Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
MLL2	8085	hgsc.bcm.edu	37	12	49441815	49441816	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	55.0	17.0	67.0	0.0	0.309	.	.	.	none	.	MLL2	1173	.	NM_003482	exon14	c.4169_4170insG	p.A1390fs	.	.	PASS	Pindel,Atlas-Indel
KCNA6	3742	hgsc.bcm.edu	37	12	4919954	4919957	+	Frame_Shift_Del	DEL	CTCA	CTCA	-	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	CTCA	CTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	121.0	36.0	149.0	0.0	0.298	.	.	.	none	.	KCNA6	122	.	NM_002235	exon1	c.746_749del	p.249_250del	.	.	PASS	Pindel,Atlas-Indel
MCM3AP	8888	hgsc.bcm.edu	37	21	47704722	47704723	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	39.0	15.0	49.0	0.0	0.385	.	.	.	none	.	MCM3AP	146	.	NM_003906	exon1	c.479_480insG	p.A160fs	.	.	PASS	Pindel,Atlas-Indel
TTN	7273	hgsc.bcm.edu	37	2	179428230	179428233	+	Frame_Shift_Del	DEL	TCTG	TCTG	-	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	TCTG	TCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	108.0	31.0	157.0	0.0	0.287	.	.	.	none	.	TTN	18412	.	NM_001267550	exon326	c.82627_82630del	p.27543_27544del	.	.	PASS	Pindel,Atlas-Indel
ASXL1	171023	hgsc.bcm.edu	37	20	31023636	31023636	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	136.0	32.0	121.0	0.0	0.235	.	.	.	none	.	ASXL1	1114	.	NM_015338	exon12	c.3120delT	p.S1040fs	.	.	PASS	Pindel,Atlas-Indel
RAI1	10743	hgsc.bcm.edu	37	17	17699094	17699095	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	126.0	41.0	125.0	0.0	0.325	.	.	.	none	.	RAI1	121	.	NM_030665	exon3	c.2831_2832del	p.944_944del	.	.	PASS	Pindel,Atlas-Indel
HIST1H2AC	8334	hgsc.bcm.edu	37	6	26124573	26124585	+	Frame_Shift_Del	DEL	GCAACTACGCAGA	GCAACTACGCAGA	-	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	GCAACTACGCAGA	GCAACTACGCAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	196.0	35.0	168.0	0.0	0.178571	0	.	.	none	.	HIST1H2AC	29	.	NM_003512	exon1	c.112_124del	p.38_42del	.	.	PASS	Atlas-Indel
PAX5	5079	hgsc.bcm.edu	37	9	36923482	36923482	+	Splice_Site	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	29.0	15.0	27.0	0.0	0.517241	0	.	.	none	.	PAX5	250	.	NM_016734	exon8	c.781-1G>A	.	TGTGGTCTGAAAG	.	PASS	Atlas-SNP
CCT6A	908	hgsc.bcm.edu	37	7	56129454	56129454	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	295.0	66.0	303.0	0.0	0.223729	0	.	.	none	.	CCT6A	44	.	NM_001762	exon12	c.C1362G	p.N454K	TCAGAACTCTGGT	.	PASS	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	37	3	78667095	78667095	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	192.0	55.0	178.0	1.0	0.286458	0.00561798	.	.	none	ROBO1_ENST00000495273,NS,carcinoma,-1,4	ROBO1	833	4	NM_002941	exon27	c.G3972A	p.T1324T	CGCATCCGTATCC	.	scavenged	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49415922	49415922	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	47.0	16.0	76.0	0.0	0.340426	0	.	.	none	.	MLL2	1173	.	NM_003482	exon53	c.T16425A	p.H5475Q	ACAGGAATGGTTA	.	PASS	Atlas-SNP
AMOT	154796	hgsc.bcm.edu	37	X	112033851	112033851	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	191.0	116.0	424.0	0.0	0.60733	0	.	.	none	.	AMOT	204	.	NM_001113490	exon7	c.C2086G	p.L696V	CATCCAGAGCAAA	.	PASS	Atlas-SNP
CNOT3	4849	hgsc.bcm.edu	37	19	54646891	54646891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	65.0	23.0	75.0	0.0	0.353846	0	.	.	none	.	CNOT3	133	.	NM_014516	exon3	c.G62T	p.G21V	CCGAGGGCGTGGA	.	PASS	Atlas-SNP
PROX1	5629	hgsc.bcm.edu	37	1	214178516	214178516	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	98.0	31.0	122.0	0.0	0.316327	0	.	.	none	.	PROX1	124	.	NM_001270616	exon3	c.A1734C	p.E578D	GCAGGAAGGATTG	.	PASS	Atlas-SNP
SLAMF6	114836	hgsc.bcm.edu	37	1	160461146	160461146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	95.0	36.0	84.0	0.0	0.378947	0	.	.	none	.	SLAMF6	46	.	NM_052931	exon3	c.A415G	p.S139G	GCTGACTGTGATT	.	PASS	Atlas-SNP
PLCXD3	345557	hgsc.bcm.edu	37	5	41381956	41381956	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	144.0	54.0	208.0	0.0	0.375	0	.	.	none	.	PLCXD3	86	.	NM_001005473	exon2	c.A784C	p.S262R	GGCCACTTGCCAC	.	PASS	Atlas-SNP
ZNF443	10224	hgsc.bcm.edu	37	19	12542646	12542646	+	Missense_Mutation	SNP	C	C	T	rs199587788	alternate_allele	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	200.0	90.0	244.0	0.0	0.45	0	.	.	alt	ZNF443,caecum,carcinoma,0,1	ZNF443	63	1	NM_005815	exon4	c.G340A	p.G114S	AATGACCCATGAC	.	PASS	Atlas-SNP
GALNT1	2589	hgsc.bcm.edu	37	18	33283603	33283603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	100.0	14.0	49.0	0.0	0.14	0	.	.	none	.	GALNT1	53	.	NM_020474	exon10	c.C1529T	p.P510L	ATGACCCAGTGGT	.	PASS	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	37	15	88727487	88727487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	99.0	21.0	52.0	0.0	0.212121	0	.	.	none	.	NTRK3	587	.	NM_001243101	exon4	c.G292A	p.D98N	CCATGTCCACGGC	.	PASS	Atlas-SNP
HUNK	30811	hgsc.bcm.edu	37	21	33371236	33371236	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	100.0	33.0	121.0	0.0	0.33	0	.	.	none	.	HUNK	74	.	NM_014586	exon11	c.C1884T	p.N628N	TAAGAACAGCCCC	.	PASS	Atlas-SNP
EXT1	2131	hgsc.bcm.edu	37	8	118812014	118812014	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	188.0	26.0	102.0	0.0	0.138298	0	.	.	none	.	EXT1	98	.	NM_000127	exon11	c.C2178T	p.P726P	GAGGACGGGGTCG	.	PASS	Atlas-SNP
TMPRSS12	283471	hgsc.bcm.edu	37	12	51237782	51237782	+	Silent	SNP	G	G	A	rs374807523		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	90.0	40.0	111.0	0.0	0.444444	0	.	.	weak	.	TMPRSS12	33	.	NM_182559	exon2	c.G345A	p.R115R	AGAGAGGTGGGTC	.	PASS	Atlas-SNP
COL5A2	1290	hgsc.bcm.edu	37	2	189927788	189927788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	68.0	8.0	81.0	0.0	0.117647	0	.	.	none	.	COL5A2	230	.	NM_000393	exon28	c.G1871A	p.G624D	GGGTCACCCTAAA	.	PASS	Atlas-SNP
NRXN3	9369	hgsc.bcm.edu	37	14	79175759	79175759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	163.0	46.0	118.0	0.0	0.282209	0	.	.	none	.	NRXN3	342	.	NM_004796	exon4	c.A302G	p.D101G	CCTTTGACTTCCG	.	PASS	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126408517	126408517	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	36.0	10.0	69.0	0.0	0.277778	0	.	.	none	.	FAT4	1752	.	NM_024582	exon16	c.A12834G	p.V4278V	CAAAGTATATTTT	.	PASS	Atlas-SNP
OR5H1	26341	hgsc.bcm.edu	37	3	97852237	97852237	+	Silent	SNP	A	A	G	rs150614363		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	237.0	35.0	257.0	0.0	0.147679	0	A|1.000;G|0.000	0.000	weak	.	OR5H1	71	.	NM_001005338	exon1	c.A696G	p.K232K	TGATAAAGGTGTA	.	PASS	Atlas-SNP
FILIP1	27145	hgsc.bcm.edu	37	6	76018589	76018589	+	Missense_Mutation	SNP	G	G	A	rs369386052		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	174.0	57.0	149.0	0.0	0.327586	0	.	.	weak	FILIP1,right_upper_lobe,carcinoma,0,1	FILIP1	173	1	NM_015687	exon6	c.C3460T	p.R1154W	TAGGCCGCTGGGA	.	PASS	Atlas-SNP
CDKL2	8999	hgsc.bcm.edu	37	4	76507055	76507055	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	91.0	40.0	94.0	0.0	0.43956	0	.	.	none	.	CDKL2	58	.	NM_003948	exon11	c.A1470C	p.E490D	CTGGTGTTCCATT	.	PASS	Atlas-SNP
TMSB4X	7114	hgsc.bcm.edu	37	X	12994407	12994407	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	212.0	141.0	366.0	0.0	0.665094	0	.	.	none	.	TMSB4X	3	.	NM_021109	exon2	c.G27C	p.E9D	GGCTGAGATCGAG	.	PASS	Atlas-SNP
MYADM	91663	hgsc.bcm.edu	37	19	54377236	54377236	+	Silent	SNP	C	C	T	rs376434685		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	84.0	36.0	72.0	0.0	0.428571	0	.	.	weak	.	MYADM	39	.	NM_138373	exon3	c.C453T	p.Y151Y	GGCTTACGCCACC	.	PASS	Atlas-SNP
