Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
ATAD3B	83858	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	1431185	1431185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	ATAD3B	NM_031921	exon16	c.C1935A	p.H645Q	AGGGCACCCCCTG		34	5	0.15	22	0	0		68		438	100	0.23			
PRDM16	63976	mdanderson.org	37	1	3328826	3328826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_022114	exon9	c.G2065T	p.A689S	GGCGCCGCCGGGG		40	3	0.08	41	0	0				0	0				
TARDBP	23435	bcgsc.ca	37	1	11082189	11082189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	TARDBP	NM_007375	exon6	c.G723T	p.Q241H	TGCGCAGTCTCTT		62	4	0.06	92	0	0		31		29	0	0.00			
.	100421113	bcgsc.ca	37	1	17077216	17077216	+	RNA	SNP	G	G	T	rs1759214	bycluster;byfrequency	TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	.	.	.	.	CTGGAGGAGGAGC		52	9	0.17	60	1	0.0166666667				0	0				
WASF2	10163	broad.mit.edu	37	1	27736326	27736328	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	GGA	GGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	WASF2	NM_006990	exon8	c.1197_1199del	p.399_400del	GGCCCCGGAGGAG		164	0	0.00	131	0	0		41		6	0	0.00			
WASF2	10163	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27736390	27736390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	WASF2	NM_006990	exon8	c.C1135T	p.P379S	GTGGTGGCAGAGT		183	25	0.14	127	1	0.0078740157		41		7	1	0.14			
AK2	204	bcgsc.ca	37	1	33476435	33476435	+	Splice_Site	SNP	C	C	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	AK2	NM_013411	exon8	c.695-1G>T	.	ACTAGGCTGAAAT		32	6	0.19	45	0	0		27		5	0	0.00			
SNIP1	79753	broad.mit.edu	37	1	38019751	38019751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	SNIP1	NM_024700	exon1	c.T80G	p.V27G	ACCACCACCCCCG		72	22	0.31	73	14	0.1917808219		44		4	0	0.00			
PTGER3	5733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	71512740	71512740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001126044	exon1	c.C521T	p.T174I	GCGCGGGTGGCAC		59	9	0.15	45	0	0				0	0				
AMY2A	279	broad.mit.edu	37	1	104160107	104160107	+	Silent	SNP	T	T	C	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	AMY2A	NM_000699	exon1	c.T45C	p.A15A	CTGGGCTCAGTAT		668	8	0.01	468	0	0		36		1	0	0.00			
NTNG1	22854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	107866930	107866930	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_014917	exon3	c.G273A	p.E91E	TAATGAGTGTGAT		184	12	0.07	140	0	0				7	0	0.00			
MAB21L3	126868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	116670202	116670202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_152367	exon5	c.G597T	p.K199N	GTCCAAGAAAGCC		186	16	0.09	125	0	0				0	0				
.	0	broad.mit.edu	37	1	121245721	121245721	+	RNA	DEL	A	A	-	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	.	.	.	.	CAAAACAAAAAAA		6	2	0.33	8	0	0				1	0	0.00			
PAQR6	79957	broad.mit.edu;mdanderson.org	37	1	156216033	156216033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	PAQR6	NM_001272104	exon3	c.G60T	p.W20C	ATCTTCCCAGAAC		66	4	0.06	44	0	0		23		7	1	0.14			
.	0	bcgsc.ca	37	1	160905610	160905610	+	RNA	SNP	G	G	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	.	.	.	.	GAGCTGGCACAGC		62	6	0.10	31	0	0				0	0				
DARS2	55157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	173802622	173802622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_018122	exon6	c.C601A	p.L201I	GAATATCTCTGTA		66	7	0.11	56	0	0				0	0				
TOR1AIP1	26092	broad.mit.edu	37	1	179851685	179851685	+	Silent	SNP	T	T	G	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	TOR1AIP1	NM_001267578	exon1	c.T48G	p.G16G	ATGGGGTGTGTAC		46	17	0.37	39	9	0.2307692308		58		2	1	0.50			
