#version 2.4
## 
## Oncotator v1.8.0.0 | Flat File Reference hg19 | GENCODE v19 EFFECT | UniProt_AAxform 2014_12 | ClinVar 12.03.20 | ESP 6500SI-V2 | ORegAnno UCSC Track | dbSNP build 142 | CCLE_By_GP 09292010 | COSMIC v62_291112 | 1000gp3 20130502 | UniProt_AA 2014_12 | dbNSFP v2.4 | ESP 6500SI-V2 | COSMIC_FusionGenes v62_291112 | gencode_xref_refseq metadata_v19 | CCLE_By_Gene 09292010 | ACHILLES_Lineage_Results 110303 | CGC full_2012-03-15 | UniProt 2014_12 | HumanDNARepairGenes 20110905 | HGNC Sept172014 | COSMIC_Tissue 291112 | Familial_Cancer_Genes 20110905 | TUMORScape 20100104 | Ensembl ICGC MUCOPA | TCGAScape 110405 | MutSig Published Results 20110905 
Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	i_1000gp3_AA	i_1000gp3_AC	i_1000gp3_AF	i_1000gp3_AFR_AF	i_1000gp3_AMR_AF	i_1000gp3_AN	i_1000gp3_CIEND	i_1000gp3_CIPOS	i_1000gp3_CS	i_1000gp3_DP	i_1000gp3_EAS_AF	i_1000gp3_END	i_1000gp3_EUR_AF	i_1000gp3_IMPRECISE	i_1000gp3_MC	i_1000gp3_MEINFO	i_1000gp3_MEND	i_1000gp3_MLEN	i_1000gp3_MSTART	i_1000gp3_NS	i_1000gp3_SAS_AF	i_1000gp3_SVLEN	i_1000gp3_SVTYPE	i_1000gp3_TSD	i_ACHILLES_Lineage_Results_Top_Genes	i_Annotation_Transcript	i_CCLE_ONCOMAP_overlapping_mutations	i_CCLE_ONCOMAP_total_mutations_in_gene	i_CGC_Cancer Germline Mut	i_CGC_Cancer Molecular Genetics	i_CGC_Cancer Somatic Mut	i_CGC_Cancer Syndrome	i_CGC_Chr	i_CGC_Chr Band	i_CGC_GeneID	i_CGC_Mutation_Type	i_CGC_Name	i_CGC_Other Germline Mut	i_CGC_Other_Diseases	i_CGC_Tissue Type	i_CGC_Translocation_Partner	i_CGC_Tumor_Types_Germline	i_CGC_Tumor_Types_Somatic	i_COSMIC_fusion_genes	i_COSMIC_n_overlapping_mutations	i_COSMIC_overlapping_mutation_descriptions	i_COSMIC_overlapping_mutations	i_COSMIC_overlapping_primary_sites	i_COSMIC_tissue_types_affected	i_COSMIC_total_alterations_in_gene	i_ClinVar_ASSEMBLY	i_ClinVar_HGMD_ID	i_ClinVar_SYM	i_ClinVar_TYPE	i_ClinVar_rs	i_Codon_Change	i_DNARepairGenes_Role	i_Description	i_DrugBank	i_ESP_AA	i_ESP_AAC	i_ESP_AA_AC	i_ESP_AA_AGE	i_ESP_AA_GTC	i_ESP_AvgAAsampleReadDepth	i_ESP_AvgEAsampleReadDepth	i_ESP_AvgSampleReadDepth	i_ESP_CA	i_ESP_CDP	i_ESP_CG	i_ESP_CP	i_ESP_Chromosome	i_ESP_DBSNP	i_ESP_DP	i_ESP_EA_AC	i_ESP_EA_AGE	i_ESP_EA_GTC	i_ESP_EXOME_CHIP	i_ESP_FG	i_ESP_GL	i_ESP_GM	i_ESP_GS	i_ESP_GTC	i_ESP_GTS	i_ESP_GWAS_PUBMED	i_ESP_MAF	i_ESP_PH	i_ESP_PP	i_ESP_Position	i_ESP_TAC	i_ESP_TotalAAsamplesCovered	i_ESP_TotalEAsamplesCovered	i_ESP_TotalSamplesCovered	i_Ensembl_so_accession	i_Ensembl_so_term	i_Entrez_Gene_Id	i_FamilialCancerDatabase_Syndromes	i_Familial_Cancer_Genes_Reference	i_Familial_Cancer_Genes_Synonym	i_GO_Biological_Process	i_GO_Cellular_Component	i_GO_Molecular_Function	i_Genome_Change	i_HGNC_Accession Numbers	i_HGNC_CCDS IDs	i_HGNC_Chromosome	i_HGNC_Date Modified	i_HGNC_Date Name Changed	i_HGNC_Date Symbol Changed	i_HGNC_Ensembl Gene ID	i_HGNC_Ensembl ID(supplied by Ensembl)	i_HGNC_Enzyme IDs	i_HGNC_Gene family description	i_HGNC_HGNC ID	i_HGNC_Locus Group	i_HGNC_Locus Type	i_HGNC_Name Synonyms	i_HGNC_OMIM ID(supplied by NCBI)	i_HGNC_Previous Names	i_HGNC_Previous Symbols	i_HGNC_Primary IDs	i_HGNC_Pubmed IDs	i_HGNC_Record Type	i_HGNC_RefSeq(supplied by NCBI)	i_HGNC_Secondary IDs	i_HGNC_Status	i_HGNC_Synonyms	i_HGNC_UCSC ID(supplied by UCSC)	i_HGNC_UniProt ID(supplied by UniProt)	i_HGNC_VEGA IDs	i_HGVS_coding_DNA_change	i_HGVS_genomic_change	i_HGVS_protein_change	i_MUTSIG_Published_Results	i_Mutation_Status	i_OREGANNO_ID	i_OREGANNO_Values	i_ORegAnno_bin	i_Other_Transcripts	i_Protein_Change	i_Refseq_mRNA_Id	i_Refseq_prot_Id	i_Sequence_Source	i_Sequencer	i_Sequencing_Phase	i_SwissProt_acc_Id	i_SwissProt_entry_Id	i_TCGAscape_Amplification_Peaks	i_TCGAscape_Deletion_Peaks	i_Transcript_Exon	i_Transcript_Position	i_Transcript_Strand	i_Tumorscape_Amplification_Peaks	i_Tumorscape_Deletion_Peaks	i_UniProt_AApos	i_UniProt_Experimental_Info	i_UniProt_Natural_Variations	i_UniProt_Region	i_UniProt_Site	i_UniProt_alt_uniprot_accessions	i_Variant_Classification	i_Variant_Type	i_annotation_transcript	i_build	i_cDNA_Change	i_ccds_id	i_dbNSFP_1000Gp1_AC	i_dbNSFP_1000Gp1_AF	i_dbNSFP_1000Gp1_AFR_AC	i_dbNSFP_1000Gp1_AFR_AF	i_dbNSFP_1000Gp1_AMR_AC	i_dbNSFP_1000Gp1_AMR_AF	i_dbNSFP_1000Gp1_ASN_AC	i_dbNSFP_1000Gp1_ASN_AF	i_dbNSFP_1000Gp1_EUR_AC	i_dbNSFP_1000Gp1_EUR_AF	i_dbNSFP_Ancestral_allele	i_dbNSFP_CADD_phred	i_dbNSFP_CADD_raw	i_dbNSFP_CADD_raw_rankscore	i_dbNSFP_ESP6500_AA_AF	i_dbNSFP_ESP6500_EA_AF	i_dbNSFP_Ensembl_geneid	i_dbNSFP_Ensembl_transcriptid	i_dbNSFP_FATHMM_pred	i_dbNSFP_FATHMM_rankscore	i_dbNSFP_FATHMM_score	i_dbNSFP_GERP++_NR	i_dbNSFP_GERP++_RS	i_dbNSFP_GERP++_RS_rankscore	i_dbNSFP_Interpro_domain	i_dbNSFP_LRT_Omega	i_dbNSFP_LRT_converted_rankscore	i_dbNSFP_LRT_pred	i_dbNSFP_LRT_score	i_dbNSFP_LR_pred	i_dbNSFP_LR_rankscore	i_dbNSFP_LR_score	i_dbNSFP_MutationAssessor_pred	i_dbNSFP_MutationAssessor_rankscore	i_dbNSFP_MutationAssessor_score	i_dbNSFP_MutationTaster_converted_rankscore	i_dbNSFP_MutationTaster_pred	i_dbNSFP_MutationTaster_score	i_dbNSFP_Polyphen2_HDIV_pred	i_dbNSFP_Polyphen2_HDIV_rankscore	i_dbNSFP_Polyphen2_HDIV_score	i_dbNSFP_Polyphen2_HVAR_pred	i_dbNSFP_Polyphen2_HVAR_rankscore	i_dbNSFP_Polyphen2_HVAR_score	i_dbNSFP_RadialSVM_pred	i_dbNSFP_RadialSVM_rankscore	i_dbNSFP_RadialSVM_score	i_dbNSFP_Reliability_index	i_dbNSFP_SIFT_converted_rankscore	i_dbNSFP_SIFT_pred	i_dbNSFP_SIFT_score	i_dbNSFP_SLR_test_statistic	i_dbNSFP_SiPhy_29way_logOdds	i_dbNSFP_SiPhy_29way_logOdds_rankscore	i_dbNSFP_SiPhy_29way_pi	i_dbNSFP_UniSNP_ids	i_dbNSFP_Uniprot_aapos	i_dbNSFP_Uniprot_acc	i_dbNSFP_Uniprot_id	i_dbNSFP_aaalt	i_dbNSFP_aapos	i_dbNSFP_aapos_FATHMM	i_dbNSFP_aapos_SIFT	i_dbNSFP_aaref	i_dbNSFP_cds_strand	i_dbNSFP_codonpos	i_dbNSFP_fold-degenerate	i_dbNSFP_genename	i_dbNSFP_hg18_pos(1-coor)	i_dbNSFP_phastCons100way_vertebrate	i_dbNSFP_phastCons100way_vertebrate_rankscore	i_dbNSFP_phastCons46way_placental	i_dbNSFP_phastCons46way_placental_rankscore	i_dbNSFP_phastCons46way_primate	i_dbNSFP_phastCons46way_primate_rankscore	i_dbNSFP_phyloP100way_vertebrate	i_dbNSFP_phyloP100way_vertebrate_rankscore	i_dbNSFP_phyloP46way_placental	i_dbNSFP_phyloP46way_placental_rankscore	i_dbNSFP_phyloP46way_primate	i_dbNSFP_phyloP46way_primate_rankscore	i_dbNSFP_refcodon	i_entrez_gene_id	i_gc_content_full	i_gencode_transcript_name	i_gencode_transcript_status	i_gencode_transcript_tags	i_gencode_transcript_type	i_gene_type	i_havana_transcript	i_refseq_mrna_id	i_secondary_variant_classification	i_t_alt_count_full	i_t_ref_count_full	isArtifactMode	oxoGCut	pox	pox_cutoff	qox	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample
