Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source
ABCA12	26154	genome.wustl.edu	37	2	215835046	215835046	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	2	215835046	215835046	G	A	SNP	ABCA12	ENST00000272895	human	ensembl	70_37	-1	known	nonsense	c.5641	p.R1881*	0.138	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC
ADAMTS20	80070	genome.wustl.edu	37	12	43856750	43856750	+	Missense_Mutation	SNP	C	C	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	12	43856750	43856750	C	T	SNP	ADAMTS20	ENST00000389420	human	ensembl	70_37	-1	known	missense	c.1562	p.C521Y	1.000	NULL	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC
ANKRD13C	81573	genome.wustl.edu	37	1	70736563	70736563	+	Missense_Mutation	SNP	G	G	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	1	70736563	70736563	G	T	SNP	ANKRD13C	ENST00000370944	human	ensembl	70_37	-1	known	missense	c.1471	p.P491T	1.000	pfam_ANKRD13	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD13C	HGNC
ANO6	196527	genome.wustl.edu	37	12	45751137	45751137	+	Missense_Mutation	SNP	C	C	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	12	45751137	45751137	C	T	SNP	ANO6	ENST00000425752	human	ensembl	70_37	+1	known	missense	c.928	p.L310F	0.011	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO6	HGNC
ARSJ	79642	genome.wustl.edu	37	4	114823522	114823522	+	Missense_Mutation	SNP	C	C	G			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	4	114823522	114823522	C	G	SNP	ARSJ	ENST00000315366	human	ensembl	70_37	-1	known	missense	c.1708	p.E570Q	0.000	NULL	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSJ	HGNC
C16orf90	646174	genome.wustl.edu	37	16	3544593	3544593	+	Missense_Mutation	SNP	C	C	A			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	16	3544593	3544593	C	A	SNP	C16orf90	ENST00000437192	human	ensembl	70_37	-1	known	missense	c.331	p.G111C	0.978	NULL	NULL	-	no_errors	C16orf90	HGNC
CAPRIN1	4076	genome.wustl.edu	37	11	34074229	34074229	+	RNA	SNP	C	C	G			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	11	34074229	34074229	C	G	SNP	CAPRIN1	ENST00000526477	human	ensembl	70_37	+1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	CAPRIN1	HGNC
CCT5	22948	genome.wustl.edu	37	5	10264873	10264873	+	Missense_Mutation	SNP	A	A	G			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	5	10264873	10264873	A	G	SNP	CCT5	ENST00000280326	human	ensembl	70_37	+1	known	missense	c.1604	p.K535R	1.000	superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_epsi	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_epsi	-	no_errors	CCT5	HGNC
CMYA5	202333	genome.wustl.edu	37	5	79033976	79033976	+	Missense_Mutation	SNP	A	A	G			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	5	79033976	79033976	A	G	SNP	CMYA5	ENST00000446378	human	ensembl	70_37	+1	known	missense	c.9388	p.T3130A	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC
CNTRL	11064	genome.wustl.edu	37	9	123877440	123877440	+	Missense_Mutation	SNP	G	G	A			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	9	123877440	123877440	G	A	SNP	CNTRL	ENST00000238341	human	ensembl	70_37	+1	known	missense	c.1417	p.E473K	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNTRL	HGNC
COL12A1	1303	genome.wustl.edu	37	6	75843579	75843579	+	Missense_Mutation	SNP	C	C	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	6	75843579	75843579	C	T	SNP	COL12A1	ENST00000322507	human	ensembl	70_37	-1	known	missense	c.5659	p.E1887K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC
ENSG00000233539	0	genome.wustl.edu	37	7	46728852	46728852	+	RNA	SNP	G	G	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	7	46728852	46728852	G	T	SNP	ENSG00000233539	ENST00000469937	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC011294.3	Clone_based_vega_gene
ENSG00000261096	0	genome.wustl.edu	37	2	232677017	232677018	+	RNA	INS	-	-	A			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	2	232677017	232677018	-	A	INS	ENSG00000261096	ENST00000563949	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.014:0.017	-	-	-	no_errors	RP11-690I21.2	Clone_based_vega_gene
