Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MST1L	0	broad.mit.edu	37	1	17083496	17083496	+	RNA	SNP	A	A	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	.	.	.	.	GCAAAAACAGTGG		12	4	0.33	21	0	0				3	0	0.00			
KIF17	57576	broad.mit.edu	37	1	21016763	21016763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	KIF17	NM_020816	exon7	c.G1299T	p.R433S	CTCCAGCCTGGCC		133	6	0.05	121	1	0.0082644628		130		4	0	0.00			
SPOCD1	90853	broad.mit.edu	37	1	32259795	32259795	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	SPOCD1,NS,carcinoma,-1,1	SPOCD1	NM_144569	exon11	c.C2313A	p.P771P	TGCGATGGGCAGG		251	5	0.02	166	0	0		109	1	4	0	0.00			
SERBP1	26135	broad.mit.edu	37	1	67895862	67895862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	SERBP1	NM_015640	exon1	c.C122A	p.A41D	CCGCCGGCTTCTT		139	6	0.04	119	3	0.025210084		31		57	0	0.00			
ABCD3	5825	broad.mit.edu	37	1	94964163	94964163	+	Silent	SNP	A	A	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	ABCD3	NM_002858	exon17	c.A1392T	p.R464R	GGTTCGATCTGGG		174	14	0.08	140	7	0.05		62		0	0				
ADAR	103	broad.mit.edu	37	1	154574388	154574388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	ADAR	NM_001111	exon2	c.C730A	p.P244T	TAAAAGGCTCAAG		172	6	0.03	152	0	0		113		11	0	0.00			
PDDC1	347862	mdanderson.org	37	11	775093	775093	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_182612	exon2	c.C114A	p.A38A	GTTGAAGGCGGTG		39	3	0.08	53	1	0.0188679245				0	0				
C11orf95	65998	broad.mit.edu	37	11	63533381	63533381	+	RNA	SNP	C	C	A	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001144936	exon2	c.G535T	p.A179S	CCTCGGCCTCTCC		38	8	0.21	47	2	0.0425531915				0	0				
FAM76B	143684	mdanderson.org	37	11	95521721	95521721	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_144664	exon2	c.C94A	p.R32R	CAATCCGACATTC		40	3	0.08	30	0	0				0	0				
CBL	867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119149218	119149218	+	Splice_Site	SNP	A	A	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	CBL,colon,carcinoma,0,7	CBL	NM_005188	exon9	c.1228-2A>G	.	TTCTGCAGGAATC		88	46	0.52	159	0	0		0	7	1	1	1.00			
FBXL14	144699	broad.mit.edu	37	12	1703090	1703090	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	FBXL14	NM_152441	exon1	c.T143G	p.V48G	GCCTCCACCCCCC		39	21	0.54	18	8	0.4444444444		19		0	0				
GPR162	27239	broad.mit.edu	37	12	6933751	6933751	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	GPR162,colon,carcinoma,+1,1	GPR162	NM_019858	exon2	c.G687T	p.G229G	GGGTGGGCCAGGG		103	5	0.05	54	1	0.0185185185		55	1	0	0				
FAM186A	121006	hgsc.bcm.edu	37	12	50746615	50746615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001145475	exon4	c.A4000G	p.T1334A	CCTGAGTCTGCGC		122	5	0.04	93	0	0				0	0				
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56995804	56995804	+	Silent	SNP	T	T	C	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_013449	exon20	c.A3603G	p.Q1201Q	CCTAGGTTGCATA		109	17	0.16	100	0	0				8	1	0.13			
NACA	4666	broad.mit.edu	37	12	57111746	57111746	+	Missense_Mutation	SNP	A	A	G	rs2958150		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	NACA	.	.	.	.	TGGGGGATGGGGT		179	13	0.07	128	9	0.0703125		131		0	0				
.	0	broad.mit.edu	37	12	127423596	127423597	+	RNA	DEL	TG	TG	-	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	.	.	.	.	TGTGTTTGTGTGT		6	3	0.50	7	0	0				0	0				
STOML3	161003	mdanderson.org	37	13	39544325	39544325	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_145286	exon5	c.C513A	p.I171I	TACCTGGATGCTA		125	5	0.04	133	0	0				0	0				
