Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
AGBL4	84871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	50163073	50163073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_032785	exon3	c.A194G	p.E65G	TCATACTCAAACT		347	33	0.10	262	0	0				1	0	0.00			
VASH2	79805	mdanderson.org	37	1	213125107	213125107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_024749	exon2	c.C223A	p.P75T	GTGCACCCTAAGG		35	3	0.09	57	0	0				0	0				
GNPAT	8443	mdanderson.org	37	1	231396280	231396280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_014236	exon3	c.G289T	p.D97Y	TCTGTGGATGTCC		42	3	0.07	33	0	0				3	0	0.00			
PDLIM1	9124	mdanderson.org	37	10	97006973	97006973	+	Silent	SNP	T	T	C	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_020992	exon5	c.A684G	p.K228K	ATTACCTTTTTCT		42	3	0.07	59	0	0				172	0	0.00			
WBP1L	54838	mdanderson.org	37	10	104503811	104503811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_001083913	exon1	c.A1G	p.M1V	AGGGGGATGGAGA		29	4	0.14	32	1	0.03125				1	0	0.00			
MTCH2	23788	mdanderson.org	37	11	47653218	47653218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_014342	exon6	c.C415A	p.H139N	AGGGATGTGTGAT		48	3	0.06	63	0	0				71	0	0.00			
OR5D18	219438	mdanderson.org	37	11	55587808	55587808	+	Missense_Mutation	SNP	C	C	T	rs149397041	alternate_allele	TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	OR5D18,NS,adenocarcinoma,0,7	OR5D18	NM_001001952	exon1	c.C703T	p.R235C	AGTGGGCGCCGCA		115	5	0.04	118	0	0		0	7	0	0				
SORL1	6653	broad.mit.edu;mdanderson.org	37	11	121466453	121466453	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	SORL1	NM_003105	exon32	c.C4491A	p.C1497X	AGATTGCCAGGAT		42	5	0.12	46	0	0		218		0	0				
USP5	8078	mdanderson.org	37	12	6970675	6970675	+	Missense_Mutation	SNP	G	G	T	rs199632125	by1000genomes	TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_003481	exon13	c.G1567T	p.V523F	GAACTGGTTCGGG		46	3	0.07	33	0	0	0			27	0	0.00			
MTIF3	219402	ucsc.edu	37	13	28014392	28014392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	MTIF3	NM_001166263	exon4	c.G194A	p.G65E	TTTTTTCCTTCAT		123	2	0.02	150	0	0		21		133	14	0.11	rescued with RNA-seq		
IRS2	8660	mdanderson.org	37	13	110434970	110434970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_003749	exon1	c.G3431A	p.R1144H	CGGCGGCGGCCCC		33	3	0.09	53	0	0				0	0				
NID2	22795	mdanderson.org	37	14	52535528	52535528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_007361	exon1	c.C185A	p.A62E	GGATTCGCCAGCT		46	3	0.07	48	0	0				0	0				
SYNE2	23224	mdanderson.org	37	14	64626069	64626069	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_015180	exon87	c.G16003T	p.E5335X	AGTTGGGAGAAAC		45	3	0.07	46	0	0				9	0	0.00			
RRN3P2	0	broad.mit.edu	37	16	29102416	29102416	+	RNA	DEL	A	A	-	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	.	.	.	.	AAAAATAAAAAAA		7	2	0.29	6	0	0				0	0				
MYLK3	91807	mdanderson.org	37	16	46762966	46762966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_182493	exon7	c.G1742A	p.S581N	TGCTTGCTCTCGA		43	3	0.07	48	0	0				0	0				
CES4A	283848	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	67036993	67036993	+	Silent	SNP	G	G	T	rs181709052	by1000genomes;alternate_allele	TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_173815	exon6	c.G711T	p.S237S	AGCCTCGGGTCTC		82	4	0.05	152	0	0				2	0	0.00			
ZNF469	84627	mdanderson.org	37	16	88502519	88502519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	ZNF469,NS,carcinoma,-1,2	ZNF469	NM_001127464	exon2	c.C8557A	p.R2853S	GGGAAGCGCTGTG		52	3	0.06	52	0	0		-1	2	0	0				
