39	3	0.08	32	0	0				71	0	0.00			
ZNF799	90576	ucsc.edu	37	19	12501560	12501560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	ZNF799	NM_001080821	exon4	c.A1652G	p.E551G	ATTCTTTCATGTC		183	3	0.02	161	1	0.0062111801		111		30	6	0.20	rescued with RNA-seq		
CYP4F8	11283	broad.mit.edu	37	19	15726774	15726775	+	RNA	DEL	CC	CC	-	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	CC	CC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	CYP4F8	.	.	.	.	TCCTCTCCTCACT		18	5	0.28	10	0	0		64		0	0				
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50148669	50148669	+	Splice_Site	SNP	G	G	A	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	SCAF1,NS,carcinoma,0,1	SCAF1	NM_021228	exon3	c.166+1G>A	.	ATAAAGGTATGGC		163	31	0.19	125	0	0		0	1	0	0				
ZNF628	89887	mdanderson.org	37	19	55995616	55995616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_033113	exon3	c.C3056T	p.P1019L	GGGCTCCAGCCTC		34	3	0.09	38	0	0				16	0	0.00			
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32667481	32667481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_016252	exon19	c.G4196T	p.S1399I	GACGAAGTATAGC		90	9	0.10	57	0	0				4	0	0.00			
GPR39	2863	hgsc.bcm.edu	37	2	133175021	133175021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	GPR39,NS,carcinoma,0,1	GPR39	NM_001508	exon1	c.G406A	p.A136T	TACATCGCCATCT		74	3	0.04	62	0	0		0	1	5	0	0.00			
FRG1B	284802	bcgsc.ca	37	20	29628233	29628233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	FRG1B	.	.	.	.	GGGAAAATGGCTT		383	18	0.05	301	3	0.0099667774		181		78	0	0.00			
ZNF341	84905	mdanderson.org	37	20	32333094	32333094	+	Missense_Mutation	SNP	G	G	T	rs373744673	alternate_allele	TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_032819	exon3	c.G328T	p.A110S	ACTCCTGCCAATC		40	3	0.08	51	0	0				5	0	0.00			
BAGE2	85319	broad.mit.edu	37	21	11058282	11058282	+	RNA	SNP	G	G	A	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_182482	exon3	c.C158T	p.A53V	TTCACAGCATTTG		185	6	0.03	135	2	0.0148148148				1	0	0.00			
.	0	broad.mit.edu	37	22	18843462	18843462	+	RNA	DEL	G	G	-	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	.	.	.	.	GGACAAGGGGCCA		108	28	0.26	60	6	0.1				0	0				
TMEM175	84286	mdanderson.org	37	4	947055	947055	+	Silent	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_032326	exon8	c.G540T	p.L180L	GGCTCTGTACCGA		41	3	0.07	66	0	0				29	0	0.00			
DSPP	1834	ucsc.edu	37	4	88536880	88536880	+	Silent	SNP	C	C	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	DSPP	NM_014208	exon5	c.C3066T	p.S1022S	CAGCAGCAATAGC		44	4	0.09	63	1	0.0158730159		174		0	0				
HERC5	51191	broad.mit.edu;bcgsc.ca	37	4	89388236	89388236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	HERC5	NM_016323	exon7	c.A938G	p.D313G	TTTCTGATTTGGG		83	6	0.07	117	1	0.0085470085		114		33	1	0.03			
MEGF10	84466	mdanderson.org	37	5	126753482	126753482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	MEGF10,NS,adenocarcinoma,-1,1	MEGF10	NM_001256545	exon10	c.G1283T	p.C428F	GAAAGTGCACCTG		39	3	0.08	52	0	0		-1	1	3	0	0.00			
PCDHB4	56131	hgsc.bcm.edu	37	5	140503155	140503155	+	Silent	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	PCDHB4,caecum,carcinoma,+1,1	PCDHB4	NM_018938	exon1	c.G1575T	p.A525A	GCAGGCGTTCGAG		33	4	0.12	40	2	0.05		1	1	0	0				
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161277838	161277838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001127643	exon3	c.T22C	p.S8P	GGTCTGTCTGACT		53	8	0.15	69	0	0				0	0				