OR5T1	390155	hgsc.bcm.edu	37	11	56043714	56043714	+	Silent	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	315.0	115.0	402.0	0.0	0.365079	0	.	.	none	OR5T1,NS,carcinoma,0,1	OR5T1	95	1	NM_001004745	exon1	c.T600G	p.S200S	TATTTCTTGTTCT	.	PASS	Atlas-SNP
PADI6	353238	hgsc.bcm.edu	37	1	17701957	17701957	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	60.0	4.0	32.0	0.0	0.0666667	0	.	.	none	.	PADI6	51	.	NM_207421	exon3	c.C330T	p.A110A	GGATGCCCCCGTG	.	PASS	Atlas-SNP
KLF15	28999	hgsc.bcm.edu	37	3	126070934	126070934	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	389.0	96.0	331.0	0.0	0.246787	0	.	.	none	.	KLF15	40	.	NM_014079	exon2	c.T832G	p.F278V	GCACAAACTTGGA	.	PASS	Atlas-SNP
PARD3B	117583	hgsc.bcm.edu	37	2	206110509	206110509	+	Silent	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	169.0	61.0	234.0	0.0	0.360947	0	.	.	none	.	PARD3B	314	.	NM_205863	exon16	c.T2148C	p.D716D	GCCAGATGAAAGC	.	PASS	Atlas-SNP
TEX10	54881	hgsc.bcm.edu	37	9	103090132	103090132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	125.0	51.0	162.0	0.0	0.408	0	.	.	none	.	TEX10	99	.	NM_001161584	exon8	c.G1747A	p.A583T	CTGCAGCGGTATG	.	PASS	Atlas-SNP
AADACL3	126767	hgsc.bcm.edu	37	1	12785877	12785877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	137.0	52.0	154.0	0.0	0.379562	0	.	.	none	.	AADACL3	84	.	NM_001103170	exon4	c.C967T	p.L323F	GGAGTGCTCAGGA	.	PASS	Atlas-SNP
UNC5B	219699	hgsc.bcm.edu	37	10	73053316	73053316	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	45.0	23.0	49.0	0.0	0.511111	0	.	.	none	.	UNC5B	123	.	NM_170744	exon12	c.C1927T	p.Q643X	GCCCACCAGGGCC	.	PASS	Atlas-SNP
UGT1A3	54659	hgsc.bcm.edu	37	2	234638243	234638243	+	Silent	SNP	C	C	T	rs375083511		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	258.0	105.0	277.0	1.0	0.406977	0.00361011	.	.	weak	.	UGT1A3	91	.	NM_019093	exon1	c.C471T	p.C157C	CCTCTGCGCGGCA	.	PASS	Atlas-SNP
RIMBP2	23504	hgsc.bcm.edu	37	12	130926675	130926675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	127.0	52.0	157.0	0.0	0.409449	0	.	.	none	RIMBP2,colon,carcinoma,+2,1	RIMBP2	220	1	NM_015347	exon8	c.G1171A	p.V391M	CCACCACCACGTC	.	PASS	Atlas-SNP
TRIM6-TRIM34	445372	hgsc.bcm.edu	37	11	5664047	5664047	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	97.0	4.0	85.0	0.0	0.0412371	0	.	.	none	.	TRIM6-TRIM34	68	.	NM_001003819	exon13	c.A1937G	p.E646G	TTTCAGAACTGAC	.	PASS	Atlas-SNP
CHD4	1108	hgsc.bcm.edu	37	12	6702746	6702746	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	77.0	25.0	88.0	0.0	0.324675	0	.	.	none	.	CHD4	539	.	NM_001273	exon16	c.C2350G	p.L784V	TAGAAAGAGGGGC	.	PASS	Atlas-SNP
SLC22A23	63027	hgsc.bcm.edu	37	6	3273638	3273638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	92.0	27.0	48.0	0.0	0.293478	0	.	.	none	SLC22A23_ENST00000406686,colon,carcinoma,-1,2	SLC22A23	89	2	NM_015482	exon10	c.G1712A	p.G571E	CCCAGCCCGCCAC	.	PASS	Atlas-SNP
CCR3	1232	hgsc.bcm.edu	37	3	46307515	46307515	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	142.0	45.0	122.0	0.0	0.316901	0	.	.	none	.	CCR3	52	.	NM_178328	exon3	c.T929G	p.I310S	AGGTGATCGCCTA	.	PASS	Atlas-SNP
CCDC102B	79839	hgsc.bcm.edu	37	18	66721311	66721311	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	39.0	15.0	28.0	0.0	0.384615	0	.	.	none	CCDC102B,NS,carcinoma,0,1	CCDC102B	92	1	NM_001093729	exon10	c.G1479A	p.L493L	GTCTCTGGATGAA	.	PASS	Atlas-SNP
MKRN2	23609	hgsc.bcm.edu	37	3	12610409	12610409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	172.0	42.0	128.0	0.0	0.244186	0	.	.	none	.	MKRN2	32	.	NM_014160	exon2	c.A62G	p.Q21R	GAAGTCAGTGCCT	.	PASS	Atlas-SNP
PCDHB10	56126	hgsc.bcm.edu	37	5	140574381	140574381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	128.0	64.0	84.0	0.0	0.5	0	.	.	none	.	PCDHB10	177	.	NM_018930	exon1	c.G2256T	p.Q752H	CTACCAGTATGAG	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093448	1093448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	62.0	4.0	89.0	2.0	0.0645161	0.0224719	.	.	none	MUC2_ENST00000441003,NS,carcinoma,0,8	MUC2	614	8	NM_002457	exon30	c.C5267A	p.T1756N	CCCCAACCCCGAC	.	scavenged	Atlas-SNP
GABRB1	2560	hgsc.bcm.edu	37	4	47427752	47427752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	74.0	30.0	73.0	0.0	0.405405	0	.	.	none	GABRB1,NS,carcinoma,-1,1	GABRB1	107	1	NM_000812	exon9	c.C1142T	p.S381L	GTGGCTCGGAAGT	.	PASS	Atlas-SNP
GPCPD1	56261	hgsc.bcm.edu	37	20	5559162	5559162	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	154.0	71.0	130.0	0.0	0.461039	0	.	.	none	.	GPCPD1	52	.	NM_019593	exon8	c.T569G	p.L190X	CTTATTAAGGATA	.	PASS	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	37	7	12397001	12397001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	133.0	37.0	134.0	0.0	0.278196	0	.	.	none	.	VWDE	123	.	NM_001135924	exon17	c.A3415C	p.S1139R	AAACACTTGCCCC	.	PASS	Atlas-SNP
DNAI2	64446	hgsc.bcm.edu	37	17	72287205	72287205	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	111.0	53.0	123.0	0.0	0.477477	0	.	.	none	.	DNAI2	102	.	NM_001172810	exon6	c.C657T	p.L219L	TCCACTCGTGACG	.	PASS	Atlas-SNP
NEDD4L	23327	hgsc.bcm.edu	37	18	56057939	56057939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	211.0	44.0	168.0	0.0	0.208531	0	.	.	none	.	NEDD4L	126	.	NM_001144967	exon29	c.C2717T	p.S906L	GGACATCGCGAGT	.	PASS	Atlas-SNP
THRB	7068	hgsc.bcm.edu	37	3	24231565	24231565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	103.0	26.0	88.0	0.0	0.252427	0	.	.	none	.	THRB	52	.	NM_000461	exon4	c.G283A	p.G95R	GGTTACCTTTACA	.	PASS	Atlas-SNP
ANKRD30B	374860	hgsc.bcm.edu	37	18	14787093	14787093	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	478.0	74.0	367.0	0.0	0.154812	0	.	.	none	.	ANKRD30B	237	.	NM_001145029	exon15	c.T1728A	p.D576E	TTGGGATTCTGAG	.	PASS	Atlas-SNP
ANTXR2	118429	hgsc.bcm.edu	37	4	80899206	80899206	+	Silent	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	296.0	105.0	331.0	1.0	0.35473	0.00302115	.	.	none	.	ANTXR2	97	.	NM_001145794	exon15	c.A1302G	p.K434K	TGTGGGTTTGGGT	.	PASS	Atlas-SNP
RAF1	5894	hgsc.bcm.edu	37	3	12627284	12627284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	81.0	16.0	54.0	0.0	0.197531	0	.	.	none	RAF1,NS,lymphoid_neoplasm,0,2	RAF1	66	2	NM_002880	exon14	c.G1432A	p.E478K	AGCCTTCATGGAG	.	PASS	Atlas-SNP
SYCP3	50511	hgsc.bcm.edu	37	12	102131710	102131710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	70.0	4.0	99.0	0.0	0.0571429	0	.	.	none	.	SYCP3	19	.	NM_001177949	exon2	c.G4A	p.V2M	AGGACACCATATT	.	PASS	Atlas-SNP
SDPR	8436	hgsc.bcm.edu	37	2	192700876	192700876	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	128.0	51.0	137.0	0.0	0.398438	0	.	.	none	.	SDPR	67	.	NM_004657	exon2	c.A1051C	p.I351L	CTGCAATTTCCCC	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152284337	152284337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	342.0	121.0	440.0	1.0	0.353801	0.00227273	.	.	none	.	FLG	900	.	NM_002016	exon3	c.C3025G	p.H1009D	CTGCGTGAGGAGT	.	PASS	Atlas-SNP
C12orf52	84934	hgsc.bcm.edu	37	12	113629195	113629195	+	Missense_Mutation	SNP	G	G	A	rs368110690		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	51.0	16.0	50.0	0.0	0.313726	0	.	.	weak	C12orf52,colon,carcinoma,0,1	C12orf52	19	1	NM_032848	exon4	c.G383A	p.R128Q	CCCCGCGGATGGC	.	PASS	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	37	15	54792317	54792317	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	207.0	73.0	225.0	0.0	0.352657	0	.	.	none	.	UNC13C	674	.	NM_001080534	exon19	c.G5101C	p.E1701Q	GAAAACGAAGATG	.	PASS	Atlas-SNP
