Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
BMP8B	656	mdanderson.org	37	1	40226206	40226206	+	Missense_Mutation	SNP	G	G	T	rs147897246	bycluster;byfrequency;alternate_allele	TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	BMP8B,NS,carcinoma,+1,1	BMP8B	NM_001720	exon7	c.C1094A	p.A365E	CAGCACGCCTTGG		52	3	0.06	44	1	0.0227272727		1	1	1	0	0.00			
DDX20	11218	mdanderson.org	37	1	112298730	112298730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_007204	exon1	c.G184T	p.A62S	GAGCCGGCCGACT		21	2	0.10	18	0	0				0	0				
RFWD2	64326	mdanderson.org	37	1	176175758	176175758	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_022457	exon1	c.C357A	p.L119L	GTTGCAGAGGGGG		34	3	0.09	24	0	0				6	0	0.00			
PPP1R15B	84919	broad.mit.edu	37	1	204378635	204378636	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	AT	AT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	PPP1R15B	NM_032833	exon1	c.1904_1905del	p.635_635del	TTTGACATGTGTG		103	8	0.08	83	0	0		67		9	0	0.00			
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	225539365	225539365	+	Silent	SNP	T	T	C	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_001373	exon70	c.T11034C	p.G3678G	AATAGGTGAAAGT		216	18	0.08	154	0	0				0	0				
CNNM1	26507	mdanderson.org	37	10	101089191	101089191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_020348	exon1	c.G47T	p.R16L	GGCTCCGGGACTG		24	3	0.13	22	0	0				0	0				
MUC5B	727897	mdanderson.org	37	11	1258387	1258387	+	Missense_Mutation	SNP	G	G	A	rs202160055		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	MUC5B,NS,carcinoma,+1,4	MUC5B	NM_002458	exon25	c.G3290A	p.R1097H	CCTGCCGCTCCCA		26	3	0.12	15	1	0.0666666667		1	4	0	0				
CCDC73	493860	mdanderson.org	37	11	32739692	32739692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_001008391	exon3	c.G137T	p.X46L	TCTGCTTCCTAAG		40	3	0.08	28	0	0				0	0				
TCN1	6947	hgsc.bcm.edu;mdanderson.org	37	11	59620746	59620746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	TCN1,NS,carcinoma,-2,2	TCN1	NM_001062	exon8	c.G1170T	p.Q390H	TAGGCCCTGAATA		119	5	0.04	92	0	0		-2	2	2	0	0.00			
MAML2	84441	broad.mit.edu	37	11	95825254	95825254	+	Silent	SNP	C	C	T	rs61749250	bycluster	TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	MAML2,caecum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT		97	6	0.06	60	1	0.0166666667		94	2	0	0				
FIGNL2	401720	mdanderson.org	37	12	52215308	52215308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_001013690	exon2	c.C890A	p.P297H	GCGGCGGGGTAGG		15	2	0.13	8	0	0				0	0				
WASH3P	0	broad.mit.edu	37	15	102506389	102506389	+	RNA	SNP	C	C	T	rs11858570	bycluster;byhapmap	TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	WASH3P	.	.	.	.	GCCCTGCAGTACC		48	6	0.13	20	0	0		56		14	0	0.00			
MTSS1L	92154	mdanderson.org	37	16	70697713	70697713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_138383	exon15	c.C2111A	p.T704K	TCCTCCGTGGGGG		19	2	0.11	17	0	0				1	0	0.00			
HYDIN	54768	mdanderson.org	37	16	70972656	70972656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	LOC652153,NS,carcinoma,0,4	LOC652153	NM_001270974	exon44	c.C6856A	p.R2286S	GCTTGCGTTCTGT		63	3	0.05	54	0	0		0	4	0	0				
.	0	broad.mit.edu	37	17	20321835	20321836	+	RNA	INS	-	-	A	rs201907987	by1000genomes	TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	.	.	.	.	AACAAACAAACAA		344	16	0.05	228	4	0.0175438596				0	0				
MRPL45P2	0	broad.mit.edu	37	17	45567245	45567246	+	RNA	INS	-	-	A	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	.	.	.	.	CCATCTCAAAAAA		10	3	0.30	4	0	0				0	0				