FAT1	2195	broad.mit.edu	37	4	187538910	187538910	+	Missense_Mutation	SNP	C	C	T			TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr4:187538910C>T	ENST00000441802.2	-	10	9039	c.8830G>A	c.(8830-8832)Gat>Aat	p.D2944N		NM_005245.3	NP_005236.2	Q14517	FAT1_HUMAN	FAT atypical cadherin 1	2944	Cadherin 27. {ECO:0000255|PROSITE- ProRule:PRU00043}.				actin filament organization (GO:0007015)|anatomical structure morphogenesis (GO:0009653)|cell adhesion (GO:0007155)|cell migration (GO:0016477)|cell-cell signaling (GO:0007267)|establishment or maintenance of cell polarity (GO:0007163)|homophilic cell adhesion (GO:0007156)|single organismal cell-cell adhesion (GO:0016337)	cell-cell junction (GO:0005911)|extracellular vesicular exosome (GO:0070062)|filopodium (GO:0030175)|focal adhesion (GO:0005925)|integral component of plasma membrane (GO:0005887)|lamellipodium (GO:0030027)|nucleus (GO:0005634)|perinuclear region of cytoplasm (GO:0048471)|plasma membrane (GO:0005886)	calcium ion binding (GO:0005509)			NS(1)|breast(3)|central_nervous_system(3)|endometrium(38)|haematopoietic_and_lymphoid_tissue(2)|kidney(12)|large_intestine(33)|lung(88)|ovary(13)|pancreas(2)|prostate(16)|skin(2)|upper_aerodigestive_tract(11)|urinary_tract(4)	228						GAATCAGCATCCGTGGTACTT	0.388										HNSCC(5;0.00058)																											Colon(197;1040 2055 4143 4984 49344)	ENST00000441802.2																			0				NS(1)|breast(3)|central_nervous_system(3)|endometrium(38)|haematopoietic_and_lymphoid_tissue(2)|kidney(12)|large_intestine(33)|lung(88)|ovary(13)|pancreas(2)|prostate(16)|skin(2)|upper_aerodigestive_tract(11)|urinary_tract(4)	228						c.(8830-8832)Gat>Aat		FAT atypical cadherin 1							108.0	106.0	107.0					4																	187538910		1896	4100	5996	SO:0001583	missense	2195				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding	g.chr4:187538910C>T	X87241	CCDS47177.1	4q35.2	2013-05-31	2013-05-31	2008-10-30	ENSG00000083857	ENSG00000083857		"""Cadherins / Cadherin-related"""	3595	protein-coding gene	gene with protein product	"""cadherin-related family member 8"""	600976	"""FAT tumor suppressor (Drosophila) homolog"", ""FAT tumor suppressor homolog 1 (Drosophila)"""	FAT		8586420	Standard	XM_005262834		Approved	CDHF7, CDHR8	uc003izf.3	Q14517	OTTHUMG00000160320	ENST00000441802.2:c.8830G>A	4.37:g.187538910C>T	ENSP00000406229:p.Asp2944Asn	HNSCC(5;0.00058)	Somatic					p.D2944N	NM_005245.3	NP_005236.2	WXS	Illumina GAIIx	Phase_I	Q14517	FAT1_HUMAN			10	9039	-			2944			Cadherin 27.			Missense_Mutation	SNP	ENST00000441802.2	37	c.8830G>A	CCDS47177.1	.	.	.	.	.	.	.	.	.	.	C	19.16	3.773144	0.69992	.	.	ENSG00000083857	ENST00000441802;ENST00000260147	T	0.78003	-1.14	4.89	4.89	0.63831	Cadherin (4);Cadherin-like (1);	0.000000	0.85682	D	0.000000	D	0.92172	0.7518	H	0.99555	4.625	0.80722	D	1	P	0.48350	0.909	P	0.54060	0.741	D	0.95385	0.8476	10	0.87932	D	0	.	18.6013	0.91248	0.0:1.0:0.0:0.0	.	2944	Q14517	FAT1_HUMAN	N	2944;2946	ENSP00000406229:D2944N	ENSP00000260147:D2946N	D	-	1	0	FAT1	187775904	1.000000	0.71417	0.387000	0.26183	0.007000	0.05969	7.574000	0.82434	2.698000	0.92095	0.650000	0.86243	GAT		0.388	FAT1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000360209.3	NM_005245		31	39	0	0	0	1	0	31	39				
KTN1	3895	broad.mit.edu	37	14	56094706	56094706	+	Missense_Mutation	SNP	A	A	G			TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr14:56094706A>G	ENST00000395314.3	+	6	1108	c.1040A>G	c.(1039-1041)gAt>gGt	p.D347G	KTN1_ENST00000416613.1_Missense_Mutation_p.D347G|KTN1_ENST00000413890.2_Missense_Mutation_p.D347G|KTN1_ENST00000395309.3_Missense_Mutation_p.D347G|KTN1_ENST00000438792.2_Missense_Mutation_p.D347G|KTN1_ENST00000395308.1_Missense_Mutation_p.D347G|KTN1_ENST00000395311.1_Missense_Mutation_p.D347G	NM_001079521.1	NP_001072989.1	Q86UP2	KTN1_HUMAN	kinectin 1 (kinesin receptor)	347					microtubule-based movement (GO:0007018)	endoplasmic reticulum (GO:0005783)|endoplasmic reticulum membrane (GO:0005789)|integral component of membrane (GO:0016021)|integral component of plasma membrane (GO:0005887)|membrane (GO:0016020)	poly(A) RNA binding (GO:0044822)			breast(4)|central_nervous_system(1)|large_intestine(8)|lung(1)|ovary(3)|skin(1)|upper_aerodigestive_tract(1)	19						GTGAAGGAAGATGCTGCTGCT	0.413			T	RET	papillary thryoid																																	ENST00000416613.1				Dom	yes		14	14q22.1	3895	T	kinectin 1 (kinesin receptor)			E	RET		papillary thryoid		0				breast(4)|central_nervous_system(1)|large_intestine(8)|lung(1)|ovary(3)|skin(1)|upper_aerodigestive_tract(1)	19						c.(1039-1041)gAt>gGt		kinectin 1 (kinesin receptor)							119.0	101.0	107.0					14																	56094706		2203	4300	6503	SO:0001583	missense	0				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction		g.chr14:56094706A>G		CCDS41957.1, CCDS41958.1, CCDS41959.1	14q22.1	2008-05-02			ENSG00000126777	ENSG00000126777			6467	protein-coding gene	gene with protein product		600381				9605849	Standard	NM_001079521		Approved	KIAA0004, CG1	uc001xcc.3	Q86UP2	OTTHUMG00000140312	ENST00000395314.3:c.1040A>G	14.37:g.56094706A>G	ENSP00000378725:p.Asp347Gly		Somatic				KTN1_ENST00000395309.3_Missense_Mutation_p.D347G|KTN1_ENST00000438792.2_Missense_Mutation_p.D347G|KTN1_ENST00000413890.2_Missense_Mutation_p.D347G|KTN1_ENST00000395314.3_Missense_Mutation_p.D347G|KTN1_ENST00000395308.1_Missense_Mutation_p.D347G|KTN1_ENST00000395311.1_Missense_Mutation_p.D347G	p.D347G			WXS	Illumina GAIIx	Phase_I	Q86UP2	KTN1_HUMAN			5	1112	+			347					B4DZ88|Q13999|Q14707|Q15387|Q17RZ5|Q5GGW3|Q86W57	Missense_Mutation	SNP	ENST00000395314.3	37	c.1040A>G	CCDS41957.1	.	.	.	.	.	.	.	.	.	.	A	27.5	4.839734	0.91117	.	.	ENSG00000126777	ENST00000413890;ENST00000395309;ENST00000438792;ENST00000395314;ENST00000395308;ENST00000395311;ENST00000416613	T;T;T;T;T;T;T	0.52754	0.65;0.65;0.65;0.65;0.65;0.65;0.65	5.8	5.8	0.92144	.	0.104646	0.42053	D	0.000780	T	0.66567	0.2802	M	0.62723	1.935	0.40129	D	0.97669	D;D;P;D	0.76494	0.975;0.999;0.923;0.975	P;D;P;P	0.87578	0.775;0.998;0.753;0.775	T	0.68648	-0.5353	10	0.52906	T	0.07	-14.6423	15.8076	0.78527	1.0:0.0:0.0:0.0	.	347;347;347;347	B4DZ88;Q86UP2-2;Q17RZ5;Q86UP2	.;.;.;KTN1_HUMAN	G	347	ENSP00000394992:D347G;ENSP00000378720:D347G;ENSP00000391964:D347G;ENSP00000378725:D347G;ENSP00000378719:D347G;ENSP00000378722:D347G;ENSP00000388807:D347G	ENSP00000378719:D347G	D	+	2	0	KTN1	55164459	1.000000	0.71417	1.000000	0.80357	0.937000	0.57800	6.714000	0.74692	2.219000	0.72066	0.533000	0.62120	GAT		0.413	KTN1-002	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000276912.2			18	18	0	0	0	1	0	18	18				