EPN3	55040	genome.wustl.edu	37	17	48618234	48618234	+	Missense_Mutation	SNP	G	G	A			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	17	48618234	48618234	G	A	SNP	EPN3	ENST00000537145	human	ensembl	70_37	+1	known	missense	c.1144	p.V382I	0.000	NULL	pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN3	HGNC
FOLH1	2346	genome.wustl.edu	37	11	49204790	49204790	+	Silent	SNP	A	A	G			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	11	49204790	49204790	A	G	SNP	FOLH1	ENST00000256999	human	ensembl	70_37	-1	known	silent	c.831	p.Y277	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC
GAS2	2620	genome.wustl.edu	37	11	22759271	22759271	+	Missense_Mutation	SNP	G	G	C			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	11	22759271	22759271	G	C	SNP	GAS2	ENST00000278187	human	ensembl	70_37	+1	known	missense	c.430	p.E144Q	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2	HGNC
GHR	2690	genome.wustl.edu	37	5	42719441	42719441	+	Missense_Mutation	SNP	C	C	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	5	42719441	42719441	C	T	SNP	GHR	ENST00000230882	human	ensembl	70_37	+1	known	missense	c.1832	p.A611V	0.972	NULL	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	GHR	HGNC
GLTSCR1	29998	genome.wustl.edu	37	19	48204833	48204833	+	Missense_Mutation	SNP	G	G	A			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	19	48204833	48204833	G	A	SNP	GLTSCR1	ENST00000396720	human	ensembl	70_37	+1	known	missense	c.3844	p.D1282N	0.942	NULL	NULL	-	no_errors	GLTSCR1	HGNC
HK2	3099	genome.wustl.edu	37	2	75101407	75101407	+	Missense_Mutation	SNP	G	G	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	2	75101407	75101407	G	T	SNP	HK2	ENST00000290573	human	ensembl	70_37	+1	known	missense	c.706	p.A236S	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK2	HGNC
IKBKB	3551	genome.wustl.edu	37	8	42174278	42174278	+	Silent	SNP	G	G	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	8	42174278	42174278	G	T	SNP	IKBKB	ENST00000520810	human	ensembl	70_37	+1	known	silent	c.981	p.V327	0.332	superfamily_Kinase-like_dom,pfscan_Ubiquitin_supergroup	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC
KIF2C	11004	genome.wustl.edu	37	1	45216175	45216175	+	Silent	SNP	G	G	A			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	1	45216175	45216175	G	A	SNP	KIF2C	ENST00000372224	human	ensembl	70_37	+1	known	silent	c.378	p.E126	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2C	HGNC
MMP24	10893	genome.wustl.edu	37	20	33855066	33855066	+	Silent	SNP	G	G	A			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	20	33855066	33855066	G	A	SNP	MMP24	ENST00000246186	human	ensembl	70_37	+1	known	silent	c.1038	p.R346	1.000	pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP24	HGNC
MUC16	94025	genome.wustl.edu	37	19	9068304	9068304	+	Missense_Mutation	SNP	G	G	A			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	19	9068304	9068304	G	A	SNP	MUC16	ENST00000397910	human	ensembl	70_37	-1	known	missense	c.19142	p.S6381L	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC
NBEA	26960	genome.wustl.edu	37	13	36220012	36220012	+	Nonsense_Mutation	SNP	G	G	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	13	36220012	36220012	G	T	SNP	NBEA	ENST00000379922	human	ensembl	70_37	+1	known	nonsense	c.295	p.E99*	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC
NDE1	54820	genome.wustl.edu	37	16	15790663	15790663	+	Missense_Mutation	SNP	G	G	C			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	16	15790663	15790663	G	C	SNP	NDE1	ENST00000396353	human	ensembl	70_37	+1	known	missense	c.893	p.R298T	1.000	pfam_NUDE_C	pfam_NUDE_C	-	no_errors	NDE1	HGNC
NOTCH3	4854	genome.wustl.edu	37	19	15280981	15280981	+	Silent	SNP	C	C	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	19	15280981	15280981	C	T	SNP	NOTCH3	ENST00000263388	human	ensembl	70_37	-1	known	silent	c.5115	p.K1705	1.000	pirsf_Notch	pfam_EG-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC
NQO1	1728	genome.wustl.edu	37	16	69745052	69745052	+	Missense_Mutation	SNP	C	C	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	16	69745052	69745052	C	T	SNP	NQO1	ENST00000320623	human	ensembl	70_37	-1	known	missense	c.652	p.E218K	1.000	NULL	pfam_Flavodoxin_fold,pfam_FMN_red	-	no_errors	NQO1	HGNC
