Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
NFE2L3	9603	hgsc.bcm.edu	36	7	26191147	26191147	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
HECW1	23072	hgsc.bcm.edu	36	7	43558455	43558455	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
AKAP9	10142	hgsc.bcm.edu	36	7	91549888	91549888	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
SMO	54498	hgsc.bcm.edu	36	7	128633390	128633390	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
MLL3	58508	hgsc.bcm.edu	36	7	151510057	151510057	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
SNX5	27131	hgsc.bcm.edu	36	20	17877566	17877566	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
EMILIN3	90187	hgsc.bcm.edu	36	20	39424558	39424558	+	Silent	SNP	A	A	G	rs41307177	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
EMILIN3	90187	hgsc.bcm.edu	36	20	39424585	39424585	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
SALL4	57167	hgsc.bcm.edu	36	20	49840392	49840392	+	Silent	SNP	G	G	A	rs13043248	byCluster;byFrequency;byHapMap	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CLTCL1	8218	hgsc.bcm.edu	36	22	17588966	17588966	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
NF2	4771	hgsc.bcm.edu	36	22	28365156	28365156	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CYTH4	27128	hgsc.bcm.edu	36	22	36020695	36020695	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
C14orf37	145407	hgsc.bcm.edu	36	14	57674495	57674495	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
C14orf39	317761	hgsc.bcm.edu	36	14	59973407	59973407	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PAPLN	89932	hgsc.bcm.edu	36	14	72799250	72799250	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
TLE6	79816	hgsc.bcm.edu	36	19	2929266	2929266	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
RFX1	5989	hgsc.bcm.edu	36	19	13937266	13937266	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
HAPLN4	404037	hgsc.bcm.edu	36	19	19233262	19233262	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
C19orf2	8725	hgsc.bcm.edu	36	19	35169155	35169155	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
TSHZ3	57616	hgsc.bcm.edu	36	19	36460241	36460241	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
ZNF568	374900	hgsc.bcm.edu	36	19	42133392	42133392	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
RYR1	6261	hgsc.bcm.edu	36	19	43668457	43668457	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
ZNF160	90338	hgsc.bcm.edu	36	19	58263275	58263275	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
DLC1	10395	hgsc.bcm.edu	36	8	13004677	13004677	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
OPRK1	4986	hgsc.bcm.edu	36	8	54304493	54304493	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PREX2	80243	hgsc.bcm.edu	36	8	69190579	69190579	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CSMD3	114788	hgsc.bcm.edu	36	8	114057365	114057365	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CHD5	450091	hgsc.bcm.edu	36	1	6103768	6103768	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CAMTA1	23261	hgsc.bcm.edu	36	1	7715180	7715180	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
DFFA	1676	hgsc.bcm.edu	36	1	10449854	10449854	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
MPL	4352	hgsc.bcm.edu	36	1	43577747	43577747	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
BSND	7809	hgsc.bcm.edu	36	1	55245492	55245492	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
MIER1	57708	hgsc.bcm.edu	36	1	67184457	67184457	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
USP33	23032	hgsc.bcm.edu	36	1	77952921	77952921	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
KCNA2	3737	hgsc.bcm.edu	36	1	110948298	110948298	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
FLG	2312	hgsc.bcm.edu	36	1	150552421	150552421	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
FLG2	388698	hgsc.bcm.edu	36	1	150590681	150590681	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
FLG2	388698	hgsc.bcm.edu	36	1	150595524	150595524	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
SHC1	6464	hgsc.bcm.edu	36	1	153209366	153209366	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
IFI16	3428	hgsc.bcm.edu	36	1	157290087	157290087	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CAMSAP1L1	23271	hgsc.bcm.edu	36	1	199084782	199084782	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PTPN14	5784	hgsc.bcm.edu	36	1	212616254	212616254	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
RAB4A	5867	hgsc.bcm.edu	36	1	227499990	227499990	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
C1orf101	257044	hgsc.bcm.edu	36	1	242847513	242847513	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
OR51T1	401665	hgsc.bcm.edu	36	11	4860129	4860129	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
STK33	65975	hgsc.bcm.edu	36	11	8391760	8391760	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
IGSF22	283284	hgsc.bcm.edu	36	11	18692096	18692096	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
OR5D16	390144	hgsc.bcm.edu	36	11	55363156	55363156	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
AHNAK	79026	hgsc.bcm.edu	36	11	62057006	62057006	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CATSPER1	117144	hgsc.bcm.edu	36	11	65549931	65549931	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
TSKU	25987	hgsc.bcm.edu	36	11	76184774	76184774	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