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A	rs12366766	byFrequency	TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr12:132547087G>A	ENST00000333577.4	+	48	8392	c.8283G>A	c.(8281-8283)caG>caA	p.Q2761Q	EP400_ENST00000332482.4_Silent_p.Q2688Q|EP400_ENST00000389562.2_Silent_p.Q2724Q|EP400_ENST00000389561.2_Silent_p.Q2725Q|EP400_ENST00000330386.6_Silent_p.Q2644Q			Q96L91	EP400_HUMAN	E1A binding protein p400	2761	Interaction with ZNF42. {ECO:0000250}.|Poly-Gln.				chromatin organization (GO:0006325)|histone H2A acetylation (GO:0043968)|histone H4 acetylation (GO:0043967)	NuA4 histone acetyltransferase complex (GO:0035267)|nuclear speck (GO:0016607)|nucleoplasm (GO:0005654)|Swr1 complex (GO:0000812)	ATP binding (GO:0005524)|chromatin binding (GO:0003682)|DNA binding (GO:0003677)|helicase activity (GO:0004386)	p.Q2724Q(16)|p.Q2725Q(1)		NS(1)|breast(6)|central_nervous_system(10)|cervix(1)|endometrium(21)|kidney(13)|large_intestine(25)|lung(56)|ovary(5)|prostate(8)|skin(6)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	161	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcagcagcaacaacagc	0.562													G|||	37	0.00738818	0.0038	0.0072	5008	,	,		15585	0.002		0.0149	False		,,,				2504	0.0102					ENST00000333577.4																			17	Substitution - coding silent(17)	p.Q2724Q(16)|p.Q2725Q(1)	prostate(4)|kidney(4)|central_nervous_system(3)|lung(3)|endometrium(2)|urinary_tract(1)	NS(1)|breast(6)|central_nervous_system(10)|cervix(1)|endometrium(21)|kidney(13)|large_intestine(25)|lung(56)|ovary(5)|prostate(8)|skin(6)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	161						c.(8281-8283)caG>caA		E1A binding protein p400							28.0	31.0	30.0					12																	132547087		2199	4282	6481	SO:0001819	synonymous_variant	57634				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity	g.chr12:132547087G>A	U80743	CCDS31929.1, CCDS31929.2	12q24.33	2008-02-01	2002-02-05	2002-02-08		ENSG00000183495			11958	protein-coding gene	gene with protein product		606265	"""trinucleotide repeat containing 12"""	TNRC12		9225980, 11509179	Standard	NM_015409		Approved	CAGH32, KIAA1498, P400, KIAA1818, DKFZP434I225	uc001ujn.3	Q96L91		ENST00000333577.4:c.8283G>A	12.37:g.132547087G>A			Somatic				EP400_ENST00000389561.2_Silent_p.Q2725Q|EP400_ENST00000330386.6_Silent_p.Q2644Q|EP400_ENST00000389562.2_Silent_p.Q2724Q|EP400_ENST00000332482.4_Silent_p.Q2688Q	p.Q2761Q			WXS	Illumina GAIIx	Phase_I	Q96L91	EP400_HUMAN		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)	48	8392	+	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)	2761			Interaction with ZNF42 (By similarity).|Poly-Gln.		O15411|Q6P2F5|Q8N8Q7|Q8NE05|Q96JK7|Q9P230	Silent	SNP	ENST00000333577.4	37	c.8283G>A																																																																																					0.562	EP400-203	KNOWN	basic|appris_candidate_longest	protein_coding	protein_coding		NM_015409		3	41	0	0	0	1	0	3	41				
TANC2	26115	broad.mit.edu	37	17	61498656	61498656	+	Silent	SNP	G	G	A			TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr17:61498656G>A	ENST00000424789.2	+	25	5317	c.5313G>A	c.(5311-5313)ccG>ccA	p.P1771P	RP11-269G24.3_ENST00000583552.1_RNA|TANC2_ENST00000389520.4_Silent_p.P1781P	NM_025185.3	NP_079461.2	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	1771					in utero embryonic development (GO:0001701)					breast(1)|central_nervous_system(1)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(15)|ovary(2)|upper_aerodigestive_tract(3)	44						CTCCCAGGCCGTTGCTGCATT	0.522																																						ENST00000424789.2																			0				breast(1)|central_nervous_system(1)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(15)|ovary(2)|upper_aerodigestive_tract(3)	44						c.(5311-5313)ccG>ccA		tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2																																				SO:0001819	synonymous_variant	26115						binding	g.chr17:61498656G>A	AB032974	CCDS45754.1	17q23.3	2013-01-11				ENSG00000170921		"""Ankyrin repeat domain containing"", ""Tetratricopeptide (TTC) repeat domain containing"""	30212	protein-coding gene	gene with protein product	"""rolling pebbles homolog B (Drosophila)"""	615047					Standard	NM_025185		Approved	DKFZP564D166, FLJ10215, FLJ11824, KIAA1148, KIAA1636, rols, ROLSA	uc002jal.4	Q9HCD6		ENST00000424789.2:c.5313G>A	17.37:g.61498656G>A			Somatic				RP11-269G24.3_ENST00000583552.1_RNA|TANC2_ENST00000389520.4_Silent_p.P1781P	p.P1771P	NM_025185.3	NP_079461.2	WXS	Illumina GAIIx	Phase_I	Q9HCD6	TANC2_HUMAN			25	5317	+			1771					Q9HAC3|Q9NW88|Q9NXY9|Q9ULS2	Silent	SNP	ENST00000424789.2	37	c.5313G>A	CCDS45754.1																																																																																				0.522	TANC2-001	KNOWN	not_organism_supported|basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000444765.1			3	59	0	0	0	1	0	3	59				
CYFIP1	23191	broad.mit.edu	37	15	22926017	22926017	+	Silent	SNP	T	T	A			TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr15:22926017T>A	ENST00000313077.7	+	3	284	c.159T>A	c.(157-159)gtT>gtA	p.V53V	CYFIP1_ENST00000560848.1_Silent_p.V53V	NM_014608.2	NP_055423.1			cytoplasmic FMR1 interacting protein 1											endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(9)|liver(1)|lung(14)|ovary(4)|pancreas(3)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	40		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		ATGCATTTGTTACTGGCATCG	0.463																																						ENST00000313077.7																			0				endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(9)|liver(1)|lung(14)|ovary(4)|pancreas(3)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	40						c.(157-159)gtT>gtA		cytoplasmic FMR1 interacting protein 1							154.0	136.0	142.0					15																	22926017		2203	4300	6503	SO:0001819	synonymous_variant	23191				axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding	g.chr15:22926017T>A	D38549	CCDS73695.1, CCDS73696.1	15q11	2008-07-18			ENSG00000068793	ENSG00000273749			13759	protein-coding gene	gene with protein product	"""selective hybridizing clone"", ""cytoplasmic FMRP interacting protein 1"""	606322				11438699	Standard	XM_005272543		Approved	KIAA0068, P140SRA-1, SHYC	uc001yus.3	Q7L576	OTTHUMG00000129100	ENST00000313077.7:c.159T>A	15.37:g.22926017T>A			Somatic				CYFIP1_ENST00000560848.1_Silent_p.V53V	p.V53V	NM_014608.2	NP_055423.1	WXS	Illumina GAIIx	Phase_I	Q7L576	CYFP1_HUMAN		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)	3	284	+		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)	53						Silent	SNP	ENST00000313077.7	37	c.159T>A	CCDS10009.1																																																																																				0.463	CYFIP1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000251136.2	NM_014608		4	108	0	0	0	1	0	4	108				