OR2L3	391192	hgsc.bcm.edu	37	1	248224864	248224864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	OR2L3,NS,carcinoma,+1,1	OR2L3	NM_001004687	exon1	c.A881G	p.K294R	GGAACAAGGAGGT		66	4	0.06	53	1	0.0188679245		1	1	0	0				
ASCC1	51008	broad.mit.edu	37	10	73956741	73956741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	ASCC1	NM_001198799	exon6	c.C401A	p.T134N	TGGCCAGTGATTA		61	4	0.07	96	1	0.0104166667		18		9	0	0.00			
GRK5	2869	mdanderson.org	37	10	121086116	121086116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_005308	exon2	c.G141T	p.R47S	CCGAAGGACCATA		44	3	0.07	45	0	0				0	0				
RNASEH2C	84153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65487762	65487762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_032193	exon2	c.G299T	p.R100L	GAATCCCGCAAGG		53	9	0.17	67	0	0				181	33	0.18			
TENM4	26011	mdanderson.org	37	11	78614378	78614378	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001098816	exon7	c.C684A	p.G228G	CTGGGCGCCGCCG		34	3	0.09	38	0	0				0	0				
ARHGAP32	9743	mdanderson.org	37	11	128844779	128844779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001142685	exon20	c.C2271A	p.D757E	CTCATTGTCATGA		45	3	0.07	73	0	0				0	0				
KIF5A	3798	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	57965876	57965876	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	KIF5A	NM_004984	exon14	c.G1395A	p.K465K	CGAGAAGGTCCAG		60	5	0.08	61	0	0		143		1	0	0.00			
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63225974	63225974	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_020700	exon2	c.A331T	p.T111S	TTGAGGTCACGGC		131	22	0.17	92	0	0				0	0				
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78591111	78591111	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_014903	exon34	c.G6310C	p.D2104H	ATTCTTGATAATC		76	11	0.14	50	0	0				0	0				
SRSF9	8683	mdanderson.org	37	12	120907259	120907259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_003769	exon1	c.G154A	p.V52M	AGGGCACGAGGCC		48	3	0.06	43	0	0				85	0	0.00			
HSPH1	10808	mdanderson.org	37	13	31727058	31727058	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	HSPH1,NS,carcinoma,0,1	HSPH1	NM_006644	exon5	c.C460A	p.R154R	CAGATCGCCTCTC		50	3	0.06	47	0	0		0	1	5	0	0.00			
ABHD12B	145447	mdanderson.org	37	14	51371075	51371075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001206673	exon13	c.G1080T	p.Q360H	CAAGCAGTGGTCA		43	3	0.07	53	0	0				31	0	0.00			
ACOT6	641372	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	74086215	74086215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	ACOT6	NM_001037162	exon2	c.A296G	p.K99R	TGGAAAAGGCGCA		86	5	0.06	102	0	0		12		0	0				
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96761397	96761397	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_018036	exon36	c.C5326G	p.Q1776E	CATTTTGGGAAGG		152	19	0.13	150	0	0				4	1	0.25			
FAM98B	283742	broad.mit.edu	37	15	38762579	38762579	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	FAM98B	NM_001042429	exon4	c.G504A	p.P168P	CATTCCGCATATG		443	6	0.01	371	0	0		53		9	0	0.00			
INO80	54617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41308347	41308347	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_017553	exon27	c.A3341C	p.K1114T	TGAGACTTGAGCC		58	8	0.14	66	0	0				8	2	0.25			
SLC9A3R2	9351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	2086857	2086857	+	Silent	SNP	C	C	G	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_004785	exon4	c.C723G	p.V241V	TCGGGTCACACCC		96	7	0.07	84	0	0				40	3	0.08			
RNPS1	10921	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2312409	2312409	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	RNPS1	NM_006711	exon6	c.C546A	p.S182S	ATAGGTGGAAAAT		64	14	0.22	58	1	0.0172413793		18		46	15	0.33			