PPARD	5467	mdanderson.org	37	6	35391795	35391795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001171818	exon7	c.G497T	p.S166I	AGGGGAGCCAGTA		38	3	0.08	34	0	0				26	0	0.00			
TAAR9	134860	broad.mit.edu	37	6	132860291	132860291	+	RNA	SNP	C	C	A	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	.	.	.	.	TTATAACTCCTCC		99	4	0.04	76	0	0				0	0				
SNX9	51429	bcgsc.ca;mdanderson.org	37	6	158296192	158296192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	SNX9	NM_016224	exon4	c.C284T	p.A95V	CGGCTGCCAGCAA		104	5	0.05	95	0	0		43		55	0	0.00			
DACT2	168002	mdanderson.org	37	6	168711949	168711949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_214462	exon2	c.C262A	p.Q88K	TGTCCTGTTGTCT		28	3	0.11	29	0	0				13	0	0.00			
AP5Z1	9907	mdanderson.org	37	7	4828510	4828510	+	Silent	SNP	C	C	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	KIAA0415_ENST00000450194,NS,carcinoma,+1,2	KIAA0415_ENST00000450194	NM_014855	exon13	c.C1635T	p.G545G	GGCCGGCTGTGCC		35	3	0.09	32	0	0		1	2	42	0	0.00			
RADIL	55698	mdanderson.org	37	7	4876055	4876055	+	Missense_Mutation	SNP	G	G	T	rs200447001	bycluster;by1000genomes	TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_018059	exon3	c.C717A	p.D239E	CATGGCGTCGGGG		45	3	0.07	39	0	0	0.001			12	0	0.00			
TWIST1	7291	mdanderson.org	37	7	19156362	19156362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_000474	exon1	c.G583A	p.A195T	ACCAGGCCCCCTC		37	3	0.08	40	0	0				76	0	0.00			
DPY19L2P2	0	broad.mit.edu	37	7	102883750	102883750	+	RNA	DEL	T	T	-	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	.	.	.	.	ACATAATTTTTTT		11	4	0.36	4	0	0				0	0				
KCNH2	3757	mdanderson.org	37	7	150644785	150644785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_000238	exon12	c.C2874A	p.F958L	GCTGGAGAAGGGC		40	3	0.08	54	1	0.0185185185				4	0	0.00			
TNKS	8658	mdanderson.org	37	8	9627763	9627763	+	Silent	SNP	A	A	G	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_003747	exon26	c.A3888G	p.R1296R	CTACAGAGGAGAA		39	3	0.08	41	0	0				24	0	0.00			
MLLT3	4300	hgsc.bcm.edu	37	9	20414373	20414373	+	Silent	SNP	G	G	A	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	MLLT3,NS,carcinoma,0,4	MLLT3	NM_004529	exon5	c.C471T	p.S157S	GCTGCTGCTACTG		47	4	0.09	33	2	0.0606060606		0	4	2	0	0.00			
PRSS3	5646	broad.mit.edu	37	9	33794809	33794809	+	Missense_Mutation	SNP	G	G	A	rs201061108		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	PRSS3	NM_001197097	exon2	c.G20A	p.S7N	AGACAAGTGGCTT		61	7	0.11	44	0	0		79		0	0				
LOC100132077	0	broad.mit.edu	37	9	97109268	97109275	+	RNA	DEL	AAAAAAGA	AAAAAAGA	-	rs371617960	bycluster;alternate_allele	TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	AAAAAAGA	AAAAAAGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	.	.	.	.	AAAAAGAAAAAAG		6	2	0.33	8	0	0				0	0				
CYTB	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	15765	15765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	ENST00000361789	exon1	c.G1019A	p.G340E	TCGGAGGACAACC		12	10	0.83	23	0	0				0	0				
SYTL4	94121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	99945112	99945112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001129896	exon9	c.G768T	p.M256I	AAATATCATCTCA		171	12	0.07	130	0	0				3	0	0.00			
NBPF9	400818	hgsc.bcm.edu	37	1	144813815	144813815	+	Silent	SNP	A	A	G	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	NBPF9_ENST00000338347,NS,carcinoma,0,5	NBPF9_ENST00000338347	.	.	.	.	GCTTGCAGAGCAG		14	5	0.36	14	2	0.1428571429		0	5	8	0	0.00			