EDNRB	1910	mdanderson.org	37	13	78492307	78492307	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	EDNRB_ENST00000377211,NS,carcinoma,0,2	EDNRB_ENST00000377211	NM_001201397	exon2	c.C672T	p.N224N	GGGACCGTTTCGC		85	4	0.05	98	0	0		0	2	0	0				
PSMC1	5700	broad.mit.edu	37	14	90735759	90735759	+	Silent	SNP	T	T	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	PSMC1	NM_002802	exon9	c.T900G	p.G300G	TTCTGGTGGTGAG		34	10	0.29	33	3	0.0909090909		27		60	0	0.00			
BCL11B	64919	hgsc.bcm.edu	37	14	99641568	99641568	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	BCL11B,colon,carcinoma,0,1	BCL11B	NM_138576	exon4	c.G1605C	p.E535D	CTCCTCCTCGTCC		31	4	0.13	21	0	0		0	1	0	0				
DYNC1H1	1778	hgsc.bcm.edu;mdanderson.org	37	14	102505463	102505463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001376	exon60	c.G11332T	p.A3778S	GAGGCTGCAGAGG		86	4	0.05	63	0	0				24	0	0.00			
IFT140	9742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1634408	1634408	+	Missense_Mutation	SNP	T	T	C	rs369998823		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_014714	exon11	c.A1169G	p.K390R	AGGTTCTTCCTGG		25	5	0.20	27	0	0				3	1	0.33			
PSMB10	5699	broad.mit.edu	37	16	67969561	67969561	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	PSMB10	NM_002801	exon5	c.C423A	p.G141G	GTCTACGCCGCCC		136	5	0.04	65	0	0		19		274	0	0.00			
SGSM2	9905	mdanderson.org	37	17	2266364	2266364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001098509	exon6	c.A608G	p.Q203R	TGGTCCAGCGGCA		42	3	0.07	47	0	0				14	0	0.00			
CAMTA2	23125	mdanderson.org	37	17	4883099	4883099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001171167	exon9	c.C1587A	p.F529L	GTCTGGGAATGAT		51	3	0.06	62	0	0				16	0	0.00			
BCL6B	255877	broad.mit.edu	37	17	6930932	6930932	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	BCL6B	NM_181844	exon9	c.G1434T	p.G478G	CGGGGGGCCCTAG		51	6	0.12	51	1	0.0196078431		85		0	0				
SLC35G6	643664	mdanderson.org	37	17	7385311	7385311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001102614	exon2	c.G8T	p.G3V	AGGCTGGCAGTCA		41	3	0.07	88	1	0.0113636364				0	0				
MYH3	4621	mdanderson.org	37	17	10533025	10533025	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	MYH3,NS,carcinoma,0,1	MYH3	NM_002470	exon40	c.C5685A	p.T1895T	GAATTTGGTGAGA		51	3	0.06	79	0	0		0	1	79	0	0.00			
NOS2	4843	mdanderson.org	37	17	26096134	26096134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_000625	exon17	c.T1903C	p.C635R	AGGCGCAGAACCG		35	3	0.09	39	0	0				0	0				
MYO18A	399687	broad.mit.edu;mdanderson.org	37	17	27437604	27437604	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	MYO18A_ENST00000527372,NS,carcinoma,0,2	MYO18A	NM_078471	exon18	c.C2937A	p.G979G	GGCACTGCCTGCG		31	7	0.23	32	2	0.0625		217	2	4	1	0.25			
SLFN14	342618	broad.mit.edu;mdanderson.org	37	17	33875849	33875849	+	Silent	SNP	A	A	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	SLFN14	NM_001129820	exon4	c.T2148C	p.L716L	AGGGGGAAGGCCA		148	5	0.03	80	0	0		43		0	0				
SP2	6668	broad.mit.edu	37	17	45993951	45993951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	SP2	NM_003110	exon3	c.T514C	p.S172P	TCACCGTCCAGTC		114	8	0.07	91	5	0.0549450549		38		5	0	0.00			
MYCBPAP	84073	broad.mit.edu	37	17	48585969	48585969	+	Silent	SNP	T	T	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	MYCBPAP	NM_032133	exon1	c.T63G	p.G21G	GGCGGGTGCGGCG		136	36	0.26	105	20	0.1904761905		135		0	0				