RASD1	51655	bcgsc.ca	37	17	17398600	17398600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	RASD1	NM_016084	exon2	c.C685T	p.R229W	CGGCCCGCAGCAG		45	4	0.09	73	0	0		8		42	0	0.00			
LRRC37BP1	0	broad.mit.edu	37	17	28960993	28960994	+	RNA	INS	-	-	TTTTC	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	.	.	.	.	TTTTCTTTTTTTT		75	23	0.31	74	0	0				0	0				
SYNRG	11276	mdanderson.org	37	17	35889886	35889886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_198882	exon19	c.A3500G	p.K1167R	GATACCTTTTCTT		44	3	0.07	44	0	0				9	0	0.00			
KANSL1	284058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	44248976	44248976	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_001193466	exon2	c.G534A	p.G178G	TTTTCCCCCATTG		91	5	0.05	99	0	0				10	2	0.20			
TGIF1	7050	mdanderson.org	37	18	3457889	3457889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_170695	exon3	c.C1157T	p.A386V	ATGTTGCACTCAA		16	2	0.13	16	0	0				190	0	0.00			
EPB41L3	23136	mdanderson.org	37	18	5445201	5445201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_012307	exon4	c.C424A	p.H142N	TCAAGTGTTCACA		38	3	0.08	57	1	0.0175438596				0	0				
TTC39C	125488	mdanderson.org	37	18	21698092	21698092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_001135993	exon8	c.G1082T	p.W361L	TAGGTTGGTGCAG		42	3	0.07	52	0	0				6	0	0.00			
SLC25A23	79085	mdanderson.org	37	19	6444206	6444206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_024103	exon9	c.C1178A	p.A393D	TAACTGGCTATCT		32	3	0.09	54	0	0				15	0	0.00			
GPATCH1	55094	mdanderson.org	37	19	33610018	33610018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_018025	exon17	c.G2516T	p.C839F	TCTTCTGCCCCAG		45	3	0.07	35	0	0				66	0	0.00			
ZNF135	7694	broad.mit.edu	37	19	58578438	58578438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	ZNF135_ENST00000401053,right_upper_lobe,carcinoma,0,2	ZNF135	NM_007134	exon4	c.A658G	p.R220G	GGAAAAAGGGAGA		65	3	0.05	71	0	0		159	2	17	0	0.00			
ALK	238	mdanderson.org	37	2	30143262	30143262	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_004304	exon1	c.C264A	p.R88R	CGAGCCGCGGGCC		37	3	0.08	33	0	0				0	0				
RANBP2	5903	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	109382856	109382856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	RANBP2	NM_006267	exon20	c.C5861T	p.T1954I	AATCAACTTCAGG		1062	79	0.07	872	0	0		488		4	0	0.00			
SMOX	54498	hgsc.bcm.edu;broad.mit.edu	37	20	4162476	4162476	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	SMOX	NM_175839	exon4	c.461delT	p.F154fs	GTTCTTCCGGCAC		114	11	0.10	116	0	0		119		9	0	0.00			
TTLL9	164395	mdanderson.org	37	20	30486361	30486361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_001008409	exon4	c.G199T	p.V67L	GTGGAAGTGAAGG		106	5	0.05	147	0	0				0	0				
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50408195	50408195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_020436	exon2	c.G827A	p.S276N	TTCTGGCTGAGCA		47	5	0.11	45	0	0				12	2	0.17			
CDC42EP1	11135	mdanderson.org	37	22	37964167	37964167	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_152243	exon3	c.G516A	p.P172P	AAAGCCGCATGAC		46	3	0.07	70	0	0				45	0	0.00			
ATP2B2	491	mdanderson.org	37	3	10426999	10426999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_001001331	exon8	c.C953T	p.A318V	GCTGCCGCACCGT		46	3	0.07	38	1	0.0263157895				0	0				
STT3B	201595	mdanderson.org	37	3	31641852	31641852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_178862	exon5	c.G778T	p.V260F	CTATAGGTCTCTG		37	3	0.08	40	0	0				9	0	0.00			