RNPS1	10921	mdanderson.org	37	16	2312754	2312754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_006711	exon5	c.G509A	p.R170Q	ACATTCCGGGTGA		36	3	0.08	53	0	0				53	0	0.00			
CCNF	899	mdanderson.org	37	16	2487271	2487271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001761	exon5	c.G488T	p.C163F	GAAGCTGCTGCAA		28	3	0.11	16	0	0				1	0	0.00			
GTF3C1	2975	mdanderson.org	37	16	27544702	27544702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001520	exon5	c.C759A	p.S253R	GTATTTGCTCCTC		48	3	0.06	51	0	0				2	0	0.00			
APOBR	55911	mdanderson.org	37	16	28509769	28509769	+	Silent	SNP	G	G	A	rs368617607		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	APOBR,NS,carcinoma,+2,1	APOBR	NM_018690	exon4	c.G3237A	p.A1079A	CCTCGCGCACCCT		45	3	0.07	37	0	0		2	1	154	0	0.00			
RNF40	9810	broad.mit.edu	37	16	30783266	30783266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	RNF40	NM_014771	exon18	c.A2699G	p.K900R	GTGAGAAAGAGAG		134	5	0.04	132	0	0		83		31	0	0.00			
.	0	bcgsc.ca	37	16	64294526	64294526	+	RNA	SNP	C	C	G	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	.	.	.	.	GTTCTACCCATGA		82	5	0.06	88	1	0.0113636364				0	0				
ZNF276	92822	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	89789843	89789843	+	Missense_Mutation	SNP	C	C	G	rs200666334	alternate_allele	TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	ZNF276	NM_001113525	exon4	c.C732G	p.T244T	GGATACCAGCTCC		133	11	0.08	114	1	0.0087719298		70		15	2	0.13			
FLJ36000	0	hgsc.bcm.edu	37	17	21904900	21904900	+	RNA	SNP	T	T	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	.	.	.	.	CCTCTCTGGACAA		56	6	0.11	63	0	0				9	0	0.00			
KRT18P55	0	broad.mit.edu	37	17	26633347	26633348	+	RNA	INS	-	-	G	rs35679432	bycluster	TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	.	.	.	.	TGTTGTTTTTTTT		10	7	0.70	12	0	0				0	0				
MLLT6	0	broad.mit.edu	37	17	36861701	36861703	+	RNA	DEL	GAG	GAG	-	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	GAG	GAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	MLLT6	.	.	.	.	GCGAGCGAGGAGG		6	2	0.33	5	0	0		80		0	0				
MRPL45P2	0	broad.mit.edu	37	17	45559947	45559947	+	RNA	DEL	A	A	-	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	.	.	.	.	AAAAATAAAAAAA		6	2	0.33	7	0	0				1	0	0.00			
SKAP1	8631	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	46507464	46507464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	SKAP1	NM_003726	exon1	c.C19T	p.P7S	CCTCAGGGAGGGC		67	6	0.09	76	0	0		41		0	0				
CASKIN2	57513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73509845	73509845	+	Silent	SNP	C	C	G	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_020753	exon2	c.C41C	p.S14S	ACATCTCCATTCT		82	14	0.17	65	0	0				0	0				
NPC1	4864	broad.mit.edu;bcgsc.ca	37	18	21119403	21119403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	NPC1	NM_000271	exon19	c.A2827G	p.I943V	CGTCGATCCAGGA		95	6	0.06	115	1	0.0086956522		114		17	0	0.00			
ZNF271	10778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	32888830	32888830	+	RNA	SNP	T	T	G	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	.	.	.	.	TATTTTTAAATTC		184	24	0.13	165	0	0				32	3	0.09			
SLC39A6	25800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	33696734	33696734	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_012319	exon6	c.G1368A	p.K456K	AGGTTTCTTCTGA		73	13	0.18	50	0	0				1	0	0.00			
VPS4B	9525	broad.mit.edu	37	18	61067303	61067303	+	Silent	SNP	C	C	T	rs146071226		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	VPS4B	NM_004869	exon7	c.G768A	p.T256T	GAACTCCGTCTTA		146	3	0.02	147	0	0		33		1	0	0.00			