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879	bycluster	TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	PRKCSH,caecum,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA		110	6	0.05	67	1	0.0149253731		0	1	4	0	0.00			
TDRD12	91646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33247972	33247972	+	Silent	SNP	A	A	G	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_001110822	exon8	c.A801G	p.Q267Q	GGCACAATCTCTG		404	32	0.08	313	0	0				25	11	0.44			
IGSF23	147710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	45130819	45130819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_001205280	exon3	c.G494A	p.G165E	TCCTGGGAGCCGG		227	10	0.04	178	0	0				0	0				
MIR217	0	broad.mit.edu	37	2	56210467	56210467	+	RNA	DEL	T	T	-	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	.	.	.	.	AATAGCTTTTTAA		6	2	0.33	10	0	0				0	0				
VRK2	7444	bcgsc.ca;mdanderson.org	37	2	58316777	58316777	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	VRK2	NM_001130480	exon7	c.G462T	p.L154L	TGTACTGGAATAT		553	13	0.02	407	0	0		46		8	1	0.13	rescued with RNA-seq		
VRK2	7444	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	58316816	58316816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	VRK2	NM_001130480	exon7	c.A501G	p.I167M	TGATATAAAAGCA		629	16	0.03	458	0	0		46		15	1	0.07	rescued with RNA-seq		
ANKRD36BP2	0	broad.mit.edu	37	2	89104503	89104504	+	RNA	INS	-	-	C	rs149625899	bycluster;by1000genomes	TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	.	.	.	.	ATTTTTTTCAGAT		17	9	0.53	6	0	0				0	0				
DNAJC10	54431	bcgsc.ca;mdanderson.org	37	2	183582950	183582950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	DNAJC10,NS,malignant_melanoma,+1,1	DNAJC10	NM_001271581	exon3	c.C137T	p.A46V	AAACTGCAAGCAG		104	5	0.05	77	0	0		76	1	16	0	0.00			
NCL	4691	hgsc.bcm.edu;broad.mit.edu	37	2	232325382	232325384	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	TCC	TCC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	NCL	NM_005381	exon4	c.808_810del	p.270_270del	GTACCTTCCTCCT		196	16	0.08	142	0	0		80		215	0	0.00			
SNORD119	100113378	hgsc.bcm.edu	37	20	2443617	2443617	+	RNA	SNP	A	A	G	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	.	.	.	.	TCTCAGAGTAATC		68	4	0.06	38	0	0				1	0	0.00			
PMEPA1	56937	broad.mit.edu	37	20	56284608	56284608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	PMEPA1	NM_020182	exon1	c.G31A	p.A11T	CGGCGGCGGTGCT		134	4	0.03	98	0	0		29		1	0	0.00			
ZNF831	128611	mdanderson.org	37	20	57766775	57766775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_178457	exon1	c.G701T	p.C234F	GCAGGTGCCAGGG		56	3	0.05	37	0	0				0	0				
LAMA5	3911	mdanderson.org	37	20	60886347	60886347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_005560	exon73	c.G9959A	p.R3320H	GGCTGACGGCTGC		63	3	0.05	58	0	0				5	0	0.00			
EEF1A2	1917	broad.mit.edu	37	20	62120282	62120282	+	Missense_Mutation	SNP	T	T	G	rs200931909		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	EEF1A2,bladder,carcinoma,0,5	EEF1A2	NM_001958	exon7	c.A1253C	p.Y418S	GGCGGGTACTGGG		113	24	0.21	66	14	0.2121212121		60	5	7	0	0.00			
BAGE	85319	broad.mit.edu	37	21	11064923	11064923	+	RNA	DEL	G	G	-	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	.	.	.	.	CCACTTGGGAGGC		6	2	0.33	5	0	0				0	0				
.	0	broad.mit.edu	37	22	18842958	18842958	+	RNA	SNP	G	G	T	rs3875977	bycluster;byfrequency	TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	.	.	.	.	GAGGTGGCCTGGG		87	8	0.09	60	1	0.0166666667				0	0				
FGD5	152273	mdanderson.org	37	3	14940334	14940334	+	Splice_Site	SNP	G	G	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_152536	exon7	c.3154+1G>T	.	TCACAGGTGGGCC		52	3	0.06	39	0	0				0	0				