INTS4	92105	hgsc.bcm.edu	36	11	77317236	77317236	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
SYTL2	54843	hgsc.bcm.edu	36	11	85114579	85114579	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
MMP27	64066	hgsc.bcm.edu	36	11	102078698	102078698	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
DYNC2H1	79659	hgsc.bcm.edu	36	11	102679121	102679121	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CASP1	834	hgsc.bcm.edu	36	11	104405080	104405080	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
ATM	472	hgsc.bcm.edu	36	11	107721757	107721757	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
NQO2	4835	hgsc.bcm.edu	36	6	2955338	2955338	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
AIF1	199	hgsc.bcm.edu	36	6	31692073	31692073	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
FOXP4	116113	hgsc.bcm.edu	36	6	41641583	41641583	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
TCTE1	202500	hgsc.bcm.edu	36	6	44362063	44362063	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PHF3	23469	hgsc.bcm.edu	36	6	64474069	64474069	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
GRIK2	2901	hgsc.bcm.edu	36	6	102589992	102589992	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
RSPH4A	345895	hgsc.bcm.edu	36	6	117058315	117058315	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PTPRK	5796	hgsc.bcm.edu	36	6	128368056	128368056	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
FNDC1	84624	hgsc.bcm.edu	36	6	159574150	159574150	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
TP53	7157	hgsc.bcm.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T	rs11540652	byHapMap	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
TP53	7157	hgsc.bcm.edu	36	17	7519007	7519007	+	Silent	SNP	G	G	T	rs55764374	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
EVPL	2125	hgsc.bcm.edu	36	17	71516840	71516840	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
RUNX1	861	hgsc.bcm.edu	36	21	35153655	35153655	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
TTC3	7267	hgsc.bcm.edu	36	21	37447243	37447243	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
NLRC3	197358	hgsc.bcm.edu	36	16	3554281	3554281	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CREBBP	1387	hgsc.bcm.edu	36	16	3726079	3726079	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PRKCB	5579	hgsc.bcm.edu	36	16	24011736	24011736	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
SEZ6L2	26470	hgsc.bcm.edu	36	16	29792160	29792160	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
SLC9A5	6553	hgsc.bcm.edu	36	16	65857508	65857508	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
ZNF469	84627	hgsc.bcm.edu	36	16	87029459	87029459	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
C16orf3	750	hgsc.bcm.edu	36	16	88623074	88623074	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
OSBPL1A	114876	hgsc.bcm.edu	36	18	20151128	20151128	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CNTN4	152330	hgsc.bcm.edu	36	3	2917482	2917482	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
ITPR1	3708	hgsc.bcm.edu	36	3	4796291	4796291	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
VHL	7428	hgsc.bcm.edu	36	3	10163302	10163302	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
LTF	4057	hgsc.bcm.edu	36	3	46454454	46454454	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
SETD2	29072	hgsc.bcm.edu	36	3	47104651	47104651	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
WDR6	11180	hgsc.bcm.edu	36	3	49026076	49026076	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
SPICE1	0	hgsc.bcm.edu	36	3	114670415	114670415	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
LRP6	4040	hgsc.bcm.edu	36	12	12231293	12231293	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
KIAA0528	9847	hgsc.bcm.edu	36	12	22557561	22557561	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
STK38L	23012	hgsc.bcm.edu	36	12	27353315	27353315	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
FAM186A	121006	hgsc.bcm.edu	36	12	49040816	49040816	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
HOXC11	3227	hgsc.bcm.edu	36	12	52653462	52653462	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PTPRB	5787	hgsc.bcm.edu	36	12	69270172	69270172	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CEP290	80184	hgsc.bcm.edu	36	12	86998293	86998293	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CDK17	0	hgsc.bcm.edu	36	12	95212971	95212971	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
RAD9B	144715	hgsc.bcm.edu	36	12	109444584	109444584	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
TCTN2	79867	hgsc.bcm.edu	36	12	122755125	122755125	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
ATP10A	57194	hgsc.bcm.edu	36	15	23510427	23510427	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PAGE2	203569	hgsc.bcm.edu	36	X	55134517	55134517	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
ATRX	546	hgsc.bcm.edu	36	X	76824148	76824148	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
SLITRK4	139065	hgsc.bcm.edu	36	X	142546169	142546169	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PASD1	139135	hgsc.bcm.edu	36	X	150591512	150591512	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
L1CAM	3897	hgsc.bcm.edu	36	X	152788280	152788280	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
TMLHE	55217	hgsc.bcm.edu	36	X	154407448	154407448	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
