Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
ATAD3C	219293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1396296	1396296	+	Missense_Mutation	SNP	C	C	T	rs202189170	bycluster	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001039211	exon10	c.C979T	p.R327W	GGAAAGCGGTAAG		72	11	0.15	87	0	0				15	1	0.07			
MTOR	2475	broad.mit.edu	37	1	11264759	11264759	+	Splice_Site	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	MTOR	NM_004958	exon26	c.C3803A	p.A1268D	CCCCAGGCCTGTG		226	8	0.04	147	0	0		327		0	0				
.	100421113	bcgsc.ca	37	1	17077196	17077196	+	RNA	SNP	G	G	T	rs1988816	bycluster;by2hit2allele	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	TGGAGAGTGCCCT		118	16	0.14	67	2	0.0298507463				0	0				
HSPG2	3339	broad.mit.edu	37	1	22213941	22213941	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	HSPG2	NM_005529	exon8	c.C930A	p.C310X	GTCCTCGCAGTCC		104	3	0.03	59	0	0		311		0	0				
CCDC28B	79140	broad.mit.edu	37	1	32670247	32670248	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	CCDC28B	.	.	.	.	CGTCTATGTGTGT		169	8	0.05	150	0	0		21		0	0				
GNG12-AS1	100289178	hgsc.bcm.edu;ucsc.edu	37	1	68564463	68564463	+	RNA	SNP	C	C	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	TAAAACCATGCAA		181	23	0.13	101	0	0				0	0				
ST6GALNAC5	81849	broad.mit.edu	37	1	77334301	77334301	+	Silent	SNP	A	A	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	ST6GALNAC5	NM_030965	exon2	c.A135G	p.Q45Q	GCAGCAACAGCAG		177	6	0.03	85	1	0.0117647059		59		0	0				
OLFML3	56944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114523051	114523051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_020190	exon2	c.A212T	p.K71M	CAGAGAAGGAGCG		159	30	0.19	130	0	0				5	1	0.20			
RRNAD1	51093	mdanderson.org	37	1	156704005	156704005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_015997	exon6	c.G841T	p.A281S	GCCCTGGCCTCAG		89	4	0.04	70	0	0				22	0	0.00			
ZC3H11A	9877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203819655	203819655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_014827	exon18	c.T1952C	p.V651A	CCAAAGTGAACGT		192	32	0.17	142	0	0				6	3	0.50			
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85972858	85972858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001171971	exon16	c.G1794C	p.E598D	AGACGAGGATGCA		148	16	0.11	93	0	0				0	0				
ACSL5	51703	broad.mit.edu	37	10	114182136	114182136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	ACSL5	NM_016234	exon17	c.G1698T	p.K566N	TGAGAAGACACAG		92	5	0.05	52	0	0		51		17	0	0.00			
ZDHHC24	254359	mdanderson.org	37	11	66307129	66307129	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_207340	exon3	c.C726A	p.C242X	GTTGTGGCAGGGA		27	3	0.11	20	0	0				63	0	0.00			
UNC93B1	81622	broad.mit.edu	37	11	67763107	67763107	+	Silent	SNP	A	A	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	CAGGGCACTGCCC		82	5	0.06	75	2	0.0266666667				72	0	0.00			
BCL9L	283149	mdanderson.org	37	11	118769751	118769751	+	Silent	SNP	G	G	A	rs141872454	bycluster;by1000genomes	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	BCL9L_ENST00000392849,NS,carcinoma,0,2	BCL9L_ENST00000392849	NM_182557	exon8	c.C3873T	p.D1291D	GTATGCGTCGCCC		43	3	0.07	40	0	0	0	0	2	5	0	0.00			
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	bycluster	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	KRAS_ENST00000256078,NS,adenocarcinoma,0,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G35T	p.G12V	ACGCCACCAGCTC		302	20	0.07	181	0	0		0	25136	1	0	0.00			