GNA11	2767	broad.mit.edu	37	19	3118942	3118942	+	Missense_Mutation	SNP	A	A	T			TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr19:3118942A>T	ENST00000078429.4	+	5	868	c.626A>T	c.(625-627)cAg>cTg	p.Q209L	AC005262.2_ENST00000585980.1_RNA|GNA11_ENST00000586180.1_3'UTR|AC005262.3_ENST00000587701.1_RNA	NM_002067.2	NP_002058.2	P29992	GNA11_HUMAN	guanine nucleotide binding protein (G protein), alpha 11 (Gq class)	209					action potential (GO:0001508)|adenylate cyclase-modulating G-protein coupled receptor signaling pathway (GO:0007188)|blood coagulation (GO:0007596)|cellular response to pH (GO:0071467)|developmental pigmentation (GO:0048066)|heart development (GO:0007507)|phospholipase C-activating dopamine receptor signaling pathway (GO:0060158)|platelet activation (GO:0030168)|regulation of melanocyte differentiation (GO:0045634)|signal transduction (GO:0007165)|skeletal system development (GO:0001501)	cytoplasm (GO:0005737)|extracellular vesicular exosome (GO:0070062)|heterotrimeric G-protein complex (GO:0005834)|lysosomal membrane (GO:0005765)|plasma membrane (GO:0005886)	G-protein beta/gamma-subunit complex binding (GO:0031683)|GTP binding (GO:0005525)|GTPase activity (GO:0003924)|metal ion binding (GO:0046872)|signal transducer activity (GO:0004871)|type 2A serotonin receptor binding (GO:0031826)	p.Q209L(80)|p.Q209P(2)		endometrium(2)|eye(132)|kidney(1)|large_intestine(2)|lung(1)|meninges(5)|ovary(1)|prostate(1)|skin(16)	161		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.79e-05)|OV - Ovarian serous cystadenocarcinoma(105;2.68e-113)|Epithelial(107;1.22e-111)|all cancers(105;5.78e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00141)|STAD - Stomach adenocarcinoma(1328;0.181)		GTGGGGGGCCAGCGGTCGGAG	0.612			Mis		uveal melanoma																																	ENST00000078429.4				Dom	yes		19	19p13.3	2767	Mis	"""guanine nucleotide binding protein (G protein), alpha 11 (Gq class)"""			E			uveal melanoma		82	Substitution - Missense(82)	p.Q209L(80)|p.Q209P(2)	eye(69)|skin(8)|meninges(5)	endometrium(2)|eye(132)|kidney(1)|large_intestine(2)|lung(1)|meninges(5)|ovary(1)|prostate(1)|skin(16)	161						c.(625-627)cAg>cTg		guanine nucleotide binding protein (G protein), alpha 11 (Gq class)							104.0	89.0	94.0					19																	3118942		2203	4300	6503	SO:0001583	missense	2767				activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation|regulation of action potential	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity	g.chr19:3118942A>T	AF493900	CCDS12103.1	19p13.3	2014-02-04			ENSG00000088256	ENSG00000088256			4379	protein-coding gene	gene with protein product		139313	"""hypocalciuric hypercalcemia 2"""	HHC2		1302014, 23802516	Standard	NM_002067		Approved	FBH, FBH2, FHH2	uc002lxd.3	P29992	OTTHUMG00000180631	ENST00000078429.4:c.626A>T	19.37:g.3118942A>T	ENSP00000078429:p.Gln209Leu		Somatic				AC005262.3_ENST00000587701.1_RNA|GNA11_ENST00000586180.1_3'UTR	p.Q209L	NM_002067.2	NP_002058.2	WXS	Illumina GAIIx	Phase_I	P29992	GNA11_HUMAN		UCEC - Uterine corpus endometrioid carcinoma (162;6.79e-05)|OV - Ovarian serous cystadenocarcinoma(105;2.68e-113)|Epithelial(107;1.22e-111)|all cancers(105;5.78e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00141)|STAD - Stomach adenocarcinoma(1328;0.181)	5	868	+		Hepatocellular(1079;0.137)	209					O15109|Q14350|Q6IB00	Missense_Mutation	SNP	ENST00000078429.4	37	c.626A>T	CCDS12103.1	.	.	.	.	.	.	.	.	.	.	.	15.05	2.718086	0.48622	.	.	ENSG00000088256	ENST00000078429	D	0.91237	-2.81	3.26	3.26	0.37387	.	0.000000	0.64402	U	0.000006	D	0.96950	0.9004	H	0.99357	4.53	0.80722	D	1	D	0.59767	0.986	D	0.68483	0.958	D	0.96823	0.9605	10	0.87932	D	0	.	10.7338	0.46113	1.0:0.0:0.0:0.0	.	209	P29992	GNA11_HUMAN	L	209	ENSP00000078429:Q209L	ENSP00000078429:Q209L	Q	+	2	0	GNA11	3069942	1.000000	0.71417	0.438000	0.26821	0.027000	0.11550	9.104000	0.94239	1.256000	0.44068	0.379000	0.24179	CAG		0.612	GNA11-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000452261.2	NM_002067		21	25	0	0	0	1	0	21	25				
WDR3	10885	broad.mit.edu	37	1	118477140	118477140	+	Silent	SNP	C	C	T			TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr1:118477140C>T	ENST00000349139.5	+	3	263	c.216C>T	c.(214-216)tgC>tgT	p.C72C	WDR3_ENST00000471680.1_3'UTR|WDR3_ENST00000369441.3_3'UTR	NM_006784.2	NP_006775.1	Q9UNX4	WDR3_HUMAN	WD repeat domain 3	72						nuclear membrane (GO:0031965)|nucleolus (GO:0005730)|nucleus (GO:0005634)	poly(A) RNA binding (GO:0044822)	p.C72C(1)		breast(2)|cervix(2)|endometrium(5)|kidney(4)|large_intestine(9)|liver(2)|lung(22)|prostate(2)|upper_aerodigestive_tract(1)	49	Esophageal squamous(2;0.162)	all_cancers(81;2.72e-05)|Acute lymphoblastic leukemia(138;1e-08)|all_epithelial(167;4.4e-07)|all_lung(203;1.7e-06)|Lung NSC(69;1.98e-05)|Prostate(1639;0.00955)|Breast(1374;0.244)		OV - Ovarian serous cystadenocarcinoma(397;1.39e-08)|Epithelial(280;1.82e-07)|all cancers(265;2.04e-05)|Lung(183;0.0525)|BRCA - Breast invasive adenocarcinoma(282;0.0695)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.185)		CTTGCTTATGCCCCTCCCCAG	0.428																																						ENST00000349139.5																			1	Substitution - coding silent(1)	p.C72C(1)	lung(1)	breast(2)|cervix(2)|endometrium(5)|kidney(4)|large_intestine(9)|liver(2)|lung(22)|prostate(2)|upper_aerodigestive_tract(1)	49						c.(214-216)tgC>tgT		WD repeat domain 3							120.0	116.0	117.0					1																	118477140		2203	4300	6503	SO:0001819	synonymous_variant	10885					nuclear membrane|nucleolus		g.chr1:118477140C>T	AF083217	CCDS898.1	1p12	2013-01-09			ENSG00000065183	ENSG00000065183		"""WD repeat domain containing"""	12755	protein-coding gene	gene with protein product		604737				10395803	Standard	NM_006784		Approved	FLJ12796, UTP12, DIP2	uc010oxe.1	Q9UNX4	OTTHUMG00000012197	ENST00000349139.5:c.216C>T	1.37:g.118477140C>T			Somatic				WDR3_ENST00000471680.1_3'UTR|WDR3_ENST00000369441.3_3'UTR	p.C72C	NM_006784.2	NP_006775.1	WXS	Illumina GAIIx	Phase_I	Q9UNX4	WDR3_HUMAN		OV - Ovarian serous cystadenocarcinoma(397;1.39e-08)|Epithelial(280;1.82e-07)|all cancers(265;2.04e-05)|Lung(183;0.0525)|BRCA - Breast invasive adenocarcinoma(282;0.0695)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.185)	3	263	+	Esophageal squamous(2;0.162)	all_cancers(81;2.72e-05)|Acute lymphoblastic leukemia(138;1e-08)|all_epithelial(167;4.4e-07)|all_lung(203;1.7e-06)|Lung NSC(69;1.98e-05)|Prostate(1639;0.00955)|Breast(1374;0.244)							Silent	SNP	ENST00000349139.5	37	c.216C>T	CCDS898.1																																																																																				0.428	WDR3-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000033720.2	NM_006784		3	52	0	0	0	1	0	3	52				