GRIA2	2891	hgsc.bcm.edu	36	4	158503485	158503485	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
RAPGEF2	9693	hgsc.bcm.edu	36	4	160484006	160484006	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
ODZ3	55714	hgsc.bcm.edu	36	4	183950463	183950463	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
FAT1	2195	hgsc.bcm.edu	36	4	187866646	187866646	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
TRIML2	205860	hgsc.bcm.edu	36	4	189255285	189255285	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
FAM179A	165186	hgsc.bcm.edu	36	2	29113060	29113060	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
DQX1	165545	hgsc.bcm.edu	36	2	74604673	74604673	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CNNM4	26504	hgsc.bcm.edu	36	2	96791556	96791556	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PDE1A	5136	hgsc.bcm.edu	36	2	182761990	182761990	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
SGOL2	151246	hgsc.bcm.edu	36	2	201145885	201145885	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
FRMPD1	22844	hgsc.bcm.edu	36	9	37727192	37727192	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
TPTE2	93492	hgsc.bcm.edu	36	13	18923364	18923364	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PABPC3	5042	hgsc.bcm.edu	36	13	24569195	24569195	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
NBEA	26960	hgsc.bcm.edu	36	13	35127754	35127754	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
FREM2	341640	hgsc.bcm.edu	36	13	38352504	38352504	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
RB1	5925	hgsc.bcm.edu	36	13	47935914	47935914	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
MLNR	2862	hgsc.bcm.edu	36	13	48692958	48692958	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
SLITRK5	26050	hgsc.bcm.edu	36	13	87126217	87126217	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
NALCN	259232	hgsc.bcm.edu	36	13	100642370	100642370	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PTPLA	9200	hgsc.bcm.edu	36	10	17676300	17676300	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
NSUN6	221078	hgsc.bcm.edu	36	10	18977515	18977515	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
TSPAN14	81619	hgsc.bcm.edu	36	10	82259142	82259142	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PTEN	5728	hgsc.bcm.edu	36	10	89707608	89707608	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CUTC	51076	hgsc.bcm.edu	36	10	101492937	101492937	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
HSPA12A	259217	hgsc.bcm.edu	36	10	118431341	118431341	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
DOCK1	1793	hgsc.bcm.edu	36	10	128815974	128815974	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
KIAA0947	23379	hgsc.bcm.edu	36	5	5513921	5513921	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PIK3R1	5295	hgsc.bcm.edu	36	5	67625374	67625374	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
FAM81B	153643	hgsc.bcm.edu	36	5	94811666	94811666	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PCDHA12	56137	hgsc.bcm.edu	36	5	140237017	140237017	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PCDHGA10	56106	hgsc.bcm.edu	36	5	140774420	140774420	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
FLT4	2324	hgsc.bcm.edu	36	5	179978437	179978437	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
RPTN	126638	hgsc.bcm.edu	36	1	150395690	150395725	+	In_Frame_Del	DEL	TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA	TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA	-	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA	TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
PRKRA	8575	hgsc.bcm.edu	36	2	179023981	179023982	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
ATR	390502	hgsc.bcm.edu	36	3	143757430	143757430	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
CRIPAK	285464	hgsc.bcm.edu	36	4	1378622	1378623	+	Frame_Shift_Ins	INS	-	-	CA	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
APC	324	hgsc.bcm.edu	36	5	112203671	112203671	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
KRTAP5-1	387264	hgsc.bcm.edu	36	11	1562697	1562726	+	In_Frame_Del	DEL	CCACAGCCACCCTTGGATCCCCCACAAGAG	CCACAGCCACCCTTGGATCCCCCACAAGAG	-	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	CCACAGCCACCCTTGGATCCCCCACAAGAG	CCACAGCCACCCTTGGATCCCCCACAAGAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
ART5	116969	hgsc.bcm.edu	36	11	3618161	3618162	+	In_Frame_Ins	INS	-	-	TGG	rs3062849	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
NFRKB	4798	hgsc.bcm.edu	36	11	129241053	129241054	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
UACA	55075	hgsc.bcm.edu	36	15	68779030	68779031	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	AT	AT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
KRT222	0	hgsc.bcm.edu	36	17	36071797	36071798	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
KRTAP4-1	85285	hgsc.bcm.edu	36	17	36594322	36594378	+	Frame_Shift_Del	DEL	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	-	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
TGIF1	7050	hgsc.bcm.edu	36	18	3442223	3442223	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
KRTAP10-7	386675	hgsc.bcm.edu	36	21	44845084	44845098	+	Frame_Shift_Del	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel	unknown	TCGA-AH-6549-01A-11D-1826-10	TCGA-AH-6549-10A-01D-1826-10	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	749f8e6a-864e-4ed2-879a-188d0f153e8d	db8dd0b1-6bbd-471c-be21-c24fd1f008e2