CREB3L3	84699	ucsc.edu	37	19	4168454	4168454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	CREB3L3	NM_032607	exon6	c.G821T	p.R274L	AGACTCGGTGGGT		42	4	0.10	48	0	0		53		0	0				
PLIN5	440503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4529156	4529157	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	GC	GC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	PLIN5,NS,carcinoma,0,1	PLIN5	NM_001013706	exon5	c.G448T	p.A150F	TCCACAGCATGGC		132	39	0.30	127	0	0		0	1	2	0	0.00			
PTPRS	5802	mdanderson.org	37	19	5246019	5246019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_002850	exon10	c.G756T	p.M252I	GTGGCTCATGGGC		34	3	0.09	31	0	0				9	0	0.00			
RASAL3	64926	mdanderson.org	37	19	15564108	15564108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_022904	exon15	c.G2480A	p.R827H	CGGCGGCGGGCAG		10	2	0.20	16	0	0				1	0	0.00			
ANKLE1	126549	broad.mit.edu	37	19	17397488	17397501	+	Frame_Shift_Del	DEL	TGTGTGTGTGTGTT	TGTGTGTGTGTGTT	-	rs35771129	alternate_allele	TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	TGTGTGTGTGTGTT	TGTGTGTGTGTGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	ANKLE1	.	.	.	.	TGTGTGTGTGTGT		14	7	0.50	12	0	0		27		9	0	0.00			
ZNF90	7643	mdanderson.org	37	19	20216113	20216113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_007138	exon3	c.G214A	p.A72T	ATGATTGCCAAAT		42	3	0.07	36	1	0.0277777778				2	0	0.00			
ZNF43	7594	mdanderson.org	37	19	21991246	21991246	+	Silent	SNP	A	A	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001256653	exon4	c.T1620C	p.T540T	AGTATGAGTTATC		27	3	0.11	26	0	0				16	0	0.00			
.	0	broad.mit.edu	37	19	22788909	22788910	+	RNA	INS	-	-	T	rs3830337	bycluster;by1000genomes	TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	.	.	.	.	GCCGAGGTGTTGG		6	2	0.33	4	0	0				0	0				
ETV2	2116	broad.mit.edu	37	19	36135558	36135558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	ETV2	NM_014209	exon7	c.C833A	p.A278D	AGGTGGCTCGGCT		73	10	0.14	57	2	0.0350877193		11		10	0	0.00			
ZNF146	7705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36727687	36727687	+	Silent	SNP	C	C	T	rs369142601		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001099638	exon3	c.C345T	p.L115L	AAACCTCATCAGA		98	15	0.15	115	0	0				106	27	0.25			
FAM98C	147965	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	38899499	38899499	+	Missense_Mutation	SNP	C	C	T	rs200637370		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	FAM98C,NS,carcinoma,0,1	FAM98C	NM_174905	exon8	c.C1027T	p.R343C	TGGGGTCGCAAGA		139	29	0.21	127	0	0		0	1	51	12	0.24			
DYRK1B	9149	broad.mit.edu	37	19	40316422	40316422	+	Missense_Mutation	SNP	T	T	G	rs200959786		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	DYRK1B	NM_004714	exon11	c.A1823C	p.D608A	GCAGGGTCATCAG		50	14	0.28	33	5	0.1515151515		114		93	6	0.06			
LRRC4B	94030	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51020870	51020870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	LRRC4B	NM_001080457	exon3	c.C2100A	p.F700L	GCTCTTGAAGAGC		49	5	0.10	47	0	0		89		40	0	0.00			
.	0	broad.mit.edu	37	19	52646133	52646133	+	RNA	DEL	T	T	-	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	.	.	.	.	GGAGAATTTTTTT		9	3	0.33	5	0	0				1	0	0.00			
CAPN14	440854	broad.mit.edu	37	2	31428301	31428301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	CAPN14,colon,carcinoma,0,1	CAPN14	NM_001145122	exon2	c.C13A	p.P5T	AAGGTGGCCACAG		263	6	0.02	185	1	0.0054054054		36	1	0	0				
RGPD2	729857	broad.mit.edu	37	2	88125234	88125234	+	Silent	SNP	T	T	C	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	RGPD2	NM_001078170	exon1	c.A15G	p.K5K	GTAGGCTTTGCTG		79	10	0.13	56	1	0.0178571429		14		0	0				