ARL6IP4	51329	hgsc.bcm.edu	37	12	123465786	123465786	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	139.0	45.0	165.0	0.0	0.323741	0	.	.	none	ARL6IP4,NS,carcinoma,-2,1	ARL6IP4	14	1	NM_018694	exon2	c.A469G	p.R157G	ACCTCGAGGAACT	.	PASS	Atlas-SNP
LRRFIP1	9208	hgsc.bcm.edu	37	2	238688143	238688143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	55.0	24.0	60.0	0.0	0.436364	0	.	.	none	.	LRRFIP1	171	.	NM_001137550	exon24	c.G1891A	p.A631T	ATGAAAGCAAATC	.	PASS	Atlas-SNP
PLEKHM3	389072	hgsc.bcm.edu	37	2	208795754	208795754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	150.0	66.0	177.0	0.0	0.44	0	.	.	none	.	PLEKHM3	101	.	NM_001080475	exon5	c.C1782A	p.H594Q	CTCTGCGTGGTGG	.	PASS	Atlas-SNP
HPDL	84842	hgsc.bcm.edu	37	1	45793485	45793485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	79.0	31.0	90.0	0.0	0.392405	0	.	.	none	.	HPDL	14	.	NM_032756	exon1	c.G665A	p.G222D	AGCCGGGCAGCAT	.	PASS	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	37	1	103449740	103449740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	12.0	6.0	24.0	0.0	0.5	0	.	.	none	COL11A1_ENST00000370096,right_lower_lobe,carcinoma,+1,4	COL11A1	972	4	NM_080629	exon31	c.T2546C	p.L849P	ACTCCAAGTTTTC	.	PASS	Atlas-SNP
PGBD4	161779	hgsc.bcm.edu	37	15	34396115	34396115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	45.0	14.0	24.0	0.0	0.311111	0	.	.	none	.	PGBD4	58	.	NM_152595	exon1	c.C1383A	p.H461Q	TCTACACATTACA	.	PASS	Atlas-SNP
PRDM10	56980	hgsc.bcm.edu	37	11	129801147	129801147	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	140.0	43.0	99.0	0.0	0.307143	0	.	.	none	.	PRDM10	120	.	NM_020228	exon11	c.C1294T	p.L432L	AATGTAGCAAGTC	.	PASS	Atlas-SNP
ZNF461	92283	hgsc.bcm.edu	37	19	37129817	37129817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	94.0	34.0	105.0	0.0	0.361702	0	.	.	none	.	ZNF461	73	.	NM_153257	exon6	c.C1430T	p.A477V	CTAAAGGCCTTAC	.	PASS	Atlas-SNP
ENPP4	22875	hgsc.bcm.edu	37	6	46111076	46111076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	100.0	4.0	97.0	0.0	0.04	0	.	.	none	.	ENPP4	44	.	NM_014936	exon4	c.C1061T	p.P354L	ACGGACCTGCATT	.	PASS	Atlas-SNP
PCDHA13	56136	hgsc.bcm.edu	37	5	140264046	140264046	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	103.0	79.0	73.0	0.0	0.76699	0	.	.	none	.	PCDHA13	213	.	NM_031865	exon1	c.G2193A	p.A731A	GGGCGCGTGCGCG	.	PASS	Atlas-SNP
GRID1	2894	hgsc.bcm.edu	37	10	87615870	87615870	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	138.0	57.0	159.0	0.0	0.413043	0	.	.	none	.	GRID1	204	.	NM_017551	exon7	c.G1029A	p.W343X	GCTATGCCACTTC	.	PASS	Atlas-SNP
ZNF462	58499	hgsc.bcm.edu	37	9	109689973	109689973	+	Silent	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	71.0	28.0	103.0	0.0	0.394366	0	.	.	none	ZNF462,rectum,carcinoma,0,1	ZNF462	322	1	NM_021224	exon3	c.G3780T	p.T1260T	CAAAACGAAACTC	.	PASS	Atlas-SNP
SDHAF2	54949	hgsc.bcm.edu	37	11	61205178	61205178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	171.0	78.0	180.0	0.0	0.45614	0	.	.	none	.	SDHAF2	26	.	NM_017841	exon2	c.C118T	p.P40S	GACAGCCCAACAG	.	PASS	Atlas-SNP
MPP7	143098	hgsc.bcm.edu	37	10	28412969	28412969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	51.0	19.0	62.0	0.0	0.372549	0	.	.	none	.	MPP7	60	.	NM_173496	exon10	c.A606G	p.I202M	AATCTGTATTATT	.	PASS	Atlas-SNP
EPHB3	2049	hgsc.bcm.edu	37	3	184290807	184290807	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	139.0	45.0	99.0	0.0	0.323741	0	.	.	none	.	EPHB3	114	.	NM_004443	exon3	c.G699A	p.S233S	CACCTCGCTGGTC	.	PASS	Atlas-SNP
DMP1	1758	hgsc.bcm.edu	37	4	88580612	88580612	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	175.0	61.0	217.0	0.0	0.348571	0	.	.	none	.	DMP1	72	.	NM_004407	exon5	c.A165C	p.K55N	CAGTAAAGTTAGC	.	PASS	Atlas-SNP
MYO1F	4542	hgsc.bcm.edu	37	19	8601222	8601222	+	Missense_Mutation	SNP	C	C	T	rs199663368	by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	24.0	11.0	34.0	0.0	0.458333	0	C|1.000;T|0.000	0.000	strong	.	MYO1F	128	.	NM_012335	exon19	c.G1957A	p.V653I	GCTGGACGCCCTG	.	PASS	Atlas-SNP
PTPN4	5775	hgsc.bcm.edu	37	2	120725435	120725435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	52.0	19.0	59.0	0.0	0.365385	0	.	.	none	.	PTPN4	89	.	NM_002830	exon26	c.G2581A	p.V861I	ACTGGGGTTCTTA	.	PASS	Atlas-SNP
SERPINH1	871	hgsc.bcm.edu	37	11	75277624	75277624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	12.0	5.0	14.0	0.0	0.416667	0	.	.	none	.	SERPINH1	33	.	NM_001235	exon2	c.C230T	p.S77L	CCTCGTCGCTAGG	.	PASS	Atlas-SNP
TMEM201	199953	hgsc.bcm.edu	37	1	9670573	9670573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	39.0	14.0	53.0	0.0	0.358974	0	.	.	none	.	TMEM201	63	.	NM_001130924	exon9	c.C1475T	p.S492F	ACTTCTCTCTTCT	.	PASS	Atlas-SNP
MLLT4	4301	hgsc.bcm.edu	37	6	168369872	168369872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	84.0	28.0	84.0	0.0	0.333333	0	.	.	none	.	MLLT4	351	.	NM_001207008	exon31	c.C5072T	p.S1691F	AGCGCTCTAAAAG	.	PASS	Atlas-SNP
ENOX1	55068	hgsc.bcm.edu	37	13	43987001	43987001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	64.0	22.0	89.0	0.0	0.34375	0	.	.	none	.	ENOX1	158	.	NM_017993	exon4	c.T50C	p.L17P	TGAGGAAGCTCCT	.	PASS	Atlas-SNP
NKAPL	222698	hgsc.bcm.edu	37	6	28227333	28227333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	80.0	44.0	88.0	0.0	0.55	0	.	.	none	.	NKAPL	72	.	NM_001007531	exon1	c.G184A	p.A62T	GTGGGCGCTCTTT	.	PASS	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	37	5	82834917	82834917	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	103.0	44.0	112.0	0.0	0.427184	0	.	.	none	.	VCAN	498	.	NM_004385	exon8	c.A6095C	p.K2032T	TGCAAAAGTTTTC	.	PASS	Atlas-SNP
NR2E3	10002	hgsc.bcm.edu	37	15	72103180	72103180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	283.0	64.0	260.0	0.0	0.226148	0	.	.	none	.	NR2E3	53	.	NM_016346	exon1	c.G97T	p.G33C	AGATGGGGCCTGG	.	PASS	Atlas-SNP
TTC21A	199223	hgsc.bcm.edu	37	3	39174704	39174704	+	Silent	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	108.0	34.0	112.0	0.0	0.314815	0	.	.	none	.	TTC21A	96	.	NM_145755	exon20	c.C2745A	p.V915V	GGATGTCTTCTCC	.	PASS	Atlas-SNP
PEAR1	375033	hgsc.bcm.edu	37	1	156883019	156883019	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	108.0	50.0	133.0	0.0	0.462963	0	.	.	none	.	PEAR1	118	.	NM_001080471	exon19	c.A2456T	p.N819I	ACTCCAACCCCAG	.	PASS	Atlas-SNP
HCN4	10021	hgsc.bcm.edu	37	15	73616204	73616204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	77.0	6.0	67.0	0.0	0.0779221	0	.	.	none	.	HCN4	150	.	NM_005477	exon8	c.C2230A	p.Q744K	CAATCTGCTGGAT	.	PASS	Atlas-SNP
SLC1A7	6512	hgsc.bcm.edu	37	1	53569135	53569135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	90.0	34.0	96.0	0.0	0.377778	0	.	.	none	.	SLC1A7	65	.	NM_006671	exon5	c.C580A	p.H194N	GCACATGGGAGCC	.	PASS	Atlas-SNP
FBXO15	201456	hgsc.bcm.edu	37	18	71749236	71749236	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	187.0	30.0	106.0	0.0	0.160428	0	.	.	none	.	FBXO15	97	.	NM_001142958	exon9	c.A1189T	p.N397Y	CTCTGTTATTTTT	.	PASS	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	37	20	60885315	60885315	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	47.0	18.0	44.0	0.0	0.382979	0	.	.	none	.	LAMA5	268	.	NM_005560	exon77	c.C10653T	p.P3551P	TGCCAGGGGCCGC	.	PASS	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	37	10	106907486	106907486	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	196.0	86.0	232.0	0.0	0.438776	0	.	.	none	.	SORCS3	282	.	NM_014978	exon9	c.A1414C	p.T472P	TACTTCACTCTGG	.	PASS	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	25.0	2.0	13.0	0.0	0.08	0	.	.	none	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2	128	2	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG	.	scavenged	Atlas-SNP