SATB1	6304	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	18458414	18458414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	SATB1,NS,carcinoma,-1,1	SATB1	NM_002971	exon3	c.G368A	p.S123N	GCAGAGCTATGTG		99	6	0.06	83	0	0		-1	1	4	0	0.00			
STAB1	23166	mdanderson.org	37	3	52557097	52557097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_015136	exon63	c.G6967T	p.G2323W	TGCAATGGGAAGC		46	3	0.07	57	0	0				9	0	0.00			
TNIP2	79155	mdanderson.org	37	4	2749517	2749517	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_024309	exon2	c.C432T	p.C144C	GGAGCGGCACAGG		42	3	0.07	54	0	0				8	0	0.00			
KIT	3815	broad.mit.edu;bcgsc.ca	37	4	55593628	55593654	+	In_Frame_Del	DEL	GAAACAATTATGTTTACATAGACCCAA	GAAACAATTATGTTTACATAGACCCAA	-	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	GAAACAATTATGTTTACATAGACCCAA	GAAACAATTATGTTTACATAGACCCAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	KIT,caecum,carcinoma,+1,5	KIT	NM_000222	exon11	c.1694_1720del	p.565_574del	TAAATGGAAACAA		158	8	0.05	126	0	0		7396	5	0	0				
DSPP	1834	bcgsc.ca	37	4	88537036	88537036	+	Silent	SNP	C	C	T	rs367922244		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	DSPP,NS,carcinoma,0,1	DSPP	NM_014208	exon5	c.C3222T	p.D1074D	CAGTGACAGCAGC		84	11	0.13	60	0	0		174	1	0	0				
JMY	133746	mdanderson.org	37	5	78532852	78532852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_152405	exon1	c.C379T	p.R127W	GACCCGCGGCTGC		39	3	0.08	21	0	0				0	0				
SLC12A2	6558	broad.mit.edu	37	5	127420309	127420309	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	SLC12A2	NM_001046	exon1	c.G663T	p.V221V	CGCTGTGCCCAGG		244	10	0.04	158	2	0.0126582278		119		9	0	0.00			
SOGA3	387104	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	127804080	127804080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	C6orf174,right_upper_lobe,carcinoma,0,1	C6orf174	NM_001012279	exon5	c.A1535G	p.K512R	TGAGCCTTTTTTT		120	6	0.05	91	1	0.010989011		0	1	0	0				
TBP	6908	broad.mit.edu;mdanderson.org	37	6	170871034	170871034	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	TBP	NM_003194	exon3	c.G210A	p.Q70Q	GCAGCAGCAGCAA		87	4	0.05	59	1	0.0169491525		58		6	0	0.00			
MALSU1	115416	mdanderson.org	37	7	23349084	23349084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_138446	exon4	c.G627T	p.E209D	ACCTGAGACAGTA		71	4	0.06	40	0	0				200	0	0.00			
EPPK1	83481	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	144940633	144940633	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_031308	exon1	c.G6789A	p.L2263L	CGCCTCCAGCAGC		77	7	0.09	46	0	0				3	0	0.00			
CDKN2A	1029	broad.mit.edu	37	9	21974753	21974753	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	CDKN2A_ENST00000498124,NS,carcinoma,0,3	CDKN2A	NM_058197	exon1	c.T74G	p.V25G	TCCTCTACCCGAC		84	23	0.27	50	6	0.12		4810	3	1	0	0.00			
DNAI1	27019	mdanderson.org	37	9	34483453	34483453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_012144	exon2	c.G56T	p.S19I	GCATCAGCATAGG		47	3	0.06	33	0	0				0	0				
INE1	8552	mdanderson.org	37	X	47065031	47065031	+	RNA	SNP	G	G	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	.	.	.	.	GCCGAGGTCTTTG		46	3	0.07	37	0	0				3	0	0.00			
MAMLD1	10046	broad.mit.edu	37	X	149639635	149639635	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	MAMLD1	NM_005491	exon3	c.A1790T	p.Q597L	AGCTGCAGCAGCA		182	4	0.02	139	1	0.0071942446		263		0	0				
AVPR2	0	broad.mit.edu	37	X	153171699	153171710	+	In_Frame_Del	DEL	CGCCGCAGGGGA	CGCCGCAGGGGA	-	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	CGCCGCAGGGGA	CGCCGCAGGGGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	AVPR2	NM_001146151	exon2	c.739_750del	p.247_250del	GGGGGGCGCCGCA		71	12	0.17	50	0	0		43		0	0				