RACGAP1	29127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	50393482	50393482	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_013277	exon10	c.C665G	p.T222S	GGAACAGTCACTG		101	10	0.10	94	0	0				7	0	0.00			
KRT82	3888	mdanderson.org	37	12	52794398	52794398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_033033	exon4	c.C690A	p.D230E	GGCTGTGTCCACG		47	3	0.06	31	0	0				0	0				
HNRNPA1P10	664709	hgsc.bcm.edu	37	12	54677045	54677045	+	RNA	SNP	G	G	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	GTACTTGGTGTGA		124	14	0.11	84	0	0				0	0				
ZMYM2	7750	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	20610939	20610939	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001190964	exon13	c.A2182T	p.N728Y	ACTTGCAACTATT		136	12	0.09	126	0	0				3	0	0.00			
NUPL1	9818	bcgsc.ca	37	13	25875927	25875927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	NUPL1	NM_014089	exon1	c.T16C	p.S6P	GGGTTCTCCTTCG		58	4	0.07	69	0	0		37		8	0	0.00			
.	0	broad.mit.edu	37	13	52855276	52855277	+	RNA	DEL	TG	TG	-	rs72183844	alternate_allele	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	TGTGCTTGTGTGT		11	7	0.64	7	0	0				0	0				
ACIN1	22985	broad.mit.edu	37	14	23530745	23530745	+	Silent	SNP	T	T	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	ACIN1	NM_014977	exon17	c.A3360C	p.P1120P	TGGGGGTGGGGGG		77	18	0.23	50	5	0.1		147		67	3	0.04			
KIAA0586	9786	broad.mit.edu	37	14	58934640	58934640	+	Splice_Site	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	KIAA0586	NM_001244189	exon18	c.G2601T	p.Q867H	TGTGCAGGTATGC		143	5	0.03	115	0	0		180		0	0				
IRF2BPL	64207	mdanderson.org	37	14	77493785	77493785	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_024496	exon1	c.G351A	p.Q117Q	CTGCTGCTGCTGC		19	3	0.16	16	0	0				1	0	0.00			
TDP1	55775	mdanderson.org	37	14	90499479	90499479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_018319	exon16	c.G1674T	p.K558N	ACAGAAGTTCTTC		106	5	0.05	69	0	0				14	0	0.00			
TRMT61A	115708	mdanderson.org	37	14	104001019	104001019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_152307	exon4	c.G731T	p.S244I	CTGTCAGCCTGCC		67	10	0.15	35	3	0.0857142857				13	0	0.00			
TMEM179	388021	mdanderson.org	37	14	105070822	105070822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_207379	exon1	c.C257A	p.A86D	TGCGCGGCGGCCA		44	3	0.07	38	0	0				0	0				
.	0	broad.mit.edu	37	15	79023030	79023031	+	RNA	INS	-	-	G	rs35207108	bycluster;by1000genomes	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	CATGCCCGGCCCT		7	4	0.57	4	0	0				0	0				
MSLN	10232	mdanderson.org	37	16	816065	816065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_005823	exon12	c.C902T	p.A301V	AGACAGCCTGTCC		35	3	0.09	33	0	0				0	0				
MEFV	4210	broad.mit.edu	37	16	3304501	3304501	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	MEFV,NS,carcinoma,-2,1	MEFV	NM_000243	exon2	c.C567A	p.G189G	GCAGGGGCCGGGG		38	4	0.11	29	2	0.0689655172		170	1	0	0				
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3830851	3830851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_004380	exon8	c.G1705A	p.G569S	TGTTACCAGAGTT		127	15	0.12	89	0	0				1	0	0.00			
SH2B1	25970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28883695	28883695	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001145796	exon7	c.C1698T	p.L566L	CGTCCTCACCTTC		83	13	0.16	74	0	0				54	1	0.02			
TANGO6	79613	mdanderson.org	37	16	68912021	68912021	+	Missense_Mutation	SNP	G	G	T	rs201648074		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_024562	exon6	c.G1132T	p.V378F	TTGTAGGTTCTGG		86	5	0.06	83	0	0	0.002			0	0				