TFPI2	7980	hgsc.bcm.edu	37	7	93519470	93519470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	83.0	4.0	66.0	0.0	0.0481928	0	.	.	none	.	TFPI2	37	.	NM_006528	exon2	c.G250A	p.D84N	AAGCATCGTCGCA	.	PASS	Atlas-SNP
VPS8	23355	hgsc.bcm.edu	37	3	184616396	184616396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	241.0	64.0	222.0	0.0	0.26556	0	.	.	none	.	VPS8	109	.	NM_001009921	exon23	c.T2048C	p.I683T	CTATGATCTATGT	.	PASS	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	37	7	82997329	82997329	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	143.0	30.0	123.0	0.0	0.20979	0	.	.	none	.	SEMA3E	125	.	NM_012431	exon17	c.A1901C	p.K634T	TCCATCTTAACCA	.	PASS	Atlas-SNP
KCNK18	338567	hgsc.bcm.edu	37	10	118969290	118969290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	75.0	31.0	86.0	0.0	0.413333	0	.	.	none	.	KCNK18	70	.	NM_181840	exon3	c.C635T	p.P212L	CAGGCCCCAAACT	.	PASS	Atlas-SNP
FAM179A	165186	hgsc.bcm.edu	37	2	29225519	29225519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	95.0	35.0	156.0	0.0	0.368421	0	.	.	none	.	FAM179A	106	.	NM_199280	exon5	c.C545T	p.P182L	GCATCCCTACCAC	.	PASS	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	37	7	2983885	2983885	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	292.0	160.0	239.0	0.0	0.547945	0	.	.	none	CARD11,colon,carcinoma,-2,6	CARD11	339	6	NM_032415	exon5	c.G645C	p.K215N	CATGTTCTTCTCC	.	PASS	Atlas-SNP
SLC17A7	57030	hgsc.bcm.edu	37	19	49937049	49937049	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	58.0	3.0	62.0	0.0	0.0517241	0	.	.	none	SLC17A7,caecum,carcinoma,-1,1	SLC17A7	57	1	NM_020309	exon7	c.G801A	p.S267S	CTCCTCCGAGATG	.	scavenged	Atlas-SNP
KRT12	3859	hgsc.bcm.edu	37	17	39019783	39019783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	99.0	36.0	139.0	0.0	0.363636	0	.	.	none	.	KRT12	53	.	NM_000223	exon5	c.G1049A	p.R350H	AAGGCGCGACGCA	.	PASS	Atlas-SNP
BRWD3	254065	hgsc.bcm.edu	37	X	80064532	80064532	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	123.0	83.0	253.0	1.0	0.674797	0.00395257	.	.	none	.	BRWD3	251	.	NM_153252	exon3	c.C100T	p.Q34X	GCTCCTGCACTAG	.	PASS	Atlas-SNP
ZFX	7543	hgsc.bcm.edu	37	X	24229464	24229464	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	147.0	100.0	292.0	0.0	0.680272	0	.	.	none	.	ZFX	61	.	NM_003410	exon10	c.C2389T	p.R797X	ATAATGCGACATC	.	PASS	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	37	16	10274133	10274133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	40.0	16.0	49.0	0.0	0.4	0	.	.	none	GRIN2A,NS,carcinoma,0,1	GRIN2A	366	1	NM_000833	exon3	c.G136A	p.V46M	CTGTCACGTCGTG	.	PASS	Atlas-SNP
DRP2	1821	hgsc.bcm.edu	37	X	100497418	100497418	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	70.0	53.0	190.0	0.0	0.757143	0	.	.	none	.	DRP2	98	.	NM_001939	exon8	c.C933T	p.S311S	GAATTCCCAGGCC	.	PASS	Atlas-SNP
ATP10D	57205	hgsc.bcm.edu	37	4	47593309	47593309	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	71.0	28.0	106.0	0.0	0.394366	0	.	.	none	.	ATP10D	168	.	NM_020453	exon23	c.T4192G	p.L1398V	GGAAACTTATCTC	.	PASS	Atlas-SNP
BARHL2	343472	hgsc.bcm.edu	37	1	91180266	91180266	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	133.0	48.0	159.0	0.0	0.360902	0	.	.	none	BARHL2,NS,carcinoma,+1,1	BARHL2	62	1	NM_020063	exon2	c.C673G	p.P225A	CAGGGGGACTCTC	.	PASS	Atlas-SNP
TNK2	10188	hgsc.bcm.edu	37	3	195605200	195605200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	212.0	47.0	160.0	0.0	0.221698	0	.	.	none	.	TNK2	246	.	NM_001010938	exon9	c.C1369T	p.R457W	GGGCCCGCATGTC	.	PASS	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	37	18	22669489	22669489	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	472.0	70.0	235.0	0.0	0.148305	0	.	.	none	.	ZNF521	269	.	NM_015461	exon7	c.A3846C	p.E1282D	CTTGTCTTCTTGT	.	PASS	Atlas-SNP
MYF6	4618	hgsc.bcm.edu	37	12	81101689	81101689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	58.0	25.0	67.0	0.0	0.431034	0	.	.	none	MYF6,NS,carcinoma,0,1	MYF6	74	1	NM_002469	exon1	c.C191T	p.A64V	TCCTGGCGCCCCC	.	PASS	Atlas-SNP
DLX6	1750	hgsc.bcm.edu	37	7	96639340	96639340	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	190.0	39.0	123.0	0.0	0.205263	0	.	.	none	.	DLX6	37	.	NM_005222	exon3	c.A863C	p.Q288P	CGATGCAGAGACC	.	PASS	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	37	15	48703210	48703210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	155.0	65.0	243.0	0.0	0.419355	0	.	.	none	.	FBN1	310	.	NM_000138	exon66	c.A8593C	p.K2865Q	GGATTTTCATCTT	.	PASS	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	37	7	128489252	128489252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	254.0	70.0	181.0	1.0	0.275591	0.00552486	.	.	none	FLNC,NS,carcinoma,0,1	FLNC	339	1	NM_001127487	exon29	c.G4945A	p.G1649S	GGCCATGGCCTGG	.	scavenged	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	37	14	42356853	42356853	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	135.0	39.0	121.0	0.0	0.288889	0	.	.	none	LRFN5,NS,carcinoma,-1,2	LRFN5	269	2	NM_152447	exon3	c.T1025G	p.L342R	GAACACTTGACAT	.	PASS	Atlas-SNP
CDH20	28316	hgsc.bcm.edu	37	18	59166652	59166652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	211.0	23.0	113.0	0.0	0.109005	0	.	.	none	.	CDH20	117	.	NM_031891	exon2	c.C480A	p.D160E	CAATGACAATGAG	.	PASS	Atlas-SNP
GABRG3	2567	hgsc.bcm.edu	37	15	27777873	27777873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	151.0	56.0	184.0	0.0	0.370861	0	.	.	none	.	GABRG3	115	.	NM_033223	exon10	c.T1250G	p.F417C	AGAGCTTCTTCTG	.	PASS	Atlas-SNP
DPP10	57628	hgsc.bcm.edu	37	2	116257116	116257116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	134.0	51.0	204.0	0.0	0.380597	0	.	.	none	.	DPP10	415	.	NM_001178034	exon4	c.G314T	p.G105V	AGAATGGACATGT	.	PASS	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	37	15	87089240	87089240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	201.0	55.0	244.0	0.0	0.273632	0	.	.	none	AGBL1,NS,carcinoma,+1,1	AGBL1	151	1	NM_152336	exon19	c.G2555T	p.C852F	TTTTCTGTGACTT	.	PASS	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	37	5	7709382	7709382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	72.0	32.0	87.0	0.0	0.444444	0	.	.	none	.	ADCY2	337	.	NM_020546	exon10	c.A1460C	p.K487T	GAGCCAAAATGAG	.	PASS	Atlas-SNP
ANK3	288	hgsc.bcm.edu	37	10	61845008	61845008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	90.0	4.0	99.0	0.0	0.0444444	0	.	.	none	.	ANK3	703	.	NM_001204404	exon32	c.G3755A	p.G1252D	GAAGTGCCCCCTG	.	PASS	Atlas-SNP
CHST11	50515	hgsc.bcm.edu	37	12	105150950	105150950	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	154.0	64.0	135.0	0.0	0.415584	0	.	.	none	.	CHST11	54	.	NM_018413	exon3	c.A428C	p.K143T	GGGGGAAGTACAG	.	PASS	Atlas-SNP
TBC1D23	55773	hgsc.bcm.edu	37	3	100039768	100039768	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	85.0	28.0	76.0	0.0	0.329412	0	.	.	none	.	TBC1D23	133	.	NM_001199198	exon18	c.G1971C	p.K657N	CTTCAAGTATGGA	.	PASS	Atlas-SNP