EXOC5	10640	broad.mit.edu	37	14	57676363	57676363	+	Silent	SNP	T	T	C			TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr14:57676363T>C	ENST00000413566.2	-	17	2219	c.1860A>G	c.(1858-1860)caA>caG	p.Q620Q	EXOC5_ENST00000340918.7_Silent_p.Q555Q	NM_006544.3	NP_006535.1	O00471	EXOC5_HUMAN	exocyst complex component 5	620					cellular protein metabolic process (GO:0044267)|exocytosis (GO:0006887)|membrane organization (GO:0061024)|post-Golgi vesicle-mediated transport (GO:0006892)|protein transport (GO:0015031)|vesicle docking (GO:0048278)	cytoplasm (GO:0005737)|cytosol (GO:0005829)				breast(3)|endometrium(1)|large_intestine(3)|lung(10)|ovary(3)|skin(1)|upper_aerodigestive_tract(1)	22						TGTAGGAATATTGTTGAAGAT	0.388																																						ENST00000413566.2																			0				breast(3)|endometrium(1)|large_intestine(3)|lung(10)|ovary(3)|skin(1)|upper_aerodigestive_tract(1)	22						c.(1858-1860)caA>caG		exocyst complex component 5							118.0	104.0	109.0					14																	57676363		1900	4132	6032	SO:0001819	synonymous_variant	10640				exocytosis|post-Golgi vesicle-mediated transport|protein transport|vesicle docking	cytoplasm		g.chr14:57676363T>C	U85946	CCDS45111.1	14q22.3	2013-01-22	2005-11-01	2005-11-01	ENSG00000070367	ENSG00000070367			10696	protein-coding gene	gene with protein product		604469	"""SEC10 (S. cerevisiae)-like 1"", ""SEC10-like 1 (S. cerevisiae)"""	SEC10L1		9119050	Standard	XM_005267272		Approved	SEC10, SEC10P	uc001xct.3	O00471	OTTHUMG00000171309	ENST00000413566.2:c.1860A>G	14.37:g.57676363T>C			Somatic				EXOC5_ENST00000340918.7_Silent_p.Q555Q	p.Q620Q	NM_006544.3	NP_006535.1	WXS	Illumina GAIIx	Phase_I	O00471	EXOC5_HUMAN			17	2219	-			620					B2R6C5	Silent	SNP	ENST00000413566.2	37	c.1860A>G	CCDS45111.1																																																																																				0.388	EXOC5-001	KNOWN	upstream_uORF|basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000412905.1	NM_006544		9	14	0	0	0	1	0	9	14				
GPAA1	8733	broad.mit.edu	37	8	145138937	145138937	+	Missense_Mutation	SNP	G	G	C	rs566122290	byFrequency	TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr8:145138937G>C	ENST00000355091.4	+	5	731	c.610G>C	c.(610-612)Gtc>Ctc	p.V204L	GPAA1_ENST00000361036.6_Missense_Mutation_p.V144L|GPAA1_ENST00000527144.1_3'UTR	NM_003801.3	NP_003792.1	O43292	GPAA1_HUMAN	glycosylphosphatidylinositol anchor attachment 1	204					attachment of GPI anchor to protein (GO:0016255)|C-terminal protein lipidation (GO:0006501)|cellular protein metabolic process (GO:0044267)|post-translational protein modification (GO:0043687)|protein complex assembly (GO:0006461)|protein retention in ER lumen (GO:0006621)	endoplasmic reticulum membrane (GO:0005789)|GPI-anchor transamidase complex (GO:0042765)|membrane (GO:0016020)	tubulin binding (GO:0015631)			breast(1)|endometrium(2)|kidney(1)|large_intestine(3)|lung(10)|upper_aerodigestive_tract(2)	19	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.02e-40)|all cancers(56;2.11e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CGATGTCAATGTCACTGGTAG	0.532																																						ENST00000355091.4																			0				breast(1)|endometrium(2)|kidney(1)|large_intestine(3)|lung(10)|upper_aerodigestive_tract(2)	19						c.(610-612)Gtc>Ctc		glycosylphosphatidylinositol anchor attachment 1							87.0	92.0	91.0					8																	145138937		2158	4256	6414	SO:0001583	missense	8733				attachment of GPI anchor to protein|C-terminal protein lipidation|protein complex assembly|protein retention in ER lumen	GPI-anchor transamidase complex	tubulin binding	g.chr8:145138937G>C	AB006969	CCDS43776.1	8q24.3	2012-12-10	2012-12-10		ENSG00000197858	ENSG00000197858			4446	protein-coding gene	gene with protein product	"""GPI transamidase subunit"""	603048	"""anchor attachment protein 1 (Gaa1p, yeast) homolog"", ""GPAA1P anchor attachment protein 1 homolog (yeast)"", ""glycosylphosphatidylinositol anchor attachment protein 1 homolog (yeast)"""			9828142	Standard	NM_003801		Approved	GAA1, hGAA1	uc003zax.3	O43292	OTTHUMG00000165438	ENST00000355091.4:c.610G>C	8.37:g.145138937G>C	ENSP00000347206:p.Val204Leu		Somatic				GPAA1_ENST00000527144.1_3'UTR|GPAA1_ENST00000361036.6_Missense_Mutation_p.V144L	p.V204L	NM_003801.3	NP_003792.1	WXS	Illumina GAIIx	Phase_I	O43292	GPAA1_HUMAN	OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.02e-40)|all cancers(56;2.11e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		5	731	+	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		204					Q9NSS0|Q9UQ31	Missense_Mutation	SNP	ENST00000355091.4	37	c.610G>C	CCDS43776.1	.	.	.	.	.	.	.	.	.	.	G	10.60	1.394711	0.25205	.	.	ENSG00000197858	ENST00000355091;ENST00000525087;ENST00000361036;ENST00000524418	.	.	.	5.47	-0.0141	0.13982	.	0.544817	0.20464	N	0.091823	T	0.21186	0.0510	N	0.14661	0.345	0.09310	N	1	B;B	0.18166	0.02;0.026	B;B	0.23716	0.047;0.048	T	0.28839	-1.0031	9	0.09338	T	0.73	-22.8332	10.121	0.42621	0.4187:0.0:0.5813:0.0	.	204;144	O43292;O43292-2	GPAA1_HUMAN;.	L	204;132;144;190	.	ENSP00000347206:V204L	V	+	1	0	GPAA1	145210925	0.734000	0.28142	0.357000	0.25798	0.941000	0.58515	0.750000	0.26334	0.044000	0.15775	0.561000	0.74099	GTC		0.532	GPAA1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000384070.1	NM_003801		4	108	0	0	0	1	0	4	108				