PIEZO1	9780	broad.mit.edu	37	16	88800398	88800398	+	Missense_Mutation	SNP	G	G	C	rs62639697	byfrequency	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	PIEZO1	NM_001142864	exon17	c.C2245G	p.Q749E	CCTCCTGCTGCTG		79	3	0.04	75	0	0		79		0	0				
GAS8	2622	mdanderson.org	37	16	90097758	90097758	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001481	exon3	c.G142T	p.E48X	CGGGAGGAACGAA		44	3	0.07	43	0	0				1	0	0.00			
CTC1	80169	mdanderson.org	37	17	8138529	8138529	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_025099	exon8	c.C1281A	p.G427G	AACGGCGCCACGG		33	3	0.09	31	0	0				1	0	0.00			
MYO1D	4642	broad.mit.edu	37	17	31105537	31105537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	MYO1D	NM_015194	exon3	c.C359T	p.A120V	ATGGCCGCAATAT		279	4	0.01	221	0	0		93		2	0	0.00			
AOC3	8639	broad.mit.edu	37	17	41004673	41004673	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	AOC3	NM_003734	exon1	c.T1313C	p.L438P	AGGGCCTCCCCCT		122	4	0.03	103	1	0.0097087379		88		1	0	0.00			
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	51901904	51901904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	KIF2B,NS,carcinoma,0,2	KIF2B	NM_032559	exon1	c.C1510T	p.R504W	GTGCTCCGGGACT		95	4	0.04	58	0	0		0	2	0	0				
AMZ2P1	0	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	A	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	TTCCACAAGTCTC		94	4	0.04	68	0	0				41	0	0.00			
SDK2	54549	broad.mit.edu	37	17	71386453	71386453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	SDK2	NM_001144952	exon29	c.G4165T	p.A1389S	CCAAGGCCTCGGC		36	6	0.17	54	2	0.037037037		219		0	0				
LLGL2	3993	broad.mit.edu;mdanderson.org	37	17	73568068	73568068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	LLGL2	NM_004524	exon19	c.G2383T	p.V795L	CTCGAAGTGGCCC		35	3	0.09	20	0	0		155		66	0	0.00			
RAC3	5881	broad.mit.edu	37	17	79991663	79991663	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	RAC3	NM_005052	exon6	c.G537T	p.P179P	CTGCCCGCCCCCA		138	10	0.07	91	3	0.032967033		8		71	0	0.00			
TCEB3B	51224	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	44560885	44560885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_016427	exon1	c.G751A	p.E251K	ATTTCTCCCTGAT		150	16	0.11	94	0	0				0	0				
CXXC1	30827	hgsc.bcm.edu	37	18	47812290	47812290	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	CXXC1,NS,carcinoma,0,1	CXXC1	NM_001101654	exon5	c.G468C	p.Q156H	CTGCTGCTGGTGA		85	4	0.05	63	1	0.0158730159		0	1	26	0	0.00			
MED16	10025	hgsc.bcm.edu	37	19	879943	879943	+	Missense_Mutation	SNP	G	G	C	rs76403059	bycluster	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	MED16,colon,carcinoma,0,1	MED16	NM_005481	exon8	c.C1347G	p.H449Q	CTTCCCGTGGCTG		130	6	0.05	111	2	0.018018018		0	1	7	0	0.00			
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	1487795	1487795	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_017573	exon5	c.C582G	p.S194R	CTCTTTGCTGGGG		42	4	0.10	27	0	0				1	0	0.00			
ILF3	3609	bcgsc.ca;mdanderson.org	37	19	10798068	10798068	+	Silent	SNP	T	T	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	ILF3	NM_017620	exon18	c.T2118G	p.G706G	TGGCGGTGGCGGC		111	16	0.14	81	5	0.0617283951		99		5	0	0.00			
TECR	9524	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	14675087	14675087	+	Silent	SNP	C	C	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	TECR,NS,carcinoma,+1,1	TECR	NM_138501	exon7	c.C477A	p.R159R	TTTGCGCAACATC		50	6	0.12	36	0	0		1	1	217	32	0.15			