RGS6	9628	hgsc.bcm.edu	37	14	72976974	72976974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	90.0	31.0	78.0	0.0	0.344444	0	.	.	none	.	RGS6	92	.	NM_001204424	exon14	c.T1078C	p.S360P	TTCAGTTCAGAAA	.	PASS	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	37	2	228882763	228882763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	159.0	68.0	201.0	1.0	0.427673	0.00497512	.	.	none	SPHKAP_ENST00000392056,NS,carcinoma,0,2	SPHKAP	750	2	NM_030623	exon7	c.C2807T	p.T936M	ACGACCGTGTCTG	.	scavenged	Atlas-SNP
EEF1B2	1933	hgsc.bcm.edu	37	2	207024768	207024768	+	Missense_Mutation	SNP	A	A	G	rs11546380		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	110.0	5.0	163.0	2.0	0.0454545	0.0122699	.	.	weak	EEF1B2,colon,carcinoma,-1,1	EEF1B2	58	1	NM_021121	exon2	c.A65G	p.K22R	CGGACAAGAGCTA	.	scavenged	Atlas-SNP
YIPF7	285525	hgsc.bcm.edu	37	4	44652108	44652108	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	101.0	45.0	118.0	0.0	0.445545	0	.	.	none	.	YIPF7	33	.	NM_182592	exon2	c.T82G	p.L28V	GTGCCAAGTTTGA	.	PASS	Atlas-SNP
ZMYM4	9202	hgsc.bcm.edu	37	1	35847205	35847205	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	128.0	33.0	122.0	1.0	0.257812	0.00819672	.	.	none	ZMYM4,NS,carcinoma,-1,1	ZMYM4	143	1	NM_005095	exon9	c.T1415G	p.F472C	CCTGCTTCTCTAA	.	scavenged	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	37	21	41446993	41446993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	128.0	52.0	114.0	0.0	0.40625	0	.	.	none	DSCAM,NS,carcinoma,-1,1	DSCAM	347	1	NM_001271534	exon27	c.G4859A	p.R1620Q	TCCCGCCGCCTCC	.	PASS	Atlas-SNP
PCDHGB2	56103	hgsc.bcm.edu	37	5	140741034	140741034	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	145.0	92.0	158.0	0.0	0.634483	0	.	.	none	.	PCDHGB2	196	.	NM_018923	exon1	c.C1332T	p.D444D	CTCCGACGTCAAC	.	PASS	Atlas-SNP
CHKA	1119	hgsc.bcm.edu	37	11	67833918	67833918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	164.0	57.0	133.0	0.0	0.347561	0	.	.	none	.	CHKA	41	.	NM_001277	exon8	c.G994A	p.E332K	TGTATTCGAAATC	.	PASS	Atlas-SNP
CSDE1	7812	hgsc.bcm.edu	37	1	115276720	115276720	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	34.0	16.0	44.0	0.0	0.470588	0	.	.	none	.	CSDE1	145	.	NM_001242891	exon9	c.G739T	p.E247X	CTCTTTCAATAAA	.	PASS	Atlas-SNP
OTOP1	133060	hgsc.bcm.edu	37	4	4199791	4199791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	150.0	64.0	144.0	0.0	0.426667	0	.	.	none	.	OTOP1	118	.	NM_177998	exon5	c.C770T	p.P257L	AGAGTTGGGGGCG	.	PASS	Atlas-SNP
GPC6	10082	hgsc.bcm.edu	37	13	93879793	93879793	+	Silent	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	66.0	26.0	86.0	0.0	0.393939	0	.	.	none	.	GPC6	102	.	NM_005708	exon1	c.G84T	p.R28R	GGCTCGGAGCTGC	.	PASS	Atlas-SNP
SLC35G6	643664	hgsc.bcm.edu	37	17	7386301	7386301	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	132.0	11.0	141.0	2.0	0.0833333	0.0141844	.	.	none	POLR2A_ENST00000412468,NS,carcinoma,0,1	.	.	1	NM_001102614	exon2	c.A998C	p.E333A	AGAGGGAAGGGAA	.	scavenged	Atlas-SNP
BMP5	653	hgsc.bcm.edu	37	6	55739470	55739470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	146.0	31.0	116.0	0.0	0.212329	0	.	.	none	.	BMP5	94	.	NM_021073	exon1	c.C194A	p.P65H	GGTCTGGGTCTGT	.	PASS	Atlas-SNP
SLC44A2	57153	hgsc.bcm.edu	37	19	10748564	10748564	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	237.0	114.0	274.0	0.0	0.481013	0	.	.	none	.	SLC44A2	56	.	NM_020428	exon18	c.G1728A	p.S576S	CACCTCGGCCAGG	.	PASS	Atlas-SNP
FBLN1	2192	hgsc.bcm.edu	37	22	45970519	45970519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	46.0	4.0	76.0	0.0	0.0869565	0	.	.	none	.	FBLN1	143	.	NM_006486	exon15	c.T1826C	p.F609S	GCGAGTTCACCCG	.	PASS	Atlas-SNP
APC	324	hgsc.bcm.edu	37	5	112173494	112173494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	76.0	23.0	91.0	0.0	0.302632	0	.	.	none	APC,NS,carcinoma,-2,1	APC	4158	1	NM_001127510	exon17	c.G2203A	p.A735T	AGGCCTGCGAAGT	.	PASS	Atlas-SNP
PGPEP1L	145814	hgsc.bcm.edu	37	15	99511839	99511839	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	178.0	47.0	137.0	0.0	0.264045	0	.	.	none	PGPEP1L,NS,carcinoma,-1,1	PGPEP1L	26	1	NM_001102612	exon5	c.G459A	p.G153G	CGGGAGCCCGCGC	.	PASS	Atlas-SNP
OR4C46	119749	hgsc.bcm.edu	37	11	51516008	51516008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	199.0	77.0	238.0	0.0	0.386935	0	.	.	none	.	OR4C46	96	.	NM_001004703	exon1	c.A727G	p.T243A	CACATCACGGTTG	.	PASS	Atlas-SNP
ZNF436	80818	hgsc.bcm.edu	37	1	23689381	23689381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	222.0	91.0	249.0	1.0	0.40991	0.00401606	.	.	none	.	ZNF436	49	.	NM_001077195	exon4	c.C494A	p.P165H	TTATAGGGTCTGT	.	PASS	Atlas-SNP
HN1	51155	hgsc.bcm.edu	37	17	73132201	73132201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	128.0	49.0	172.0	0.0	0.382812	0	.	.	none	.	HN1	17	.	NM_016185	exon5	c.G461A	p.G154D	AGCTAACCCAAGA	.	PASS	Atlas-SNP
COX2	5743	hgsc.bcm.edu	37	MT	7818	7818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	15.0	14.0	5.0	0.0	0.933333	0	.	.	none	.	.	.	.	ENST00000361739	exon1	c.T233C	p.L78P	TCGCCCTCCCATC	.	PASS	Atlas-SNP
C11orf86	254439	hgsc.bcm.edu	37	11	66743072	66743072	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	63.0	33.0	61.0	0.0	0.52381	0	.	.	none	.	C11orf86	7	.	NM_001136485	exon1	c.G239C	p.R80P	CCCAGCGAAGAGG	.	PASS	Atlas-SNP
MEX3A	92312	hgsc.bcm.edu	37	1	156047300	156047300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	108.0	7.0	140.0	0.0	0.0648148	0	.	.	none	.	MEX3A	33	.	NM_001093725	exon2	c.T628C	p.S210P	CGCCTGACTTGTT	.	PASS	Atlas-SNP
EPS8L2	64787	hgsc.bcm.edu	37	11	726366	726366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	154.0	67.0	125.0	0.0	0.435065	0	.	.	none	.	EPS8L2	42	.	NM_022772	exon19	c.G1816A	p.A606T	ATCAGGGCGCAGC	.	PASS	Atlas-SNP
SLC35E3	55508	hgsc.bcm.edu	37	12	69140524	69140524	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	86.0	4.0	92.0	0.0	0.0465116	0	.	.	none	.	SLC35E3	23	.	NM_018656	exon1	c.C367T	p.Q123X	TGCTACCAGAAAA	.	PASS	Atlas-SNP
PPIP5K2	23262	hgsc.bcm.edu	37	5	102465357	102465357	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	40.0	4.0	39.0	0.0	0.1	0	.	.	none	.	PPIP5K2	98	.	NM_015216	exon1	c.C64T	p.R22X	AATTATCGACATT	.	PASS	Atlas-SNP
THOC7	80145	hgsc.bcm.edu	37	3	63824125	63824125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	263.0	74.0	264.0	0.0	0.281369	0	.	.	none	.	THOC7	24	.	NM_025075	exon3	c.C188T	p.S63L	CCCATTGAAAATT	.	PASS	Atlas-SNP
DAGLA	747	hgsc.bcm.edu	37	11	61495668	61495668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	94.0	37.0	126.0	0.0	0.393617	0	.	.	none	.	DAGLA	109	.	NM_006133	exon7	c.G680A	p.R227Q	TCTTCCGGGACCT	.	PASS	Atlas-SNP
ZMYM4	9202	hgsc.bcm.edu	37	1	35847247	35847247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	163.0	33.0	166.0	0.0	0.202454	0	.	.	none	.	ZMYM4	143	.	NM_005095	exon9	c.G1457T	p.C486F	ACTGTTGTGAGAA	.	PASS	Atlas-SNP
OR2M2	391194	hgsc.bcm.edu	37	1	248344182	248344182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	137.0	93.0	295.0	0.0	0.678832	0	.	.	none	.	OR2M2	149	.	NM_001004688	exon1	c.A895G	p.R299G	GTGACTAGAGCAT	.	PASS	Atlas-SNP
TAAR2	9287	hgsc.bcm.edu	37	6	132938981	132938981	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	98.0	25.0	88.0	0.0	0.255102	0	.	.	none	.	TAAR2	45	.	NM_001033080	exon2	c.T364G	p.F122V	GGTCAAAACTATA	.	PASS	Atlas-SNP
GRIN2B	2904	hgsc.bcm.edu	37	12	13716441	13716441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	64.0	20.0	75.0	0.0	0.3125	0	.	.	none	.	GRIN2B	303	.	NM_000834	exon13	c.C3731T	p.A1244V	TTGCAAGCCTCAC	.	PASS	Atlas-SNP