OTOA	146183	genome.wustl.edu	37	16	21690532	21690532	+	Missense_Mutation	SNP	G	G	C			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	16	21690532	21690532	G	C	SNP	OTOA	ENST00000286149	human	ensembl	70_37	+1	known	missense	c.179	p.S60T	1.000	NULL	NULL	-	no_errors	OTOA	HGNC
PER3	8863	genome.wustl.edu	37	1	7895971	7895971	+	Nonsense_Mutation	SNP	G	G	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	1	7895971	7895971	G	T	SNP	PER3	ENST00000361923	human	ensembl	70_37	+1	known	nonsense	c.3337	p.E1113*	0.287	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC
PIN1P1	5301	genome.wustl.edu	37	1	70385093	70385093	+	RNA	SNP	C	C	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	1	70385093	70385093	C	T	SNP	PIN1P1	ENST00000412108	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	PIN1P1	HGNC
PLEKHA1	59338	genome.wustl.edu	37	10	124190642	124190643	+	RNA	INS	-	-	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	10	124190642	124190643	-	T	INS	PLEKHA1	ENST00000479786	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.026:0.007	-	-	-	no_errors	PLEKHA1	HGNC
SH3D19	152503	genome.wustl.edu	37	4	152054300	152054300	+	Missense_Mutation	SNP	C	C	G			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	4	152054300	152054300	C	G	SNP	SH3D19	ENST00000304527	human	ensembl	70_37	-1	known	missense	c.1804	p.E602Q	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain	-	no_errors	SH3D19	HGNC
SIM1	6492	genome.wustl.edu	37	6	100896461	100896461	+	Missense_Mutation	SNP	C	C	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	6	100896461	100896461	C	T	SNP	SIM1	ENST00000262901	human	ensembl	70_37	-1	known	missense	c.637	p.V213M	1.000	NULL	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_dom,superfamily_HLH_dom,smart_HLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_dom	-	no_errors	SIM1	HGNC
SLC5A11	115584	genome.wustl.edu	37	16	24922824	24922824	+	Silent	SNP	C	C	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	16	24922824	24922824	C	T	SNP	SLC5A11	ENST00000347898	human	ensembl	70_37	+1	known	silent	c.1998	p.C666	0.006	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A11	HGNC
SMAD4	4089	genome.wustl.edu	37	18	48603032	48603032	+	Nonsense_Mutation	SNP	C	C	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	18	48603032	48603032	C	T	SNP	SMAD4	ENST00000342988	human	ensembl	70_37	+1	known	nonsense	c.1333	p.R445*	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC
SPATA31A1	647060	genome.wustl.edu	37	9	39361204	39361204	+	Missense_Mutation	SNP	G	G	A			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	9	39361204	39361204	G	A	SNP	SPATA31A1	ENST00000377647	human	ensembl	70_37	+1	known	missense	c.3442	p.V1148I	0.000	NULL	NULL	-	no_errors	SPATA31A1	HGNC
TOMM7	54543	genome.wustl.edu	37	7	22857031	22857031	+	Frame_Shift_Del	DEL	T	T	-			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	7	22857031	22857031	T	-	DEL	TOMM7	ENST00000372879	human	ensembl	70_37	-1	putative	frame_shift_del	c.289	p.T97fs	0.100	NULL	pfam_Tom7	-	no_errors	TOMM7	HGNC
TRIOBP	11078	genome.wustl.edu	37	22	38130892	38130892	+	Missense_Mutation	SNP	G	G	C			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	22	38130892	38130892	G	C	SNP	TRIOBP	ENST00000406386	human	ensembl	70_37	+1	known	missense	c.4549	p.E1517Q	0.001	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC
TUBA8	51807	genome.wustl.edu	37	22	18609310	18609310	+	Silent	SNP	C	C	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	22	18609310	18609310	C	T	SNP	TUBA8	ENST00000330423	human	ensembl	70_37	+1	known	silent	c.565	p.L189	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA8	HGNC
UBR4	23352	genome.wustl.edu	37	1	19439131	19439131	+	Silent	SNP	C	C	T			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	1	19439131	19439131	C	T	SNP	UBR4	ENST00000375267	human	ensembl	70_37	-1	known	silent	c.11688	p.L3896	0.998	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC
ZNF2	7549	genome.wustl.edu	37	2	95847189	95847189	+	Missense_Mutation	SNP	G	G	A			TCGA-EX-A3L1-01A-11D-A21Q-09	TCGA-EX-A3L1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4	b42c3a13-affb-44db-b466-d88d9f3a5630	2	95847189	95847189	G	A	SNP	ZNF2	ENST00000340539	human	ensembl	70_37	+1	known	missense	c.616	p.E206K	0.733	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF2	HGNC