SPRED3	399473	hgsc.bcm.edu;mdanderson.org	37	19	38882866	38882866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	SPRED3_ENST00000396877,bladder,carcinoma,-1,2	SPRED3_ENST00000396877	NM_001042522	exon3	c.T361C	p.S121P	ACCCCCTCCTCCT		64	4	0.06	54	1	0.0185185185		-1	2	0	0				
PAFAH1B3	5050	mdanderson.org	37	19	42806188	42806188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_002573	exon2	c.C82A	p.H28N	ACCGATGGTGCTG		55	3	0.05	37	0	0				13	0	0.00			
MEGF8	1954	mdanderson.org	37	19	42838351	42838351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	MEGF8_ENST00000334370,NS,carcinoma,-1,2	MEGF8_ENST00000334370	NM_001271938	exon3	c.G544T	p.G182C	AGCCACGGCACCT		35	3	0.09	33	0	0		-1	2	0	0				
KLK12	43849	ucsc.edu;bcgsc.ca	37	19	51534068	51534068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	KLK12	NM_145895	exon4	c.C307T	p.R103C	CGGGACGCCGCCT		37	4	0.11	67	0	0		30		0	0				
ZNF880	400713	broad.mit.edu;mdanderson.org	37	19	52888125	52888125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	ZNF880	NM_001145434	exon4	c.C1292T	p.T431I	TTCACACTGGAGA		56	6	0.11	67	0	0		45		1	0	0.00			
.	0	broad.mit.edu	37	2	38710019	38710019	+	RNA	DEL	T	T	-	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	AAAAAATAAATAA		90	16	0.18	41	0	0				1	0	0.00			
IL36A	27179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	113763655	113763655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_014440	exon2	c.A115G	p.M39V	GACCGTATGTCTC		107	5	0.05	66	0	0				0	0				
HOXD9	3235	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	176988212	176988212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_014213	exon1	c.C716T	p.S239L	GCGGCTCGTCGGA		185	21	0.11	114	0	0				0	0				
PRR21	643905	hgsc.bcm.edu	37	2	240982009	240982009	+	Missense_Mutation	SNP	G	G	A	rs202192655		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	PRR21,NS,malignant_melanoma,0,2	PRR21	NM_001080835	exon1	c.C391T	p.P131S	CCGTGGGTGAAGA		20	5	0.25	8	1	0.125		0	2	0	0				
NINL	22981	broad.mit.edu	37	20	25436407	25436407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	NINL	NM_025176	exon23	c.C3859A	p.Q1287K	TCAGCTGTTTCTC		153	7	0.05	118	3	0.0254237288		148		4	1	0.25			
SERINC3	10955	broad.mit.edu	37	20	43142664	43142664	+	Missense_Mutation	SNP	G	G	T	rs370153515	alternate_allele	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	SERINC3	NM_006811	exon2	c.C57A	p.S19R	GGCACCGCTGCAG		116	4	0.03	94	0	0		42		0	0				
SLC2A10	81031	broad.mit.edu	37	20	45354027	45354027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	SLC2A10	NM_030777	exon2	c.G352A	p.A118T	TCCATGGCTTGCT		58	3	0.05	52	0	0		75		0	0				
SPO11	23626	mdanderson.org	37	20	55904934	55904934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_012444	exon1	c.C11T	p.A4V	CCTTTGCACCTAT		55	3	0.05	52	0	0				0	0				
BAGE	85319	broad.mit.edu	37	21	11083997	11083998	+	RNA	INS	-	-	G	rs370113266		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	TTTGTGTTTGTGT		6	2	0.33	4	0	0				0	0				
BAGE	85319	broad.mit.edu	37	21	11083998	11083999	+	RNA	INS	-	-	GTG	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	TTGTGTTTGTGTG		6	2	0.33	4	0	0				0	0				
POM121L1P	25812	mdanderson.org	37	22	22985347	22985347	+	RNA	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	GTGGCTGAGGCCC		21	2	0.10	12	0	0				0	0				
TTC28	23331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28501285	28501285	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001145418	exon8	c.G3289C	p.V1097L	ACATGACTGCTTG		382	37	0.10	241	0	0				0	0				