ARHGDIA	396	broad.mit.edu	37	17	79827106	79827106	+	Nonsense_Mutation	SNP	G	G	A			TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr17:79827106G>A	ENST00000269321.7	-	5	493	c.358C>T	c.(358-360)Cga>Tga	p.R120*	ARHGDIA_ENST00000541078.2_Nonsense_Mutation_p.R120*|RP11-498C9.3_ENST00000576554.1_RNA|RP11-498C9.3_ENST00000576021.1_RNA|ARHGDIA_ENST00000582520.1_5'Flank|ARHGDIA_ENST00000580685.1_Nonsense_Mutation_p.R120*|ARHGDIA_ENST00000581876.1_Intron|ARHGDIA_ENST00000400721.4_Nonsense_Mutation_p.R120*|ARHGDIA_ENST00000584461.1_Nonsense_Mutation_p.R120*	NM_001185078.1|NM_004309.4	NP_001172007.1|NP_004300.1	P52565	GDIR1_HUMAN	Rho GDP dissociation inhibitor (GDI) alpha	120					cellular component movement (GO:0006928)|negative regulation of apoptotic process (GO:0043066)|negative regulation of axonogenesis (GO:0050771)|negative regulation of cell adhesion (GO:0007162)|neurotrophin TRK receptor signaling pathway (GO:0048011)|positive regulation of axonogenesis (GO:0050772)|regulation of axonogenesis (GO:0050770)|regulation of protein localization (GO:0032880)|regulation of small GTPase mediated signal transduction (GO:0051056)|Rho protein signal transduction (GO:0007266)|semaphorin-plexin signaling pathway (GO:0071526)|small GTPase mediated signal transduction (GO:0007264)	cytoskeleton (GO:0005856)|cytosol (GO:0005829)|extracellular vesicular exosome (GO:0070062)|immunological synapse (GO:0001772)	GTPase activator activity (GO:0005096)|Rho GDP-dissociation inhibitor activity (GO:0005094)			endometrium(1)|lung(1)|prostate(1)	3	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			ACTATCTCTCGGTTAACCTGC	0.642																																						ENST00000269321.7																			0				endometrium(1)|lung(1)|prostate(1)	3						c.(358-360)Cga>Tga		Rho GDP dissociation inhibitor (GDI) alpha							70.0	68.0	69.0					17																	79827106		2203	4300	6503	SO:0001587	stop_gained	396				anti-apoptosis|cellular component movement|negative regulation of axonogenesis|negative regulation of cell adhesion|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis|regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytoskeleton|cytosol	GTPase activator activity|identical protein binding|Rho GDP-dissociation inhibitor activity	g.chr17:79827106G>A	BC028333	CCDS11788.1, CCDS58609.1	17q25.3	2005-12-20				ENSG00000141522			678	protein-coding gene	gene with protein product		601925		GDIA1		9186513	Standard	NM_001185077		Approved	RHOGDI	uc002kbq.3	P52565		ENST00000269321.7:c.358C>T	17.37:g.79827106G>A	ENSP00000269321:p.Arg120*		Somatic				ARHGDIA_ENST00000580685.1_Nonsense_Mutation_p.R120*|ARHGDIA_ENST00000541078.2_Nonsense_Mutation_p.R120*|ARHGDIA_ENST00000400721.4_Nonsense_Mutation_p.R120*|ARHGDIA_ENST00000581876.1_Intron|ARHGDIA_ENST00000584461.1_Nonsense_Mutation_p.R120*	p.R120*	NM_001185078.1|NM_004309.4	NP_001172007.1|NP_004300.1	WXS	Illumina GAIIx	Phase_I	P52565	GDIR1_HUMAN	BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)		5	493	-	all_neural(118;0.0878)|Ovarian(332;0.12)		120					A8MXW0|B2R5X1|B4DDD3|B4DUV9|Q6IBM5	Nonsense_Mutation	SNP	ENST00000269321.7	37	c.358C>T	CCDS11788.1	.	.	.	.	.	.	.	.	.	.	T	39	7.431408	0.98279	.	.	ENSG00000141522	ENST00000269321;ENST00000541078;ENST00000400721	.	.	.	4.45	-0.408	0.12381	.	0.288011	0.33161	N	0.005205	.	.	.	.	.	.	0.46078	D	0.998853	.	.	.	.	.	.	.	.	.	.	0.02654	T	1	-9.8482	6.1098	0.20094	0.1016:0.0757:0.5587:0.264	.	.	.	.	X	120	.	ENSP00000269321:R120X	R	-	1	2	ARHGDIA	77420395	0.992000	0.36948	0.092000	0.20876	0.353000	0.29299	1.520000	0.35899	-0.565000	0.06061	-0.520000	0.04383	CGA		0.642	ARHGDIA-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000441679.2	NM_004309		17	19	0	0	0	1	0	17	19				
COL9A1	1297	broad.mit.edu	37	6	70964709	70964709	+	Missense_Mutation	SNP	C	C	T			TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr6:70964709C>T	ENST00000357250.6	-	24	1780	c.1622G>A	c.(1621-1623)gGt>gAt	p.G541D	COL9A1_ENST00000489611.1_5'UTR|COL9A1_ENST00000370499.4_Missense_Mutation_p.G298D|COL9A1_ENST00000320755.7_Missense_Mutation_p.G298D	NM_001851.4	NP_001842.3	P20849	CO9A1_HUMAN	collagen, type IX, alpha 1	541	Triple-helical region (COL2).				axon guidance (GO:0007411)|collagen catabolic process (GO:0030574)|extracellular matrix disassembly (GO:0022617)|extracellular matrix organization (GO:0030198)|growth plate cartilage development (GO:0003417)|organ morphogenesis (GO:0009887)|tissue homeostasis (GO:0001894)	collagen type IX trimer (GO:0005594)|endoplasmic reticulum lumen (GO:0005788)|extracellular region (GO:0005576)|proteinaceous extracellular matrix (GO:0005578)	extracellular matrix structural constituent conferring tensile strength (GO:0030020)|metal ion binding (GO:0046872)			breast(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(10)|lung(44)|ovary(5)|prostate(2)|skin(6)|stomach(1)|upper_aerodigestive_tract(4)	80						GCCATCCACACCTGGCAAACC	0.453																																						ENST00000357250.6																			0				breast(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(10)|lung(44)|ovary(5)|prostate(2)|skin(6)|stomach(1)|upper_aerodigestive_tract(4)	80						c.(1621-1623)gGt>gAt		collagen, type IX, alpha 1							140.0	124.0	129.0					6																	70964709		2203	4300	6503	SO:0001583	missense	1297				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding	g.chr6:70964709C>T		CCDS4971.1, CCDS47447.1	6q13	2013-05-07			ENSG00000112280	ENSG00000112280		"""Proteoglycans / Extracellular Matrix : Collagen proteoglycans"", ""Collagens"""	2217	protein-coding gene	gene with protein product		120210				1429648	Standard	NM_001851		Approved		uc003pfg.4	P20849	OTTHUMG00000014988	ENST00000357250.6:c.1622G>A	6.37:g.70964709C>T	ENSP00000349790:p.Gly541Asp		Somatic				COL9A1_ENST00000489611.1_5'UTR|COL9A1_ENST00000370499.4_Missense_Mutation_p.G298D|COL9A1_ENST00000320755.7_Missense_Mutation_p.G298D	p.G541D	NM_001851.4	NP_001842.3	WXS	Illumina GAIIx	Phase_I	P20849	CO9A1_HUMAN			24	1780	-			541			Triple-helical region (COL2).		Q13699|Q13700|Q5TF52|Q6P467|Q96BM8|Q99225|Q9H151|Q9H152|Q9Y6P2|Q9Y6P3	Missense_Mutation	SNP	ENST00000357250.6	37	c.1622G>A	CCDS4971.1	.	.	.	.	.	.	.	.	.	.	C	18.07	3.541624	0.65085	.	.	ENSG00000112280	ENST00000357250;ENST00000320755;ENST00000370499	D;D;D	0.99619	-5.52;-6.28;-5.77	5.38	5.38	0.77491	.	0.000000	0.85682	D	0.000000	D	0.99873	0.9940	H	0.99454	4.575	0.80722	D	1	D;D;D	0.89917	1.0;1.0;1.0	D;D;D	0.97110	0.992;1.0;1.0	D	0.96412	0.9305	10	0.87932	D	0	.	17.6661	0.88203	0.0:1.0:0.0:0.0	.	541;298;114	P20849;P20849-2;B3KWS8	CO9A1_HUMAN;.;.	D	541;298;298	ENSP00000349790:G541D;ENSP00000315252:G298D;ENSP00000359530:G298D	ENSP00000315252:G298D	G	-	2	0	COL9A1	71021430	1.000000	0.71417	1.000000	0.80357	0.974000	0.67602	4.634000	0.61325	2.680000	0.91292	0.655000	0.94253	GGT		0.453	COL9A1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000041131.2			16	0	0	0	0	1	0	16	0				