SYCP1	6847	hgsc.bcm.edu	37	1	115487569	115487569	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	120.0	42.0	137.0	0.0	0.35	0	.	.	none	.	SYCP1	149	.	NM_003176	exon25	c.T2120G	p.I707R	ATAAAATAGCTGA	.	PASS	Atlas-SNP
HTT	3064	hgsc.bcm.edu	37	4	3129287	3129287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	226.0	92.0	238.0	0.0	0.40708	0	.	.	none	.	HTT	221	.	NM_002111	exon12	c.G1699A	p.E567K	ACCACCGAAGGGC	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49415920	49415920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	49.0	16.0	81.0	0.0	0.326531	0	.	.	none	.	MLL2	1173	.	NM_003482	exon53	c.C16427A	p.S5476Y	GCACAGGAATGGT	.	PASS	Atlas-SNP
IKZF2	22807	hgsc.bcm.edu	37	2	213872764	213872764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	110.0	41.0	116.0	0.0	0.372727	0	.	.	none	IKZF2,NS,carcinoma,+2,1	IKZF2	71	1	NM_016260	exon8	c.A901G	p.M301V	AGTTCATATCAAA	.	PASS	Atlas-SNP
OR5H1	26341	hgsc.bcm.edu	37	3	97852211	97852211	+	Missense_Mutation	SNP	G	G	A	rs72926074	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	204.0	11.0	268.0	0.0	0.0539216	0	G|0.981;A|0.019	0.019	strong	.	OR5H1	71	.	NM_001005338	exon1	c.G670A	p.A224T	CTCTTCGCAATCT	.	PASS	Atlas-SNP
DPYSL5	56896	hgsc.bcm.edu	37	2	27163001	27163001	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	65.0	20.0	58.0	0.0	0.307692	0	.	.	none	.	DPYSL5	69	.	NM_001253724	exon9	c.C1050T	p.G350G	GAGTGGCGTGCAG	.	PASS	Atlas-SNP
MST1	4485	hgsc.bcm.edu	37	3	49723296	49723296	+	Missense_Mutation	SNP	G	G	A	rs80308386	byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	112.0	10.0	119.0	0.0	0.0892857	0	G|0.375;A|0.625	0.625	strong	MST1,trunk,malignant_melanoma,0,3	MST1	84	3	NM_020998	exon10	c.C1247T	p.P416L	CACTGCGGCTTGT	.	scavenged	Atlas-SNP
PROM2	150696	hgsc.bcm.edu	37	2	95953995	95953995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	68.0	3.0	79.0	0.0	0.0441176	0	.	.	none	PROM2,NS,carcinoma,-1,1	PROM2	78	1	NM_001165977	exon21	c.G2281A	p.G761R	CTCTCCGGAGCCC	.	scavenged	Atlas-SNP
MARCH7	64844	hgsc.bcm.edu	37	2	160599591	160599591	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	143.0	62.0	147.0	0.0	0.433566	0	.	.	none	.	MARCH7	48	.	NM_022826	exon3	c.C173G	p.S58C	CAGCATCTGCGTC	.	PASS	Atlas-SNP
RETSAT	54884	hgsc.bcm.edu	37	2	85577909	85577909	+	Silent	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	124.0	46.0	140.0	0.0	0.370968	0	.	.	none	.	RETSAT	56	.	NM_017750	exon3	c.G591T	p.L197L	CTTAACCAGCTTT	.	PASS	Atlas-SNP
SAMHD1	25939	hgsc.bcm.edu	37	20	35559188	35559188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	91.0	44.0	114.0	0.0	0.483516	0	.	.	none	.	SAMHD1	62	.	NM_015474	exon5	c.G600T	p.Q200H	AGCAATCTGAACA	.	PASS	Atlas-SNP
SERPINB2	5055	hgsc.bcm.edu	37	18	61562516	61562516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	182.0	35.0	125.0	0.0	0.192308	0	.	.	none	.	SERPINB2	63	.	NM_002575	exon3	c.G187T	p.V63L	AATGAAGTGGGAG	.	PASS	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	37	11	6646497	6646497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	52.0	25.0	77.0	0.0	0.480769	0	.	.	none	.	DCHS1	277	.	NM_003737	exon19	c.G7078A	p.A2360T	GGTTGGCACGGCC	.	PASS	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	37	6	46658993	46658993	+	Missense_Mutation	SNP	A	A	C	rs138212613	alternate_allele	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	127.0	38.0	95.0	1.0	0.299213	0.0105263	A|1.000;G|0.000	.	alt	TDRD6,NS,carcinoma,0,1	TDRD6	205	1	NM_001168359	exon1	c.A3128C	p.K1043T	TTGCCAAGTATAC	.	scavenged	Atlas-SNP
SYNJ2	8871	hgsc.bcm.edu	37	6	158504550	158504550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	92.0	29.0	77.0	0.0	0.315217	0	.	.	none	.	SYNJ2	111	.	NM_003898	exon21	c.G2955A	p.M985I	CAGCATGGCCCCC	.	PASS	Atlas-SNP
ZSWIM4	65249	hgsc.bcm.edu	37	19	13915887	13915887	+	Missense_Mutation	SNP	A	A	C	rs199644245	by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	39.0	16.0	24.0	0.0	0.410256	0	A|1.000;C|0.000	0.000	strong	.	ZSWIM4	69	.	NM_023072	exon3	c.A637C	p.T213P	CATCACACTGAGG	.	PASS	Atlas-SNP
ALG10	84920	hgsc.bcm.edu	37	12	34179242	34179242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	292.0	111.0	343.0	0.0	0.380137	0	.	.	none	.	ALG10	53	.	NM_032834	exon3	c.G814A	p.G272S	GTTAATGGTGGAA	.	PASS	Atlas-SNP
PTPN21	11099	hgsc.bcm.edu	37	14	88951488	88951488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	89.0	34.0	138.0	0.0	0.382022	0	.	.	none	.	PTPN21	113	.	NM_007039	exon12	c.A1010G	p.Y337C	ATCACGTAGGGCT	.	PASS	Atlas-SNP
OCRL	4952	hgsc.bcm.edu	37	X	128709154	128709154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	105.0	86.0	136.0	1.0	0.819048	0.00735294	.	.	none	.	OCRL	117	.	NM_000276	exon16	c.T1640G	p.F547C	AAGTCTTTGAAGA	.	PASS	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	37	7	11509616	11509616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	85.0	28.0	79.0	0.0	0.329412	0	.	.	none	THSD7A,mouth,carcinoma,+1,1	THSD7A	219	1	NM_015204	exon9	c.C2258A	p.P753H	CTTTCAGGACATC	.	PASS	Atlas-SNP
SEPT6	23157	hgsc.bcm.edu	37	X	118797638	118797638	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	50.0	32.0	107.0	0.0	0.64	0	.	.	none	.	SEPT6	53	.	NM_145802	exon3	c.G148T	p.E50X	CTGTCTCTCCTGA	.	PASS	Atlas-SNP
OR5H15	403274	hgsc.bcm.edu	37	3	97888289	97888289	+	Missense_Mutation	SNP	G	G	C	rs140807945		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	292.0	23.0	209.0	0.0	0.0787671	0	G|0.999;C|0.001	0.001	weak	OR5H15,colon,carcinoma,0,2	OR5H15	70	2	NM_001005515	exon1	c.G746C	p.C249S	CTGTCTGTTTATA	.	PASS	Atlas-SNP
COL8A1	1295	hgsc.bcm.edu	37	3	99514003	99514003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	77.0	31.0	43.0	0.0	0.402597	0	.	.	none	.	COL8A1	68	.	NM_001850	exon5	c.G1258A	p.G420R	ATTGTAGGGCCAC	.	PASS	Atlas-SNP
SUPT5H	6829	hgsc.bcm.edu	37	19	39948337	39948337	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	179.0	72.0	160.0	0.0	0.402235	0	.	.	none	.	SUPT5H	119	.	NM_001130825	exon4	c.C264T	p.D88D	TGAGGACGAGGAC	.	PASS	Atlas-SNP
MX1	4599	hgsc.bcm.edu	37	21	42817373	42817373	+	Splice_Site	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	60.0	21.0	74.0	0.0	0.35	0	.	.	none	.	MX1	58	.	NM_001144925	exon14	c.1009-2A>G	.	TTCCTCAGAAATC	.	PASS	Atlas-SNP
ANKRD29	147463	hgsc.bcm.edu	37	18	21197729	21197729	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	177.0	28.0	85.0	0.0	0.158192	0	.	.	none	.	ANKRD29	24	.	NM_173505	exon8	c.G690A	p.L230L	TTTAAGCAACTCT	.	PASS	Atlas-SNP
ATP13A5	344905	hgsc.bcm.edu	37	3	193051546	193051546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	112.0	29.0	80.0	0.0	0.258929	0	.	.	none	.	ATP13A5	171	.	NM_198505	exon11	c.A1265G	p.Y422C	CCATGGTACATAT	.	PASS	Atlas-SNP
NFIB	4781	hgsc.bcm.edu	37	9	14307015	14307015	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	140.0	44.0	172.0	0.0	0.314286	0	.	.	none	.	NFIB	91	.	NM_001190738	exon2	c.T613G	p.F205V	CCAAAAACAAATC	.	PASS	Atlas-SNP
ACOX1	51	hgsc.bcm.edu	37	17	73944495	73944495	+	Missense_Mutation	SNP	C	C	T	rs369561903		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	58.0	3.0	74.0	0.0	0.0517241	0	.	.	weak	ACOX1_ENST00000301608,caecum,carcinoma,-1,2	ACOX1	85	2	NM_007292	exon13	c.G1772A	p.R591H	TTTACACGCTGGT	.	scavenged	Atlas-SNP
GULP1	51454	hgsc.bcm.edu	37	2	189405948	189405948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	96.0	39.0	135.0	0.0	0.40625	0	.	.	none	.	GULP1	35	.	NM_016315	exon7	c.G302A	p.C101Y	CTTTTTGTGCAGA	.	PASS	Atlas-SNP