NELFA	7469	mdanderson.org	37	4	1989687	1989687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_005663	exon4	c.C625A	p.H209N	TGGCGTGGAAGGG		40	4	0.10	31	0	0				10	0	0.00			
BEND4	389206	hgsc.bcm.edu;broad.mit.edu	37	4	42145741	42145742	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	BEND4	NM_001159547	exon3	c.758_759del	p.253_253del	TTTTGTAGAGAGT		148	12	0.08	114	0	0		67		6	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu	37	4	55599320	55599320	+	Missense_Mutation	SNP	G	G	T	rs121913506	bycluster	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446T	p.D816Y	GCCAGAGACATCA		116	11	0.09	62	1	0.0161290323		0	932	1	0	0.00			
DSPP	1834	bcgsc.ca	37	4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	DSPP	NM_014208	exon5	c.G3139A	p.D1047N	AGCAGCGATAGCA		71	7	0.10	50	1	0.02		174		0	0				
ANK2	287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	114271404	114271404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001148	exon37	c.A4425C	p.K1475N	AGAAAAAAGTAAG		55	5	0.09	34	0	0				0	0				
DDX60	55601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169146761	169146761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_017631	exon34	c.G4600A	p.E1534K	AGTCCTCCATAAT		132	16	0.12	116	0	0				3	2	0.67			
BRD9	65980	mdanderson.org	37	5	884095	884095	+	Missense_Mutation	SNP	G	G	T	rs372444870	alternate_allele	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_023924	exon8	c.C924A	p.D308E	AGCTTCGTCAGCT		44	3	0.07	50	0	0				6	0	0.00			
SEPT8	23176	mdanderson.org	37	5	132096546	132096546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	SEPT8,NS,carcinoma,0,1	SEPT8	NM_015146	exon9	c.G1234T	p.A412S	GCAAGGCCTGCGA		116	14	0.12	61	1	0.0163934426		0	1	0	0				
FAM53C	51307	broad.mit.edu	37	5	137681245	137681245	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	FAM53C	NM_001135647	exon4	c.G868T	p.E290X	CGCCACGAGGAAG		113	3	0.03	99	0	0		35		2	0	0.00			
KIAA1191	57179	mdanderson.org	37	5	175777718	175777718	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_020444	exon6	c.G357A	p.Q119Q	AAAATGCTGAATG		46	3	0.07	39	0	0				13	0	0.00			
LOC202181	0	broad.mit.edu	37	5	177099140	177099140	+	RNA	SNP	T	T	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	ACGATGTAATCCT		31	4	0.13	16	0	0				0	0				
RPP40	10799	ucsc.edu	37	6	4995431	4995431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	RPP40	NM_006638	exon8	c.G973A	p.E325K	TTTTTTCCCAAGA		122	1	0.01	101	1	0.0099009901		36		71	7	0.10			
PFDN6	10471	broad.mit.edu	37	6	33258148	33258148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	PFDN6	NM_001185181	exon3	c.G181T	p.G61C	CTTCTGGGTCCGG		186	5	0.03	102	0	0		9		770	1	0.00			
SLC26A8	116369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35960389	35960389	+	Silent	SNP	A	A	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_052961	exon6	c.T690C	p.S230S	GTAAGCACTCATT		57	9	0.16	60	0	0				0	0				
SMPD2	6610	broad.mit.edu	37	6	109764880	109764880	+	Silent	SNP	A	A	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	SMPD2	NM_003080	exon10	c.A1044G	p.G348G	TGGAGGAGGGGCC		106	4	0.04	64	0	0		25		83	2	0.02			
TTYH3	80727	mdanderson.org	37	7	2686862	2686862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_025250	exon3	c.G380A	p.R127H	CCAACCGCACGGT		43	3	0.07	29	0	0				4	0	0.00			
TSPAN13	27075	broad.mit.edu	37	7	16817466	16817466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	TSPAN13	NM_014399	exon4	c.G356T	p.R119L	GTGCTCGAAATGA		253	5	0.02	128	0	0		13		0	0				
