Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
EVA1B	55194	mdanderson.org	37	1	36788207	36788207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_018166	exon3	c.G187A	p.A63T	GCTGAGCCGGGCC		18	2	0.11	15	0	0				28	0	0.00			
EPS8L3	79574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110300454	110300454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_139053	exon10	c.C867A	p.F289L	CTTCTGGAAGCAG		164	27	0.16	124	0	0				0	0				
PRG4	10216	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	186276725	186276725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	PRG4	NM_005807	exon7	c.C1874T	p.T625M	AGCTCACGCCCAC		58	7	0.12	40	0	0		259		0	0				
ANXA11	311	mdanderson.org	37	10	81921708	81921708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_145868	exon12	c.G1163A	p.R388Q	TGGGCCCGGCTCC		23	3	0.13	27	0	0				37	1	0.03			
MAT1A	4143	mdanderson.org	37	10	82036264	82036264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	MAT1A,NS,carcinoma,0,1	MAT1A	NM_000429	exon6	c.C636A	p.D212E	CGTGATGTCTTCG		40	3	0.08	50	0	0		0	1	0	0				
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134663865	134663865	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001200049	exon41	c.C5835T	p.S1945S	GCCCACGCTCAGC		101	12	0.12	116	0	0				0	0				
KNDC1	85442	mdanderson.org	37	10	135012548	135012548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_152643	exon14	c.G2536T	p.G846C	CCAGAGGGCCCCG		33	3	0.09	20	0	0				0	0				
NRXN2	9379	mdanderson.org	37	11	64374979	64374979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_015080	exon23	c.C4828T	p.P1610S	CTGTGGGCAGATG		16	3	0.19	22	0	0				23	0	0.00			
ARL2	402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64786160	64786160	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	ARL2,NS,carcinoma,+1,1	ARL2	NM_001667	exon3	c.C294T	p.R98R	CCAGCGCATGCAG		43	7	0.16	53	0	0		1	1	89	38	0.43			
CHRDL2	25884	ucsc.edu	37	11	74424504	74424504	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	CHRDL2	NM_015424	exon3	c.C216A	p.Y72X	GAGGCGGTAACAA		38	4	0.11	61	0	0		47		0	0				
ACER3	55331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76726118	76726118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_018367	exon8	c.T556C	p.F186L	TTGGGATTTTTAT		38	7	0.18	51	0	0				1	0	0.00			
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88338026	88338026	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_000842	exon5	c.C1254T	p.L418L	TGGGCAGAGGGAC		110	18	0.16	110	0	0				0	0				
MAML2	84441	broad.mit.edu;mdanderson.org	37	11	95825263	95825263	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	MAML2	NM_032427	exon2	c.G1932A	p.Q644Q	TTGTTGCTGCTGC		47	3	0.06	55	1	0.0181818182		94		1	0	0.00			
PLXNC1	10154	bcgsc.ca;mdanderson.org	37	12	94637739	94637739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	PLXNC1	NM_005761	exon12	c.G2326T	p.G776C	ATGATGGGCAGAA		98	5	0.05	72	0	0		135		0	0				
OXA1L	5018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	23239418	23239418	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_005015	exon5	c.G780A	p.S260S	TTCCTCGGAGATG		117	9	0.08	98	0	0				41	6	0.15			
TRMT61A	115708	broad.mit.edu	37	14	104001019	104001019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	TRMT61A	NM_152307	exon4	c.G731T	p.S244I	CTGTCAGCCTGCC		47	6	0.13	40	1	0.025		15		24	0	0.00			
FBN1	2200	broad.mit.edu	37	15	48703418	48703418	+	Silent	SNP	G	G	T	rs138574576	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	FBN1	NM_000138	exon66	c.C8385A	p.I2795I	AGATTCGATCAAG		124	5	0.04	111	0	0		310		2	0	0.00			
WDR90	197335	mdanderson.org	37	16	717551	717551	+	Missense_Mutation	SNP	C	C	T	rs370037118		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	WDR90,NS,carcinoma,0,1	WDR90	NM_145294	exon41	c.C5209T	p.R1737C	GCCGCCCGCAACG		30	3	0.10	33	0	0		0	1	144	0	0.00			
UNKL	64718	mdanderson.org	37	16	1417324	1417324	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001193388	exon14	c.G1815A	p.A605A	CTCCTGCGCCTCT		20	2	0.10	22	0	0				5	0	0.00			
KLHL36	79786	mdanderson.org	37	16	84690889	84690889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_024731	exon3	c.G476T	p.S159I	TCTACAGCCTCAA		38	3	0.08	61	0	0				1	0	0.00			
TP53	7157	broad.mit.edu	37	17	7574024	7574024	+	Missense_Mutation	SNP	G	G	T	rs375444154	alternate_allele	TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	TP53_ENST00000269305,colon,carcinoma,+2,3	TP53	NM_000546	exon10	c.C1003A	p.R335S	GCTCACGCCCACG		102	3	0.03	126	1	0.0079365079		33396	3	0	0				