CD226	10666	mdanderson.org	37	18	67563188	67563188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_006566	exon4	c.C476A	p.P159H	TGCACAGGCCACG		50	3	0.06	49	0	0				2	0	0.00			
MCOLN1	57192	mdanderson.org	37	19	7594053	7594053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_020533	exon10	c.G1201A	p.V401M	GTGGGCGTGATCC		46	3	0.07	49	0	0				33	0	0.00			
MUC16	94025	mdanderson.org	37	19	9057408	9057408	+	Missense_Mutation	SNP	A	A	T	rs1423051	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_024690	exon3	c.T30038A	p.L10013H	ACAAAGAGAGAGC		66	3	0.05	63	0	0				0	0				
CCDC151	115948	broad.mit.edu;mdanderson.org	37	19	11534699	11534699	+	Splice_Site	SNP	C	C	G	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	CCDC151	NM_145045	exon9	c.964-1G>C	.	GTGGGTCTGCTCG		27	3	0.11	22	0	0		44		0	0				
NFIX	4784	mdanderson.org	37	19	13192670	13192670	+	Splice_Site	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_002501	exon8	c.1254+1G>T	.	GGACAGGTGAGTC		43	3	0.07	39	0	0				0	0				
SPINT2	10653	bcgsc.ca	37	19	38779803	38779807	+	Frame_Shift_Del	DEL	CCACT	CCACT	-	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	CCACT	CCACT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	SPINT2	NM_021102	exon4	c.363_367del	p.121_123del	TGAAGACCACTCC		59	5	0.08	76	0	0		17		135	0	0.00			
GMFG	9535	mdanderson.org	37	19	39819174	39819174	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_004877	exon7	c.C372A	p.R124R	AGTGGTGCGGATT		43	3	0.07	43	0	0				491	0	0.00			
POU2F2	5452	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42599534	42599534	+	Silent	SNP	G	G	A	rs369799078		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	POU2F2	NM_001207025	exon11	c.C1035T	p.F345F	GTTGCAGAACCAG		44	7	0.16	26	0	0		106		3	0	0.00			
ZNF283	284349	mdanderson.org	37	19	44352551	44352551	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_181845	exon7	c.G1798T	p.E600X	TCTTATGAATGTA		81	5	0.06	70	0	0				6	0	0.00			
RPS7	6201	broad.mit.edu;bcgsc.ca	37	2	3627893	3627894	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	GA	GA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	RPS7	.	.	.	.	CACAGTGAGAGTG		68	8	0.12	90	0	0		13		22	0	0.00			
YWHAQ	10971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9727624	9727624	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_006826	exon5	c.C597T	p.A199A	AGCAATGGCCTCA		166	20	0.12	145	0	0				117	14	0.12			
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37235845	37235845	+	Silent	SNP	T	T	C	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_019024	exon28	c.A4431G	p.L1477L	TGTTGGTAGTTCA		81	8	0.10	93	0	0				41	8	0.20			
MTIF2	4528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55479643	55479643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_002453	exon8	c.G811A	p.E271K	TAGATTCTACAGT		171	30	0.18	160	0	0				17	1	0.06			
POTEE	445582	broad.mit.edu	37	2	132021542	132021542	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001083538	exon15	c.C2514T	p.A838A	CCAGGCCGTGCCG		128	5	0.04	113	1	0.0088495575				0	0				
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141093382	141093382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_018557	exon78	c.A11918G	p.D3973G	GCAATGTCCCTGG		117	13	0.11	144	0	0				0	0				
DNAJC10	54431	mdanderson.org	37	2	183583004	183583004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001271581	exon3	c.C191A	p.P64H	TACATCCTGATAA		35	3	0.09	21	0	0				3	0	0.00			
PECR	55825	mdanderson.org	37	2	216930061	216930061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_018441	exon3	c.C398T	p.T133M	GTACCCGTCAGGT		61	4	0.07	73	0	0				1	0	0.00			
CDC25B	994	mdanderson.org	37	20	3785522	3785522	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_021873	exon16	c.G1657T	p.E553X	AAGGATGAGCTAA		41	3	0.07	33	0	0				50	0	0.00			