C3	718	broad.mit.edu	37	19	6710848	6710848	+	Missense_Mutation	SNP	G	G	T			TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr19:6710848G>T	ENST00000245907.6	-	13	1580	c.1488C>A	c.(1486-1488)aaC>aaA	p.N496K		NM_000064.2	NP_000055.2	P01024	CO3_HUMAN	complement component 3	496					complement activation (GO:0006956)|complement activation, alternative pathway (GO:0006957)|complement activation, classical pathway (GO:0006958)|fatty acid metabolic process (GO:0006631)|G-protein coupled receptor signaling pathway (GO:0007186)|immune response (GO:0006955)|inflammatory response (GO:0006954)|innate immune response (GO:0045087)|positive regulation of activation of membrane attack complex (GO:0001970)|positive regulation of angiogenesis (GO:0045766)|positive regulation of apoptotic cell clearance (GO:2000427)|positive regulation of G-protein coupled receptor protein signaling pathway (GO:0045745)|positive regulation of glucose transport (GO:0010828)|positive regulation of lipid storage (GO:0010884)|positive regulation of protein phosphorylation (GO:0001934)|positive regulation of type IIa hypersensitivity (GO:0001798)|positive regulation vascular endothelial growth factor production (GO:0010575)|regulation of complement activation (GO:0030449)|regulation of immune response (GO:0050776)|regulation of triglyceride biosynthetic process (GO:0010866)|signal transduction (GO:0007165)	blood microparticle (GO:0072562)|extracellular region (GO:0005576)|extracellular space (GO:0005615)|extracellular vesicular exosome (GO:0070062)|plasma membrane (GO:0005886)	C5L2 anaphylatoxin chemotactic receptor binding (GO:0031715)|endopeptidase inhibitor activity (GO:0004866)|receptor binding (GO:0005102)			breast(5)|endometrium(7)|kidney(6)|large_intestine(18)|liver(1)|lung(18)|ovary(1)|pancreas(1)|prostate(5)|skin(7)|upper_aerodigestive_tract(3)	72				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)	Intravenous Immunoglobulin(DB00028)	GCCTGCCCTTGTTCATGATCT	0.667																																						ENST00000245907.6																			0				breast(5)|endometrium(7)|kidney(6)|large_intestine(18)|liver(1)|lung(18)|ovary(1)|pancreas(1)|prostate(5)|skin(7)|upper_aerodigestive_tract(3)	72						c.(1486-1488)aaC>aaA		complement component 3							35.0	38.0	37.0					19																	6710848		2203	4300	6503	SO:0001583	missense	718				complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding	g.chr19:6710848G>T	J04763	CCDS32883.1	19p13.3-p13.2	2014-09-17			ENSG00000125730	ENSG00000125730	3.4.21.43	"""Complement system"", ""Endogenous ligands"""	1318	protein-coding gene	gene with protein product	"""C3a anaphylatoxin"", ""complement component C3a"", ""complement component C3b"", ""prepro-C3"""	120700					Standard	NM_000064		Approved	CPAMD1, ARMD9, C3a, C3b	uc002mfm.3	P01024	OTTHUMG00000150335	ENST00000245907.6:c.1488C>A	19.37:g.6710848G>T	ENSP00000245907:p.Asn496Lys		Somatic					p.N496K	NM_000064.2	NP_000055.2	WXS	Illumina GAIIx	Phase_I	P01024	CO3_HUMAN		GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)	13	1580	-			496					A7E236	Missense_Mutation	SNP	ENST00000245907.6	37	c.1488C>A	CCDS32883.1	.	.	.	.	.	.	.	.	.	.	G	15.35	2.806118	0.50421	.	.	ENSG00000125730	ENST00000245907	T	0.62639	0.01	5.31	5.31	0.75309	Alpha-2-macroglobulin, N-terminal 2 (1);	0.123057	0.64402	D	0.000001	T	0.78477	0.4289	M	0.83852	2.665	0.31869	N	0.619951	D	0.56746	0.977	D	0.66979	0.948	T	0.83210	-0.0074	10	0.87932	D	0	.	11.957	0.52986	0.0841:0.0:0.9159:0.0	.	496	P01024	CO3_HUMAN	K	496	ENSP00000245907:N496K	ENSP00000245907:N496K	N	-	3	2	C3	6661848	1.000000	0.71417	0.993000	0.49108	0.051000	0.14879	3.236000	0.51336	2.499000	0.84300	0.655000	0.94253	AAC		0.667	C3-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000317636.2	NM_000064		15	10	1	0	2.32078e-09	1	2.32078e-09	15	10				
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G	rs2257765		TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr10:38654432A>G	ENST00000494540.1	+	0	599					NR_003086.1				hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2																		TCATCTCGCAATGCAAGGAAA	0.453																																						ENST00000494540.1																			0																																																			0							g.chr10:38654432A>G			10p11.1	2011-06-29			ENSG00000099251	ENSG00000099251			28120	pseudogene	pseudogene						10544267	Standard	NR_003086		Approved	HSD17B7, bA291L22.1	uc010qex.1		OTTHUMG00000017993		10.37:g.38654432A>G			Somatic						NR_003086.1		WXS	Illumina GAIIx	Phase_I					0	599	+									RNA	SNP	ENST00000494540.1	37																																																																																						0.453	HSD17B7P2-001	KNOWN	basic	processed_transcript	pseudogene	OTTHUMT00000047631.2	NR_003086		4	43	0	0	0	1	0	4	43				
CMYA5	202333	broad.mit.edu	37	5	79032425	79032425	+	Missense_Mutation	SNP	A	A	C			TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr5:79032425A>C	ENST00000446378.2	+	2	7868	c.7837A>C	c.(7837-7839)Aag>Cag	p.K2613Q		NM_153610.3	NP_705838.3	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2613					negative regulation of calcineurin-NFAT signaling cascade (GO:0070885)|negative regulation of protein phosphatase type 2B activity (GO:0032513)|regulation of skeletal muscle adaptation (GO:0014733)	costamere (GO:0043034)				NS(2)|breast(4)|central_nervous_system(1)|cervix(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(4)|kidney(4)|large_intestine(37)|lung(34)|ovary(6)|pancreas(2)|prostate(5)|skin(5)|stomach(11)|upper_aerodigestive_tract(3)|urinary_tract(1)	128		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CAGAGAAGCAAAGGCAGTAGG	0.418																																						ENST00000446378.2																			0				NS(2)|breast(4)|central_nervous_system(1)|cervix(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(4)|kidney(4)|large_intestine(37)|lung(34)|ovary(6)|pancreas(2)|prostate(5)|skin(5)|stomach(11)|upper_aerodigestive_tract(3)|urinary_tract(1)	128						c.