PTPN23	25930	mdanderson.org	37	3	47446253	47446253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	PTPN23,NS,carcinoma,0,1	PTPN23	NM_015466	exon3	c.G271A	p.A91T	GAGGCCGCTGTCC		64	5	0.08	81	0	0		0	1	9	0	0.00			
FAM86EP	0	broad.mit.edu	37	4	3955156	3955156	+	RNA	DEL	C	C	-	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	.	.	.	.	CATGGGCCAGCTC		6	2	0.33	7	0	0				0	0				
CCDC96	257236	broad.mit.edu;mdanderson.org	37	4	7044591	7044591	+	Silent	SNP	C	C	T	rs372279731		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	CCDC96	NM_153376	exon1	c.G75A	p.P25P	CTTGGACGGCCGC		27	3	0.11	19	0	0		34		1	0	0.00			
KIT	3815	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	55599320	55599320	+	Missense_Mutation	SNP	G	G	T	rs121913506	bycluster	TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446T	p.D816Y	GCCAGAGACATCA		82	8	0.10	54	0	0		7396	932	26	8	0.31			
ADH1B	125	hgsc.bcm.edu;mdanderson.org	37	4	100232749	100232749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	ADH1B,NS,carcinoma,-1,1	ADH1B	NM_000668	exon7	c.C893A	p.A298D	TGGGAAGCAGGAG		113	5	0.04	114	0	0		-1	1	3	0	0.00			
RXFP1	59350	mdanderson.org	37	4	159573048	159573048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_001253727	exon18	c.G2196T	p.M732I	ATCTATGGACAGC		54	3	0.06	62	0	0				0	0				
DIAPH1	1729	hgsc.bcm.edu	37	5	140953563	140953563	+	Silent	SNP	T	T	A	rs374236039		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	DIAPH1,NS,carcinoma,0,1	DIAPH1	NM_005219	exon16	c.A1854T	p.P618P	AGGAGGTGGAGGA		24	4	0.17	26	0	0		0	1	1	0	0.00			
EEF1A1	1915	hgsc.bcm.edu	37	6	74228474	74228474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	EEF1A1,NS,carcinoma,0,2	EEF1A1	NM_001402	exon5	c.G719A	p.R240H	GTTGGACGAGTTG		113	5	0.04	110	0	0		0	2	5033	0	0.00			
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA		67	10	0.15	54	0	0				12	1	0.08			
GNA12	2768	mdanderson.org	37	7	2883564	2883564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_007353	exon1	c.C232A	p.R78S	TGATGCGCATCTG		52	3	0.06	61	0	0				3	0	0.00			
CHN2	1124	mdanderson.org	37	7	29438103	29438103	+	Splice_Site	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_004067	exon5	c.290+1G>T	.	TCTCAGGTGAGGC		49	3	0.06	40	0	0				1	0	0.00			
WNK2	65268	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	96024344	96024344	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	WNK2	NM_006648	exon12	c.C3315T	p.A1105A	GATCGCCAGCCCT		103	7	0.07	111	1	0.009009009		277		0	0				
FBXW5	54461	mdanderson.org	37	9	139835404	139835404	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_018998	exon9	c.C1677A	p.S559S	AAGCCAGGAGAAG		36	3	0.08	44	0	0				202	0	0.00			
ARHGAP6	395	hgsc.bcm.edu	37	X	11197553	11197553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_006125	exon7	c.G1349T	p.R450L	ATCCCACGGTCAA		68	4	0.06	52	0	0				0	0				
NUDT10	170685	mdanderson.org	37	X	51075901	51075901	+	Silent	SNP	G	G	A	rs2801627	bycluster	TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_153183	exon2	c.G84A	p.E28E	GAGCGAGCGCGAG		202	9	0.04	198	1	0.0050505051				0	0				
AMER1	139285	mdanderson.org	37	X	63410103	63410103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_152424	exon2	c.C3064A	p.R1022S	AGGGACGAGCTAG		49	3	0.06	45	0	0				0	0				
SMARCA1	6594	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128625996	128625996	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	SMARCA1	NM_003069	exon14	c.C1737T	p.L579L	AATTCCGAGACCT		209	27	0.13	189	0	0		126		3	0	0.00			