MIR647	693232	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	20	62573996	62573996	+	RNA	SNP	G	G	C	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	.	.	.	.	CCCCCAGCCCTGC		58	7	0.12	54	0	0				4	0	0.00			
GART	2618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34889725	34889725	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001136005	exon15	c.G1893A	p.V631V	TTTTGCCACGATT		65	5	0.08	73	0	0				26	4	0.15			
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	38468893	38468893	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001001894	exon10	c.C795T	p.Y265Y	AAACTACCTTCTT		168	16	0.10	108	0	0				17	2	0.12			
MYO18B	84700	mdanderson.org	37	22	26173563	26173563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_032608	exon8	c.G1883A	p.R628H	AGGGCCGCCGGGA		36	3	0.08	42	0	0				0	0				
KIAA1656	0	hgsc.bcm.edu	37	22	30766163	30766163	+	RNA	SNP	T	T	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	.	.	.	.	GAAAGTTCTCTCT		14	5	0.36	16	0	0				0	0				
LMF2	91289	mdanderson.org	37	22	50944795	50944795	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_033200	exon4	c.C514A	p.R172R	GCCATCGCACCAG		27	3	0.11	15	0	0				18	0	0.00			
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10417235	10417235	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001001331	exon11	c.G1295C	p.C432S	GGCGTGCACTCAG		120	14	0.12	116	0	0				0	0				
SLITRK3	22865	broad.mit.edu	37	3	164905991	164905991	+	Silent	SNP	T	T	C	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	SLITRK3,NS,carcinoma,-1,1	SLITRK3	NM_014926	exon2	c.A2628G	p.G876G	ACAGCCTCCCCCA		93	4	0.04	70	0	0		263	1	0	0				
FAM157A	728262	hgsc.bcm.edu	37	3	197880169	197880169	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001145248	exon2	c.A248T	p.Q83L	AGCAGCAGCAACT		228	11	0.05	258	0	0				0	0				
HTT	3064	broad.mit.edu	37	4	3076603	3076604	+	In_Frame_Ins	INS	-	-	CAG	rs10618869		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	HTT	NM_002111	exon1	c.51_52insCAG	p.F17delinsFQ	GTCCTTCCAGCAG		8	3	0.38	6	0	0		221		0	0				
LIMCH1	22998	broad.mit.edu	37	4	41615586	41615586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	LIMCH1	NM_014988	exon7	c.G590T	p.G197V	GCCACGGCAGAGA		108	4	0.04	111	0	0		233		0	0				
BEND4	389206	broad.mit.edu;mdanderson.org	37	4	42145560	42145560	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	BEND4	NM_001159547	exon3	c.G939A	p.E313E	CTCCTCCTCTTCT		79	4	0.05	95	0	0		67		3	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55602664	55602664	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	KIT,caecum,carcinoma,0,3	KIT	NM_000222	exon18	c.G2485C	p.A829P	TTACAGGCTCGAC		74	18	0.24	72	0	0		0	3	11	9	0.82			
LARP7	51574	mdanderson.org	37	4	113575239	113575239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001267039	exon14	c.G1613T	p.R538M	AACAAAGGTATTG		85	4	0.05	81	0	0				343	0	0.00			
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138452613	138452613	+	Silent	SNP	T	T	G	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_019035	exon1	c.A630C	p.S210S	GTAGCTTGACTTC		62	6	0.10	69	0	0				0	0				
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183664532	183664532	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001080477	exon18	c.A3589T	p.I1197L	CGGCGGATATTCC		138	29	0.21	113	0	0				1	0	0.00			
CHD1	1105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	98234123	98234123	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001270	exon9	c.A1202T	p.K401M	GCTGACTTTTGAT		56	10	0.18	71	0	0				0	0				