.	0	broad.mit.edu	37	7	57701205	57701207	+	RNA	DEL	CAG	CAG	-	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	CAG	CAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	ATGGCACAGTGCT		6	2	0.33	8	0	0				0	0				
COL26A1	136227	broad.mit.edu	37	7	101091318	101091318	+	RNA	DEL	A	A	-	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	GAAGCCAAAAACA		6	2	0.33	5	0	0				0	0				
NUP205	23165	broad.mit.edu	37	7	135291662	135291662	+	Splice_Site	SNP	A	A	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	NUP205	NM_015135	exon21	c.A3069G	p.P1023P	AGATCCAGGTATA		160	3	0.02	93	0	0		198		0	0				
GIMAP6	474344	broad.mit.edu	37	7	150325069	150325069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	GIMAP6	NM_001244072	exon3	c.A827G	p.E276G	TGCTCCTCCCCCT		149	5	0.03	93	2	0.0215053763		60		1	0	0.00			
ATG9B	285973	broad.mit.edu	37	7	150715013	150715013	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	ATG9B	.	.	.	.	TCCCCAACCCCAG		90	6	0.07	66	2	0.0303030303		51		1	0	0.00			
MFHAS1	9258	broad.mit.edu	37	8	8747748	8747748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	MFHAS1	NM_004225	exon1	c.C2821A	p.L941M	TGGACAGGGTGTC		244	4	0.02	182	0	0		58		4	0	0.00			
DUSP26	78986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	33449560	33449560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_024025	exon4	c.C607A	p.R203S	GCCTGCGGTCCAG		83	11	0.13	71	0	0				0	0				
EPPK1	83481	bcgsc.ca;mdanderson.org	37	8	144940501	144940501	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	EPPK1	NM_031308	exon1	c.C6921T	p.V2307V	GCCGGTGACGGCG		150	12	0.08	89	1	0.0112359551		199		3	0	0.00			
PLEC	5339	broad.mit.edu;mdanderson.org	37	8	144996952	144996952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	PLEC	NM_201380	exon31	c.C7556A	p.A2519D	CGCTCAGCCTCAG		62	10	0.16	37	3	0.0810810811		1144		5	0	0.00			
.	0	broad.mit.edu	37	9	66518311	66518312	+	RNA	INS	-	-	TATTTTATTTTATTT	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	TGTTTACTATTTT		6	2	0.33	7	0	0				0	0				
LOC100132077	0	broad.mit.edu	37	9	97109268	97109275	+	RNA	DEL	AAAAAAGA	AAAAAAGA	-	rs371617960	bycluster;alternate_allele	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	AAAAAAGA	AAAAAAGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	AAAAAGAAAAAAG		6	2	0.33	8	0	0				0	0				
tRNA-Cys	0	hgsc.bcm.edu	37	MT	5824	5824	+	RNA	SNP	G	G	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	CTCGGAGCTGGTA		234	60	0.26	94	0	0				0	0				
SHROOM2	357	broad.mit.edu	37	X	9863376	9863376	+	Silent	SNP	T	T	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	SHROOM2	NM_001649	exon4	c.T1428G	p.G476G	GCAGGGTCCCCGG		69	12	0.17	54	5	0.0925925926		139		1	0	0.00			
.	0	bcgsc.ca	37	X	27537820	27537820	+	RNA	SNP	G	G	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	AAAAATGCGCGTG		50	9	0.18	49	0	0				0	0				
FOXP3	50943	broad.mit.edu	37	X	49113925	49113925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	FOXP3	NM_014009	exon4	c.C413A	p.T138N	ACCCCAGTGGCGG		224	5	0.02	128	0	0		26		0	0				
H2BFM	286436	broad.mit.edu	37	X	103294936	103294936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	H2BFM	NM_001164416	exon1	c.G393T	p.K131N	GGGCAAGCTCGCC		56	8	0.14	40	0	0		25		1	0	0.00			
ARHGAP4	393	broad.mit.edu	37	X	153187251	153187251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	ARHGAP4	NM_001666	exon2	c.C79A	p.Q27K	TCAGCTGCCAGCG		35	7	0.20	17	1	0.0588235294		103		7	0	0.00			