WNK4	65266	mdanderson.org	37	17	40936077	40936077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_032387	exon3	c.G914T	p.C305F	TCAAGTGCGACAA		36	3	0.08	34	0	0				3	0	0.00			
LRRC37A4P	0	broad.mit.edu	37	17	43587323	43587326	+	RNA	DEL	GTAA	GTAA	-	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	GTAA	GTAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	.	.	.	.	ATTAGGGTAAGTA		6	2	0.33	14	0	0				1	0	0.00			
RGS9	8787	mdanderson.org	37	17	63186321	63186321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_003835	exon11	c.G713T	p.R238M	TGATGAGGTCCAC		49	3	0.06	42	0	0				0	0				
BPTF	2186	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65890179	65890179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	BPTF_ENST00000335221,NS,carcinoma,0,2	BPTF	NM_004459	exon9	c.G2819T	p.C940F	AGATGTGTAGCAA		52	5	0.10	65	0	0		415	2	2	0	0.00			
FSCN2	25794	mdanderson.org	37	17	79496002	79496002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_012418	exon1	c.C445T	p.R149W	AGCCGGCGGCGCT		17	2	0.12	18	0	0				0	0				
MKNK2	2872	mdanderson.org	37	19	2039711	2039711	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_199054	exon14	c.C1299A	p.C433X	CTGCAGGCAGCGT		34	3	0.09	36	0	0				9	0	0.00			
NFIC	4782	broad.mit.edu	37	19	3453852	3453852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	NFIC	NM_001245002	exon9	c.T1361C	p.L454P	TGGCGCTCCCCCC		116	22	0.19	83	9	0.1084337349		36		0	0				
HSH2D	84941	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	16263920	16263920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_032855	exon6	c.G283A	p.E95K	CCCGGGGAGAAGG		74	15	0.20	47	0	0				6	0	0.00			
DHDH	27294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49442835	49442835	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_014475	exon4	c.G496C	p.D166H	GCCGTAGACCGGG		87	13	0.15	79	0	0				0	0				
TTYH1	57348	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	54942000	54942000	+	Missense_Mutation	SNP	C	C	T	rs199946983	by1000genomes	TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	TTYH1	NM_020659	exon9	c.C949T	p.L317L	CTGACTCTGTCCC		64	5	0.08	69	0	0		78		29	3	0.10			
VWA3B	200403	mdanderson.org	37	2	98810929	98810929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_144992	exon12	c.G1711T	p.A571S	GAACAGGCTCAGT		47	3	0.06	72	0	0				0	0				
IL18RAP	8807	broad.mit.edu	37	2	103067331	103067331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	IL18RAP	NM_003853	exon11	c.G1234A	p.V412I	GCTTTCGTATCCT		72	3	0.04	69	0	0		102		4	0	0.00			
ANKRD30BL	554226	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	132919171	132919171	+	Silent	SNP	A	A	G	rs199695856	bycluster	TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	ANKRD30BL	.	.	.	.	ATCCCCATGGTGA		138	12	0.09	119	0	0		36		0	0				
ANKRD30BL	554226	broad.mit.edu;mdanderson.org	37	2	132919192	132919192	+	Silent	SNP	G	G	A	rs111295191	bycluster	TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	ANKRD30BL	.	.	.	.	AGAGTCGTTGTTG		136	8	0.06	130	0	0		36		0	0				
SPAG16	79582	mdanderson.org	37	2	214149325	214149325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_024532	exon1	c.G118A	p.G40S	GCTGAGGGCGCCT		41	3	0.07	42	0	0				1	0	0.00			
GPC1	2817	mdanderson.org	37	2	241404986	241404986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_002081	exon8	c.G1365T	p.Q455H	CCGGCAGCAGATC		73	4	0.05	81	0	0				41	0	0.00			
SIRPG	55423	mdanderson.org	37	20	1610930	1610930	+	Silent	SNP	C	C	T	rs114055242	bycluster;by1000genomes	TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_018556	exon5	c.G1104A	p.A368A	GAGCAGCGCAGTA		52	3	0.06	49	0	0	0.001			58	0	0.00			
RBBP8NL	140893	mdanderson.org	37	20	60989122	60989122	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_080833	exon10	c.G1285T	p.E429X	CAGCCTCTGTCCT		34	3	0.09	49	0	0				0	0				
BAGE	85319	broad.mit.edu	37	21	11058613	11058614	+	RNA	INS	-	-	A	rs377480117	bycluster	TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	.	.	.	.	TTTTTTTAAAGCA		9	3	0.33	7	0	0				0	0				
MED15	51586	bcgsc.ca	37	22	20918767	20918767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	MED15	NM_015889	exon6	c.A482T	p.Q161L	CGCTGCAGCAGCA		140	5	0.04	114	0	0		68		49	0	0.00			
ADORA2A	135	mdanderson.org	37	22	24829692	24829692	+	Missense_Mutation	SNP	G	G	A	rs202185195		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_000675	exon2	c.G320A	p.R107H	CCATCCGCATCCC		27	3	0.11	28	0	0				2	0	0.00			
EMID1	129080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29654850	29654850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_133455	exon15	c.C1249A	p.P417T	GGCACCCCCAGCC		81	9	0.11	58	0	0				1	0	0.00			