RUFY1	80230	mdanderson.org	37	5	179036460	179036460	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_025158	exon18	c.G2067T	p.V689V	GCCGGTGCGAGTG		35	3	0.09	38	0	0				99	0	0.00			
HIST1H3C	8352	broad.mit.edu	37	6	26045967	26045968	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	HIST1H3C	NM_003531	exon1	c.329_330del	p.110_110del	CCAATCTGTGCGC		63	7	0.11	59	0	0		34		4	0	0.00			
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27419641	27419641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_007149	exon6	c.C1697T	p.T566I	CTGAAGGTTTTCC		65	9	0.14	53	0	0				9	3	0.33			
MICB	4277	ucsc.edu;mdanderson.org	37	6	31474930	31474930	+	Missense_Mutation	SNP	A	A	G	rs201701343		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	MICB	NM_005931	exon4	c.A745G	p.N249D	AGCCACAACACCC		123	18	0.15	119	6	0.0504201681		26		8	2	0.25			
PBX2	5089	broad.mit.edu	37	6	32155509	32155509	+	Missense_Mutation	SNP	T	T	A	rs202223627		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	PBX2,NS,carcinoma,0,4	PBX2	NM_002586	exon5	c.A785T	p.Y262F	TAGAAATACTCAT		86	5	0.06	86	1	0.011627907		29	4	46	0	0.00			
COL11A2	1302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	33139321	33139321	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_080680	exon43	c.C3181A	p.R1061R	CATCTCGGCCAGT		81	6	0.07	81	0	0				0	0				
EZR	7430	mdanderson.org	37	6	159188482	159188482	+	Silent	SNP	T	T	G	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_003379	exon12	c.A1407C	p.A469A	CGGGGGTGCTGTC		48	14	0.29	35	2	0.0571428571				67	3	0.04			
C6orf99	100130967	mdanderson.org	37	6	159316338	159316338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001195032	exon2	c.G71T	p.R24L	ATTACCGTTTCCA		36	4	0.11	41	0	0				1	0	0.00			
IGF2R	3482	broad.mit.edu	37	6	160445736	160445736	+	Splice_Site	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	IGF2R	NM_000876	exon5	c.G646T	p.D216Y	GACATAGGTATGA		63	3	0.05	63	0	0		251		1	0	0.00			
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168276034	168276034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001040000	exon5	c.G598A	p.A200T	CTGGCTGCTGAGG		68	7	0.10	77	0	0				1	0	0.00			
.	0	broad.mit.edu	37	7	65888170	65888170	+	RNA	DEL	A	A	-	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	.	.	.	.	CAGAGCAAAAAAA		5	3	0.60	6	0	0				19	0	0.00			
LRCH4	4034	mdanderson.org	37	7	100179705	100179705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_002319	exon3	c.C451A	p.L151M	GGGGCAGGGCTCC		47	3	0.06	33	0	0				30	0	0.00			
.	0	broad.mit.edu;bcgsc.ca	37	8	30209831	30209831	+	RNA	SNP	A	A	C	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	.	.	.	.	GGGCCAAAGGCCA		131	7	0.05	110	0	0				63	0	0.00			
NRG1	3084	bcgsc.ca	37	8	32617775	32617775	+	Missense_Mutation	SNP	G	G	T	rs373062517		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	NRG1	NM_013956	exon12	c.G1134T	p.M378I	CGTGATGTCATCC		128	6	0.05	102	0	0		260		0	0				
RAB11FIP1	80223	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	37756869	37756869	+	Missense_Mutation	SNP	G	G	A	rs372489374		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	RAB11FIP1	NM_025151	exon1	c.C91T	p.R31W	TGGCCCGCAGGCC		31	4	0.13	43	0	0		105		0	0				
HOOK3	84376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	42798490	42798490	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_032410	exon5	c.C302G	p.P101R	CCCTTCCTGATGT		118	11	0.09	79	0	0				3	0	0.00			
ABCD1	215	mdanderson.org	37	X	153008788	153008788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_000033	exon9	c.G1979A	p.R660Q	CCCACCGGCCCTC		36	3	0.08	28	0	0				43	0	0.00			
LTBP4	8425	mdanderson.org	37	19	41128450	41128450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	.	.	.	.	ACACAGCGGCCCC		47	3	0.06	56	0	0				41	0	0.00			