RBMS1	5937	hgsc.bcm.edu;mdanderson.org	37	2	161223862	161223862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_016836	exon2	c.C116A	p.P39H	GTGCTGGGACTGG		64	4	0.06	63	0	0				1	0	0.00			
RAPH1	65059	broad.mit.edu	37	2	204322299	204322299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	RAPH1	NM_203365	exon10	c.A1268G	p.K423R	GTTTCTTTTTTCC		87	3	0.03	61	2	0.0327868852		118		0	0				
NSFL1C	55968	mdanderson.org	37	20	1424505	1424505	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_016143	exon9	c.C1002A	p.A334A	GCTGGTGGCAGCC		46	3	0.07	42	0	0				215	0	0.00			
SOGA1	140710	broad.mit.edu;mdanderson.org	37	20	35438485	35438485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	SOGA1	NM_080627	exon7	c.C2483A	p.A828D	GCCTCAGCCAGCA		28	6	0.21	27	0	0		136		0	0				
NFATC2	4773	mdanderson.org	37	20	50049146	50049146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_012340	exon9	c.C2180A	p.P727H	TGGCAGGGAGCCA		33	3	0.09	21	0	0				0	0				
DSCAM	1826	broad.mit.edu	37	21	41719815	41719815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	DSCAM	NM_001271534	exon6	c.T992C	p.V331A	AAGGAAACTTGGC		128	4	0.03	93	0	0		347		0	0				
PI4KAP2	0	broad.mit.edu	37	22	21829278	21829279	+	RNA	DEL	AT	AT	-	rs67076732	alternate_allele	TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	AT	AT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	PI4KAP2	.	.	.	.	ACATAAATAGAGG		22	7	0.32	22	3	0.1363636364		11		3	0	0.00			
ZNF280B	140883	bcgsc.ca	37	22	22842518	22842518	+	Silent	SNP	G	G	A	rs73156173	bycluster;byfrequency	TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	ZNF280B	NM_080764	exon4	c.C1206T	p.P402P	CACATAGGGCATT		163	15	0.09	138	2	0.0144927536		67		3	2	0.67			
ZNF280B	140883	mdanderson.org	37	22	22843071	22843071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	ZNF280B,NS,carcinoma,0,1	ZNF280B	NM_080764	exon4	c.C653A	p.P218H	TTTGAGGGTGTAC		140	5	0.04	117	0	0		0	1	0	0				
MMP11	4320	broad.mit.edu	37	22	24121476	24121476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	MMP11	NM_005940	exon2	c.C211A	p.P71T	CCCCGGCCTGCCA		72	9	0.13	37	1	0.027027027		53		0	0				
MN1	4330	mdanderson.org	37	22	28195192	28195192	+	Missense_Mutation	SNP	G	G	T	rs375740551		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_002430	exon1	c.C1340A	p.A447E	GGGGGCGCGTCGA		42	3	0.07	41	0	0				0	0				
SYN3	8224	broad.mit.edu	37	22	32923915	32923915	+	Silent	SNP	T	T	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	SYN3	NM_133633	exon11	c.A1308C	p.P436P	CGGAGGTGGGCGT		144	23	0.16	120	19	0.1583333333		77		0	0				
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46763694	46763694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_014246	exon28	c.G8011A	p.G2671R	GCAGCCCCAGCAG		107	26	0.24	75	0	0				4	2	0.50			
.	0	broad.mit.edu	37	3	10035779	10035783	+	RNA	DEL	AGTCT	AGTCT	-	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	AGTCT	AGTCT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	.	.	.	.	AAGAGAAGTCTGA		14	5	0.36	11	0	0				0	0				
MAP4	4134	broad.mit.edu;mdanderson.org	37	3	47963340	47963340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	MAP4	NM_001134364	exon5	c.C444A	p.D148E	TGCCAGGTCATCA		63	4	0.06	99	0	0		176		9	0	0.00			
NT5DC2	64943	mdanderson.org	37	3	52558632	52558632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001134231	exon14	c.C1528A	p.L510I	AGCTGAGGGAGGC		51	3	0.06	45	0	0				829	1	0.00			