FAM227A	646851	broad.mit.edu	37	22	39019280	39019280	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001013647	exon10	c.C855A	p.T285T	AGGATAGGTGCCT		84	3	0.04	87	0	0				0	0				
CELSR1	9620	broad.mit.edu;mdanderson.org	37	22	46931534	46931534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	CELSR1	NM_014246	exon1	c.C1534A	p.L512M	CGCTCAGCGAGTG		52	4	0.08	51	0	0		242		1	0	0.00			
CLASP2	23122	mdanderson.org	37	3	33543150	33543150	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_015097	exon38	c.C4455A	p.G1485G	TTTACTGCCAGTA		35	3	0.09	57	0	0				16	0	0.00			
KIF9-AS1	285352	hgsc.bcm.edu	37	3	47276935	47276935	+	RNA	SNP	G	G	C	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	.	.	.	.	AGTAGGGAATATG		42	7	0.17	61	0	0				0	0				
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49146542	49146542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001199160	exon27	c.G4109A	p.G1370E	TGGGGCCCCCAGG		142	22	0.15	187	0	0				4	3	0.75			
ARHGEF3	50650	mdanderson.org	37	3	56789110	56789110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	ARHGEF3_ENST00000338458,colon,carcinoma,0,3	ARHGEF3_ENST00000338458	NM_001128615	exon6	c.G370A	p.A124T	AGGGGGCGGCATT		34	4	0.12	35	0	0		0	3	0	0				
DENND6A	201627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57631406	57631406	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_152678	exon11	c.C1019G	p.T340S	CGGGTAGTATATT		55	12	0.22	44	0	0				1	0	0.00			
.	0	broad.mit.edu	37	3	63082863	63082863	+	RNA	DEL	A	A	-	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	.	.	.	.	AGCTCTACCTTGT		7	2	0.29	12	0	0				0	0				
GABRG2	2566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161528257	161528257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_198904	exon5	c.G565A	p.E189K	GATGCTGAGTGCC		52	8	0.15	74	0	0				0	0				
FAM83B	222584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	54806767	54806767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001010872	exon5	c.A2998G	p.M1000V	GGATTTATGCAAA		137	21	0.15	127	0	0				0	0				
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	107389963	107389963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001080450	exon5	c.G2432A	p.R811H	TTGGGGCGGCGGC		73	13	0.18	69	0	0				74	21	0.28			
HGC6.3	0	mdanderson.org	37	6	168376840	168376840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001129895	exon1	c.A493G	p.T165A	TGTGTGTGGGGAG		165	13	0.08	173	2	0.0115606936				38	1	0.03			
IQCE	23288	bcgsc.ca	37	7	2627479	2627479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	IQCE	NM_152558	exon13	c.C1012T	p.R338W	AAGCCCCGGCTGC		72	4	0.06	54	0	0		66		3	0	0.00			
ADAM22	53616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	87780609	87780609	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_021722	exon20	c.G1655C	p.R552T	GAGATAGACAATG		110	7	0.06	110	0	0				0	0				
SLC18A1	6570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	20005148	20005148	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_003053	exon14	c.C1296T	p.I432I	ATCAGCGATGGCG		172	12	0.07	133	0	0				0	0				
GDAP1	54332	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75272458	75272458	+	Missense_Mutation	SNP	A	A	T	rs368695731	alternate_allele	TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_018972	exon3	c.A397T	p.M133L	TTGCCAATGGATG		79	8	0.10	86	0	0				0	0				
tRNA-Val	0	broad.mit.edu	37	MT	1606	1606	+	RNA	SNP	G	G	A	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	.	.	.	.	ACCAGAGTGTAGC		16	4	0.25	9	0	0				0	0				
ND4	0	hgsc.bcm.edu;broad.mit.edu	37	MT	11324	11324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	ENST00000361381	exon1	c.T565C	p.S189P	TCAAACTCCTGAG		29	12	0.41	11	0	0				0	0				
CYTB	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	15831	15831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	ENST00000361789	exon1	c.T1085C	p.I362T	CAACAATCCTAAT		14	12	0.86	13	0	0				0	0				
EIF2S3	1968	mdanderson.org	37	X	24078274	24078274	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001415	exon5	c.G453T	p.V151V	AGCAGTGATGGAT		48	4	0.08	58	0	0				4	0	0.00			
BCAP31	10134	mdanderson.org	37	X	152981136	152981136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001139457	exon4	c.C403A	p.R135S	TTTCGCGCACGGC		44	3	0.07	47	0	0				74	0	0.00			
BAHCC1	57597	mdanderson.org	37	17	79422408	79422408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	.	.	.	.	CAGACTGCCTCCG		32	3	0.09	29	0	0				0	0				