ARPP21	10777	hgsc.bcm.edu	37	3	35758809	35758809	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	120.0	37.0	130.0	0.0	0.308333	0	.	.	none	.	ARPP21	153	.	NM_016300	exon13	c.A955T	p.N319Y	GACAGTAACATAT	.	PASS	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141079638	141079638	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	127.0	54.0	166.0	0.0	0.425197	0	.	.	none	.	LRP1B	1315	.	NM_018557	exon82	c.T12534C	p.D4178D	TGCTAAATCCAAG	.	PASS	Atlas-SNP
SH3TC1	54436	hgsc.bcm.edu	37	4	8224646	8224646	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	95.0	45.0	125.0	0.0	0.473684	0	.	.	none	.	SH3TC1	105	.	NM_018986	exon10	c.C1192T	p.Q398X	GCCAGGCAGTTGC	.	PASS	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	37	1	167097477	167097477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	88.0	41.0	99.0	0.0	0.465909	0	.	.	none	.	DUSP27	235	.	NM_001080426	exon5	c.C3109T	p.P1037S	GAGAGCCCAGAGC	.	PASS	Atlas-SNP
MIPEP	4285	hgsc.bcm.edu	37	13	24436455	24436455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	133.0	48.0	212.0	0.0	0.360902	0	.	.	none	.	MIPEP	53	.	NM_005932	exon9	c.A1039G	p.N347D	GAGGATTCAGTTT	.	PASS	Atlas-SNP
ZNF691	51058	hgsc.bcm.edu	37	1	43317125	43317125	+	Missense_Mutation	SNP	C	C	T	rs201360083	by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	66.0	4.0	68.0	0.0	0.0606061	0	C|1.000;T|0.000	0.000	strong	.	ZNF691	30	.	NM_001242739	exon4	c.C589T	p.R197W	GGCAAGCGGCCAT	.	PASS	Atlas-SNP
EYA4	2070	hgsc.bcm.edu	37	6	133836535	133836535	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	94.0	20.0	82.0	0.0	0.212766	0	.	.	none	EYA4_ENST00000355167,NS,carcinoma,+2,2	EYA4	196	2	NM_172105	exon17	c.A1578G	p.L526L	CTGGCTAACAAAT	.	PASS	Atlas-SNP
CCDC37	348807	hgsc.bcm.edu	37	3	126142198	126142198	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	145.0	42.0	154.0	0.0	0.289655	0	.	.	none	.	CCDC37	69	.	NM_182628	exon12	c.G1113A	p.E371E	GCAGGAGGACACC	.	PASS	Atlas-SNP
P2RY8	286530	hgsc.bcm.edu	37	X	1584851	1584851	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	48.0	35.0	87.0	0.0	0.729167	0	.	.	none	.	P2RY8	53	.	NM_178129	exon2	c.C601G	p.L201V	GGAACAGCAGGAT	.	PASS	Atlas-SNP
PITPNM3	83394	hgsc.bcm.edu	37	17	6367558	6367558	+	Silent	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	77.0	25.0	140.0	0.0	0.324675	0	.	.	none	PITPNM3,colon,carcinoma,-1,1	PITPNM3	91	1	NM_031220	exon16	c.C2088G	p.R696R	TGTGATGCGACCA	.	PASS	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237580416	237580416	+	Silent	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	63.0	22.0	65.0	0.0	0.349206	0	.	.	none	RYR2,NS,carcinoma,-1,2	RYR2	1273	2	NM_001035	exon11	c.A841C	p.R281R	ACGCTAAGAGTTG	.	PASS	Atlas-SNP
PRRT4	401399	hgsc.bcm.edu	37	7	127992592	127992592	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	87.0	23.0	51.0	0.0	0.264368	0	.	.	none	.	PRRT4	31	.	NM_001174164	exon6	c.C1018G	p.P340A	GCCTCGGCGCCTC	.	PASS	Atlas-SNP
ETS2	2114	hgsc.bcm.edu	37	21	40194761	40194761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	40.0	23.0	53.0	0.0	0.575	0	.	.	none	ETS2_ENST00000360214,caecum,carcinoma,-1,2	ETS2	87	2	NM_001256295	exon11	c.C1778T	p.T593M	GGTTCACGCCCGA	.	PASS	Atlas-SNP
HERC5	51191	hgsc.bcm.edu	37	4	89427002	89427002	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	173.0	68.0	207.0	0.0	0.393064	0	.	.	none	.	HERC5	114	.	NM_016323	exon23	c.C3048T	p.A1016A	AGAAGCCATCAAC	.	PASS	Atlas-SNP
ADORA1	134	hgsc.bcm.edu	37	1	203134499	203134499	+	Missense_Mutation	SNP	C	C	T	rs145647777	bycluster;byfrequency	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	128.0	60.0	157.0	0.0	0.46875	0	C|1.000;T|0.000	0.000	strong	.	ADORA1	62	.	NM_001048230	exon3	c.C452T	p.A151V	TGAGTGCGGTGGA	.	PASS	Atlas-SNP
CNTNAP4	85445	hgsc.bcm.edu	37	16	76350339	76350339	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	126.0	54.0	150.0	0.0	0.428571	0	.	.	none	.	CNTNAP4	600	.	NM_138994	exon2	c.T40G	p.L14V	TCTGCCTTGCCTC	.	PASS	Atlas-SNP
ARMCX5	64860	hgsc.bcm.edu	37	X	101858511	101858511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	78.0	4.0	166.0	0.0	0.0512821	0	.	.	none	.	ARMCX5	55	.	NM_022838	exon3	c.C1442T	p.P481L	TTGCACCCTTTAA	.	PASS	Atlas-SNP
TRPM6	140803	hgsc.bcm.edu	37	9	77473596	77473596	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	73.0	46.0	199.0	0.0	0.630137	0	.	.	none	.	TRPM6	377	.	NM_017662	exon2	c.A102C	p.K34N	AGGATTTTTTGAG	.	PASS	Atlas-SNP
CRTC3	64784	hgsc.bcm.edu	37	15	91172567	91172567	+	Missense_Mutation	SNP	G	G	A	rs140158187	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	250.0	70.0	169.0	0.0	0.28	0	G|0.996;A|0.004	0.004	strong	.	CRTC3	47	.	NM_022769	exon11	c.G1069A	p.A357T	CCCAACGCATCTG	.	PASS	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	37	3	52398997	52398997	+	Missense_Mutation	SNP	G	G	A	rs377201322		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	103.0	35.0	94.0	0.0	0.339806	0	.	.	weak	DNAH1_ENST00000420323,NS,carcinoma,0,4	DNAH1	534	4	NM_015512	exon34	c.G5480A	p.R1827H	CCATCCGCGAGGC	.	PASS	Atlas-SNP
BIRC2	329	hgsc.bcm.edu	37	11	102248352	102248352	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	75.0	25.0	77.0	0.0	0.333333	0	.	.	none	.	BIRC2	51	.	NM_001256163	exon7	c.C1492G	p.Q498E	ATTAAACAAAAAA	.	PASS	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	37	19	36002369	36002369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	55.0	5.0	55.0	2.0	0.0909091	0.0363636	.	.	none	DMKN_ENST00000424570,NS,carcinoma,0,3	DMKN	116	3	NM_001126058	exon5	c.G862A	p.G288S	TGCTGCCACCACT	.	scavenged	Atlas-SNP
ZNF519	162655	hgsc.bcm.edu	37	18	14105585	14105585	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	86.0	4.0	49.0	0.0	0.0465116	0	.	.	none	ZNF519,NS,carcinoma,0,1	ZNF519	53	1	NM_145287	exon3	c.G954A	p.K318K	GAAAGGCTTCTCT	.	PASS	Atlas-SNP
G2E3	55632	hgsc.bcm.edu	37	14	31066658	31066658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	206.0	59.0	183.0	0.0	0.286408	0	.	.	none	.	G2E3	82	.	NM_017769	exon7	c.T561G	p.F187L	TTTCTTTAGGTGT	.	PASS	Atlas-SNP
SEMA4B	10509	hgsc.bcm.edu	37	15	90770838	90770838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	77.0	17.0	74.0	0.0	0.220779	0	.	.	none	.	SEMA4B	51	.	NM_020210	exon14	c.G1738A	p.A580T	TGCAGCGCGTCTT	.	PASS	Atlas-SNP
CBX6	23466	hgsc.bcm.edu	37	22	39263079	39263079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	30.0	10.0	26.0	0.0	0.333333	0	.	.	none	.	CBX6	26	.	NM_014292	exon5	c.G374A	p.R125H	TGGCAGCGGCGGA	.	PASS	Atlas-SNP
GGNBP2	79893	hgsc.bcm.edu	37	17	34912947	34912947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	90.0	30.0	100.0	0.0	0.333333	0	.	.	none	.	GGNBP2	72	.	NM_024835	exon4	c.G199T	p.D67Y	CAACAGGATCTAA	.	PASS	Atlas-SNP
THBS2	7058	hgsc.bcm.edu	37	6	169632988	169632988	+	Silent	SNP	G	G	A	rs148676859	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	82.0	20.0	65.0	0.0	0.243902	0	G|1.000;A|0.000	0.000	weak	.	THBS2	230	.	NM_003247	exon12	c.C1776T	p.D592D	CACCTCGTCCAGG	.	PASS	Atlas-SNP
SACS	26278	hgsc.bcm.edu	37	13	23908805	23908805	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	117.0	46.0	125.0	0.0	0.393162	0	.	.	none	.	SACS	871	.	NM_014363	exon10	c.T9210C	p.V3070V	GTTATAAACCAAG	.	PASS	Atlas-SNP
OR5H1	26341	hgsc.bcm.edu	37	3	97852220	97852220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	211.0	19.0	255.0	0.0	0.0900474	0	.	.	none	.	OR5H1	71	.	NM_001005338	exon1	c.A679G	p.K227E	ATCTTAAAAAAGA	.	PASS	Atlas-SNP