CHCHD6	84303	broad.mit.edu;bcgsc.ca	37	3	126571534	126571534	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	CHCHD6	NM_032343	exon5	c.C456T	p.D152D	CCGTGACACCTTC		92	28	0.30	94	2	0.0212765957		18		14	10	0.71			
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142186852	142186852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001184	exon39	c.T6611C	p.M2204T	TTTTTCATATGAA		48	21	0.44	45	0	0				2	2	1.00			
TP63	8626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	189597936	189597936	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001114979	exon11	c.C1433G	p.S478C	GACATTCCAAGCC		129	33	0.26	129	0	0				0	0				
SDHAP2	0	broad.mit.edu;ucsc.edu	37	3	195400728	195400728	+	RNA	SNP	A	A	G	rs77981248		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	.	.	.	.	GTGCCCAGCCTGT		68	9	0.13	61	1	0.0163934426				6	0	0.00			
ZDHHC11	79844	mdanderson.org	37	5	840644	840644	+	Missense_Mutation	SNP	G	G	C	rs200038670	bycluster	TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_024786	exon5	c.C750G	p.H250Q	GCCCAGGTGCACC		26	2	0.08	28	1	0.0357142857	0.001			15	3	0.20			
IRX2	153572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	2749803	2749803	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	IRX2,NS,carcinoma,0,1	IRX2	NM_001134222	exon2	c.G348A	p.A116A	GCGGTACGCGGGG		52	16	0.31	57	0	0		0	1	1	0	0.00			
DMGDH	29958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78347182	78347182	+	Silent	SNP	T	T	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_013391	exon5	c.A673C	p.R225R	CTGACCTGGCTTT		112	36	0.32	105	0	0				0	0				
NDST1	3340	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	149915275	149915277	+	In_Frame_Del	DEL	CCA	CCA	-	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	CCA	CCA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	NDST1	NM_001543	exon6	c.1264_1266del	p.422_422del	GCATTCCCACAGA		97	28	0.29	106	0	0		79		3	0	0.00			
F13A1	2162	mdanderson.org	37	6	6248642	6248642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_000129	exon6	c.G701A	p.G234D	AGGATGCCATCTT		36	3	0.08	32	0	0				0	0				
BTN2A3P	0	broad.mit.edu	37	6	26422353	26422353	+	RNA	SNP	C	C	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	BTN2A3,NS,carcinoma,0,9	.	.	.	.	.	ATGGAACCAGCTG		69	6	0.09	80	2	0.025			9	1	0	0.00			
DPCR1	135656	mdanderson.org	37	6	30920763	30920763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_080870	exon3	c.C4051T	p.R1351W	ATGATGCGGACAC		81	4	0.05	80	1	0.0125				0	0				
GPR6	0	broad.mit.edu	37	6	110300642	110300642	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	GPR6,caecum,carcinoma,+2,1	GPR6	NM_005284	exon1	c.G327T	p.V109V	GTTCGTGCTGGTA		54	6	0.11	45	0	0		46	1	0	0				
MUC17	140453	hgsc.bcm.edu	37	7	100679221	100679221	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001040105	exon3	c.G4524T	p.T1508T	CTCAACGCCTAGT		73	6	0.08	90	0	0				0	0				
MDFIC	29969	mdanderson.org	37	7	114563096	114563096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001166346	exon2	c.G335T	p.G112V	TGTCCGGCGCGGG		12	2	0.17	22	0	0				0	0				
EPHB6	2051	bcgsc.ca;mdanderson.org	37	7	142562074	142562074	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	EPHB6	NM_004445	exon7	c.C516T	p.S172S	CTCCTCCTCTTCT		106	5	0.05	71	1	0.014084507		168		4	0	0.00			
KCNH2	3757	hgsc.bcm.edu;mdanderson.org	37	7	150645544	150645544	+	Missense_Mutation	SNP	G	G	T	rs199473433	alternate_allele	TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	KCNH2,NS,adenocarcinoma,+1,1	KCNH2	NM_000238	exon11	c.C2680A	p.R894S	CCGTGCGCCTGCG		30	2	0.07	23	0	0		1	1	2	0	0.00			