(7837-7839)Aag>Cag		cardiomyopathy associated 5							65.0	67.0	66.0					5																	79032425		1862	4100	5962	SO:0001583	missense	202333					perinuclear region of cytoplasm		g.chr5:79032425A>C	AW755254, AL831986	CCDS47238.1	5q14.1	2013-02-11			ENSG00000164309	ENSG00000164309		"""Tripartite motif containing / Tripartite motif containing"", ""A-kinase anchor proteins"", ""Fibronectin type III domain containing"""	14305	protein-coding gene	gene with protein product	"""genethonin-3"", ""tripartite motif-containing 76"""	612193	"""chromosome 5 open reading frame 10"""	C5orf10		14688250	Standard	NM_153610		Approved	myospryn, SPRYD2, DKFZp451G223, TRIM76	uc003kgc.3	Q8N3K9	OTTHUMG00000162548	ENST00000446378.2:c.7837A>C	5.37:g.79032425A>C	ENSP00000394770:p.Lys2613Gln		Somatic					p.K2613Q	NM_153610.3	NP_705838.3	WXS	Illumina GAIIx	Phase_I	Q8N3K9	CMYA5_HUMAN		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)	2	7868	+		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)	2613					A0PJB7|Q05CT4|Q2NKX1|Q2T9G9|Q69YQ8|Q69YQ9|Q6P517|Q6P5U3|Q7Z4I1|Q86T34|Q86T49|Q8N3S4|Q8N3S7|Q8NAG8|Q9UK88	Missense_Mutation	SNP	ENST00000446378.2	37	c.7837A>C	CCDS47238.1	.	.	.	.	.	.	.	.	.	.	A	15.46	2.838706	0.51057	.	.	ENSG00000164309	ENST00000446378	T	0.28895	1.59	5.14	3.97	0.46021	.	0.341296	0.25419	N	0.030815	T	0.42630	0.1211	L	0.49126	1.545	0.20196	N	0.999921	D	0.76494	0.999	D	0.64144	0.922	T	0.19614	-1.0300	10	0.56958	D	0.05	.	7.5711	0.27909	0.9017:0.0:0.0983:0.0	.	2613	Q8N3K9	CMYA5_HUMAN	Q	2613	ENSP00000394770:K2613Q	ENSP00000394770:K2613Q	K	+	1	0	CMYA5	79068181	0.411000	0.25384	0.989000	0.46669	0.566000	0.35808	1.060000	0.30530	0.800000	0.34041	0.459000	0.35465	AAG		0.418	CMYA5-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000369497.1	NM_153610		19	23	0	0	0	1	0	19	23				
MAPKAPK5	8550	broad.mit.edu	37	12	112306587	112306587	+	Frame_Shift_Del	DEL	G	G	-			TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr12:112306587delG	ENST00000551404.2	+	5	423	c.315delG	c.(313-315)atgfs	p.M105fs	MAPKAPK5_ENST00000546394.1_Intron|MAPKAPK5_ENST00000550735.2_Frame_Shift_Del_p.M105fs			Q8IW41	MAPK5_HUMAN	mitogen-activated protein kinase-activated protein kinase 5	105	Protein kinase. {ECO:0000255|PROSITE- ProRule:PRU00159}.				activation of MAPK activity (GO:0000187)|MAPK cascade (GO:0000165)|negative regulation of TOR signaling (GO:0032007)|protein autophosphorylation (GO:0046777)|Ras protein signal transduction (GO:0007265)|regulation of translation (GO:0006417)|signal transduction (GO:0007165)|stress-induced premature senescence (GO:0090400)	cytoplasm (GO:0005737)|nucleoplasm (GO:0005654)|nucleus (GO:0005634)	ATP binding (GO:0005524)|MAP kinase kinase activity (GO:0004708)|p53 binding (GO:0002039)|protein serine/threonine kinase activity (GO:0004674)			endometrium(1)|lung(11)|ovary(1)	13						TGGAGATGATGGAAGGGGGAG	0.403																																						ENST00000550735.2																			0				endometrium(1)|lung(11)|ovary(1)	13						c.(313-315)atgfs		mitogen-activated protein kinase-activated protein kinase 5							25.0	23.0	23.0					12																	112306587		1879	4099	5978	SO:0001589	frameshift_variant	8550				signal transduction	cytoplasm|nucleus	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity	g.chr12:112306587delG	AF032437	CCDS44975.1, CCDS44976.1	12q24.13	2012-05-30			ENSG00000089022	ENSG00000089022			6889	protein-coding gene	gene with protein product		606723				9628874	Standard	NM_003668		Approved	PRAK	uc001tta.4	Q8IW41	OTTHUMG00000169605	ENST00000551404.2:c.315delG	12.37:g.112306587delG	ENSP00000449381:p.Met105fs		Somatic				MAPKAPK5_ENST00000546394.1_Intron|MAPKAPK5_ENST00000551404.2_Frame_Shift_Del_p.M105fs	p.M105fs	NM_003668.2|NM_139078.1	NP_003659.2|NP_620777.1	WXS	Illumina GAIIx	Phase_I	Q8IW41	MAPK5_HUMAN			5	1071	+			105			Protein kinase.		B3KVA5|O60491|Q86X46|Q9BVX9|Q9UG86	Frame_Shift_Del	DEL	ENST00000551404.2	37	c.315delG	CCDS44975.1																																																																																				0.403	MAPKAPK5-002	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000405019.2	NM_139078		2	4						2	4	---	---	---	---
MFSD12	126321	broad.mit.edu	37	19	3557210	3557212	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-V4-A9F5-01A-11D-A39W-08	TCGA-V4-A9F5-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae46b873-ecff-4701-a5ed-f1b222f8b37a	44b54082-d4f3-4a61-91dd-0e6ad3ff3a33	g.chr19:3557210_3557212delCAG	ENST00000355415.2	-	1	359_361	c.190_192delCTG	c.(190-192)ctgdel	p.L64del	MFSD12_ENST00000389395.3_In_Frame_Del_p.L64del|AC005786.5_ENST00000592368.1_lincRNA|MFSD12_ENST00000398558.4_In_Frame_Del_p.L64del|MFSD12_ENST00000591878.1_Intron|AC005786.7_ENST00000589360.1_RNA	NM_174983.3	NP_778148.2	Q6NUT3	MFS12_HUMAN	major facilitator superfamily domain containing 12	64					transport (GO:0006810)	integral component of membrane (GO:0016021)|lysosomal membrane (GO:0005765)				cervix(1)|endometrium(2)|lung(4)|urinary_tract(2)	9						CCACCTGGCCCAGCAGCAGCAGC	0.729																																						ENST00000355415.2																			0				cervix(1)|endometrium(2)|lung(4)|urinary_tract(2)	9						c.(190-192)ctgdel		major facilitator superfamily domain containing 12			,,	218,3538		76,66,1736					,,	3.8	1.0			13	721,7105		240,241,3432	no	coding,coding,coding	C19orf28	NM_174983.3,NM_021731.2,NM_001042680.1	,,	316,307,5168	A1A1,A1R,RR		9.2129,5.804,8.1074	,,	,,		939,10643				SO:0001651	inframe_deletion	126321				transmembrane transport	integral to membrane		g.chr19:3557210_3557212delCAG	AF218008	CCDS42465.1, CCDS74256.1	19p13.3	2012-03-09	2011-11-24	2011-11-24	ENSG00000161091	ENSG00000161091			28299	protein-coding gene	gene with protein product			"""chromosome 19 open reading frame 28"""	C19orf28		12477932	Standard	NM_174983		Approved	MGC20700, PP3501	uc002lxw.3	Q6NUT3		ENST00000355415.2:c.190_192delCTG	19.37:g.3557219_3557221delCAG	ENSP00000347583:p.Leu64del		Somatic				MFSD12_ENST00000398558.4_In_Frame_Del_p.L64del|MFSD12_ENST00000591878.1_Intron|MFSD12_ENST00000389395.3_In_Frame_Del_p.L64del|AC005786.7_ENST00000589360.1_RNA	p.L64del	NM_174983.3	NP_778148.2	WXS	Illumina GAIIx	Phase_I	Q6NUT3	CS028_HUMAN			1	359_361	-			64					A8MXP7|D6W615|E9PAJ8|Q8N459	In_Frame_Del	DEL	ENST00000355415.2	37	c.190_192delCTG	CCDS42465.1																																																																																				0.729	MFSD12-001	KNOWN	basic|appris_candidate|CCDS	protein_coding	protein_coding	OTTHUMT00000452949.2	NM_174983		2	4						2	4	---	---	---	---