SFRP1	6422	broad.mit.edu	37	8	41166547	41166547	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	SFRP1_ENST00000220772,NS,carcinoma,0,3	SFRP1	NM_003012	exon1	c.C132A	p.G44G	GTACGGGCCGATG		32	7	0.22	19	0	0		60	3	0	0				
AGO2	27161	broad.mit.edu	37	8	141551316	141551316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_012154	exon15	c.C1981A	p.P661T	GGGTGGGCTTGAA		83	7	0.08	54	1	0.0185185185				6	0	0.00			
UBQLN1	29979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	86294939	86294939	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	UBQLN1	NM_053067	exon4	c.463delC	p.L155fs	TGCAAGTCCCCCA		83	19	0.23	87	0	0		49		3	0	0.00			
UBQLN1	29979	bcgsc.ca	37	9	86294940	86294940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	UBQLN1	NM_053067	exon4	c.G461T	p.G154V	GCAAGTCCCCCAA		82	19	0.23	86	0	0		49		3	0	0.00			
UBQLN1	29979	hgsc.bcm.edu	37	9	86294943	86294943	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	UBQLN1	NM_053067	exon4	c.459delG	p.G153fs	AGTCCCCCAAGGC		85	0	0.00	84	0	0		49		5	0	0.00			
FBP2	8789	mdanderson.org	37	9	97325644	97325644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_003837	exon6	c.C805A	p.Q269K	TCTTCTGGTTGGC		56	3	0.05	64	0	0				0	0				
FIBCD1	84929	bcgsc.ca	37	9	133805022	133805022	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	FIBCD1	NM_001145106	exon3	c.C484A	p.R162R	CCTTCCGCAGCCC		44	4	0.09	55	0	0		34		1	0	0.00			
SETX	23064	mdanderson.org	37	9	135203904	135203904	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_015046	exon10	c.C3081A	p.I1027I	ACTCAGGATTCTT		43	3	0.07	48	0	0				0	0				
ENTPD2	954	ucsc.edu;bcgsc.ca	37	9	139944978	139944978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	ENTPD2	NM_203468	exon6	c.C787A	p.H263N	AGGGGTGGAAGCC		30	4	0.13	39	0	0		30		0	0				
RNR2	6053	hgsc.bcm.edu;broad.mit.edu	37	MT	3150	3150	+	RNA	SNP	T	T	C	rs28656364	bycluster	TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	.	.	.	.	AAGGCCTACTTCA		28	4	0.14	10	0	0				0	0				
DMD	1756	broad.mit.edu	37	X	31462743	31462743	+	Splice_Site	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	DMD	NM_004006	exon60	c.C8939A	p.A2980E	CGAAGTGCCTGTG		63	7	0.11	35	2	0.0571428571		2127		4	0	0.00			
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	32663131	32663131	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_004006	exon10	c.G1099T	p.E367X	AAATCTCTCCTTG		122	52	0.43	74	0	0				6	2	0.33			
RBM3	5935	broad.mit.edu	37	X	48434994	48434994	+	Splice_Site	SNP	T	T	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	RBM3	NM_006743	exon5	c.413+2T>G	.	GGCAGGTGGGTAG		42	7	0.17	24	4	0.1666666667		20		0	0				
HUWE1	10075	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	53585984	53585984	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	HUWE1	NM_031407	exon58	c.G7953A	p.W2651X	TTCTGTCCAGCGG		169	68	0.40	119	1	0.0084033613		724		3	0	0.00			
FGD1	2245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54476099	54476099	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_004463	exon14	c.A2141T	p.N714I	GGAGAGTTGGGTG		57	20	0.35	57	0	0				22	8	0.36			
AWAT1	158833	mdanderson.org	37	X	69458085	69458085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001013579	exon5	c.G484T	p.A162S	CAGCCAGCCATCA		51	3	0.06	26	0	0				0	0				
PNMA3	29944	broad.mit.edu	37	X	152226011	152226011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	PNMA3	NM_013364	exon2	c.A599G	p.E200G	AGGGGGAAAAGAG		55	17	0.31	48	13	0.2708333333		81		3	0	0.00			