ANKRD33	341405	hgsc.bcm.edu	37	12	52284881	52284881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	118.0	6.0	100.0	0.0	0.0508475	0	.	.	none	.	ANKRD33	33	.	NM_182608	exon5	c.T1151C	p.L384P	AGTGCCTTCAGTG	.	PASS	Atlas-SNP
ZBTB20	26137	hgsc.bcm.edu	37	3	114069130	114069130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	323.0	87.0	252.0	0.0	0.26935	0	.	.	none	.	ZBTB20	157	.	NM_001164342	exon4	c.G1795A	p.V599I	TGTGTACGAACAT	.	PASS	Atlas-SNP
MDGA2	161357	hgsc.bcm.edu	37	14	47530650	47530650	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	228.0	53.0	203.0	0.0	0.232456	0	.	.	none	.	MDGA2	470	.	NM_001113498	exon7	c.T1327G	p.F443V	TTTTAAACCAACT	.	PASS	Atlas-SNP
ADAMTS9	56999	hgsc.bcm.edu	37	3	64536662	64536662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	208.0	52.0	184.0	0.0	0.25	0	.	.	none	.	ADAMTS9	206	.	NM_182920	exon31	c.G4775T	p.G1592V	CGTGCCCCATGCA	.	PASS	Atlas-SNP
OR51A4	401666	hgsc.bcm.edu	37	11	4967768	4967768	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	805.0	200.0	905.0	0.0	0.248447	0	.	.	none	.	OR51A4	73	.	NM_001005329	exon1	c.A563C	p.K188T	GCCAACTTCATGA	.	PASS	Atlas-SNP
HMGCR	3156	hgsc.bcm.edu	37	5	74655105	74655105	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	64.0	30.0	84.0	0.0	0.46875	0	.	.	none	.	HMGCR	53	.	NM_000859	exon17	c.T2268G	p.I756M	AAACATTGTCACC	.	PASS	Atlas-SNP
TMC1	117531	hgsc.bcm.edu	37	9	75355045	75355045	+	Missense_Mutation	SNP	A	A	C	rs377607548		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	60.0	20.0	80.0	0.0	0.333333	0	.	.	weak	.	TMC1	87	.	NM_138691	exon9	c.A373C	p.K125Q	GCAAAAAAATTTG	.	PASS	Atlas-SNP
KLHL14	57565	hgsc.bcm.edu	37	18	30257201	30257201	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	273.0	56.0	188.0	0.0	0.205128	0	.	.	none	.	KLHL14	92	.	NM_020805	exon8	c.A1681C	p.S561R	GGCCACTTCGACC	.	PASS	Atlas-SNP
MAGEB16	139604	hgsc.bcm.edu	37	X	35821008	35821008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	83.0	52.0	173.0	0.0	0.626506	0	.	.	none	.	MAGEB16	64	.	NM_001099921	exon2	c.C695T	p.T232M	ATTTGACGGGAGT	.	PASS	Atlas-SNP
KIF1B	23095	hgsc.bcm.edu	37	1	10363223	10363223	+	Silent	SNP	C	C	T	rs151053483	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	242.0	12.0	286.0	0.0	0.0495868	0	C|0.999;T|0.001	0.001	strong	.	KIF1B	242	.	NM_183416	exon21	c.C1980T	p.D660D	AAAGGACGCGGAT	.	PASS	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126239318	126239318	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	78.0	33.0	98.0	0.0	0.423077	0	.	.	none	.	FAT4	1752	.	NM_024582	exon1	c.G1752A	p.Q584Q	TAGCCAGCCAGAA	.	PASS	Atlas-SNP
TTC7A	57217	hgsc.bcm.edu	37	2	47249048	47249048	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	81.0	4.0	78.0	0.0	0.0493827	0	.	.	none	.	TTC7A	80	.	NM_020458	exon12	c.G1440A	p.E480E	CGGAGAGGAAGCC	.	PASS	Atlas-SNP
MUT	4594	hgsc.bcm.edu	37	6	49423828	49423828	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	208.0	10.0	193.0	0.0	0.0480769	0	.	.	none	.	MUT	70	.	NM_000255	exon4	c.C876T	p.L292L	AGCCTGGAGTCCA	.	PASS	Atlas-SNP
CYSLTR1	10800	hgsc.bcm.edu	37	X	77529241	77529241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	89.0	63.0	222.0	0.0	0.707865	0	.	.	none	.	CYSLTR1	59	.	NM_006639	exon3	c.G3A	p.M1I	TTCATCCATGTTT	.	PASS	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	37	19	41066402	41066402	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	94.0	40.0	123.0	0.0	0.425532	0	.	.	none	.	SPTBN4	213	.	NM_025213	exon10	c.G2036A	p.X679X	TGGAATGACAACA	.	PASS	Atlas-SNP
INPP4B	8821	hgsc.bcm.edu	37	4	143003328	143003328	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	227.0	97.0	219.0	0.0	0.427313	0	.	.	none	.	INPP4B	132	.	NM_003866	exon26	c.A2498C	p.K833T	TTCAGTTTGCGGC	.	PASS	Atlas-SNP
SNRK	54861	hgsc.bcm.edu	37	3	43345043	43345043	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	58.0	22.0	67.0	0.0	0.37931	0	.	.	none	.	SNRK	118	.	NM_017719	exon3	c.C348T	p.A116A	CTTGGCCAAGAAG	.	PASS	Atlas-SNP
NEFL	4747	hgsc.bcm.edu	37	8	24813297	24813297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	80.0	30.0	94.0	0.0	0.375	0	.	.	none	.	NEFL	47	.	NM_006158	exon1	c.G733A	p.V245M	TCTCCACGGAGAT	.	PASS	Atlas-SNP
OR2M3	127062	hgsc.bcm.edu	37	1	248366819	248366819	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	180.0	116.0	384.0	1.0	0.644444	0.00260417	.	.	none	.	OR2M3	116	.	NM_001004689	exon1	c.C450T	p.I150I	CTGGATCCTGGGC	.	PASS	Atlas-SNP
PPARG	5468	hgsc.bcm.edu	37	3	12475443	12475443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	287.0	61.0	217.0	0.0	0.212544	0	.	.	none	.	PPARG	49	.	NM_015869	exon7	c.C1317A	p.D439E	TCAAGACAACCTG	.	PASS	Atlas-SNP
SLC35G6	643664	hgsc.bcm.edu	37	17	7386300	7386300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	134.0	12.0	142.0	2.0	0.0895522	0.0140845	.	.	none	POLR2A_ENST00000412468,NS,carcinoma,-1,1	.	.	1	NM_001102614	exon2	c.G997A	p.E333K	GAGAGGGAAGGGA	.	scavenged	Atlas-SNP
LINGO1	84894	hgsc.bcm.edu	37	15	77906709	77906709	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	84.0	24.0	92.0	0.0	0.285714	0	.	.	none	.	LINGO1	76	.	NM_032808	exon2	c.G1540C	p.V514L	TGCGCACATGCAG	.	PASS	Atlas-SNP
HELZ	9931	hgsc.bcm.edu	37	17	65186460	65186460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	144.0	57.0	179.0	0.0	0.395833	0	.	.	none	.	HELZ	160	.	NM_014877	exon10	c.A569G	p.Q190R	ATTCCTTGTTCTA	.	PASS	Atlas-SNP
TRAK1	22906	hgsc.bcm.edu	37	3	42264607	42264607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	118.0	28.0	106.0	0.0	0.237288	0	.	.	none	.	TRAK1	188	.	NM_001042646	exon16	c.G2240A	p.R747Q	AGGAGCGGGGCAT	.	PASS	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	37	8	144887138	144887138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	32.0	6.0	14.0	0.0	0.1875	0	.	.	none	SCRIB_ENST00000356994,lower_third,carcinoma,+1,2	SCRIB	192	2	NM_015356	exon20	c.C2717T	p.A906V	GTGCCCGCGCGGT	.	PASS	Atlas-SNP
ZMYM3	9203	hgsc.bcm.edu	37	X	70462020	70462020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	35.0	27.0	84.0	0.0	0.771429	0	.	.	none	.	ZMYM3	137	.	NM_005096	exon23	c.G3802A	p.D1268N	TCGTACCTCGCCC	.	PASS	Atlas-SNP
DPYS	1807	hgsc.bcm.edu	37	8	105405212	105405212	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	42.0	20.0	36.0	0.0	0.47619	0	.	.	none	.	DPYS	107	.	NM_001385	exon8	c.T1243G	p.S415A	TTGCTGAGATAGT	.	PASS	Atlas-SNP
BSN	8927	hgsc.bcm.edu	37	3	49692749	49692749	+	Silent	SNP	C	C	T	rs185582385	bycluster;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	254.0	68.0	192.0	0.0	0.267717	0	C|0.999;T|0.001	0.001	strong	.	BSN	272	.	NM_003458	exon5	c.C5760T	p.A1920A	CCCGGCCCCCAGT	.	PASS	Atlas-SNP
PRPF40A	55660	hgsc.bcm.edu	37	2	153547487	153547487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	85.0	5.0	100.0	0.0	0.0588235	0	.	.	none	.	PRPF40A	149	.	NM_017892	exon5	c.G334A	p.A112T	CAGATGCTGTACC	.	PASS	Atlas-SNP
PYGL	5836	hgsc.bcm.edu	37	14	51378473	51378473	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	212.0	56.0	149.0	0.0	0.264151	0	.	.	none	.	PYGL	77	.	NM_002863	exon16	c.C1944T	p.N648N	TCTGTAGTTCTCC	.	PASS	Atlas-SNP
LARP1	23367	hgsc.bcm.edu	37	5	154179585	154179585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	56.0	46.0	59.0	0.0	0.821429	0	.	.	none	.	LARP1	187	.	NM_015315	exon10	c.T1468C	p.S490P	CGGCCATCCCCAG	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253691	1253691	+	Missense_Mutation	SNP	C	C	T	rs56411917	bycluster;byfrequency;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	96.0	42.0	101.0	0.0	0.4375	0	C|0.997;T|0.003	0.003	strong	.	MUC5B	473	.	NM_002458	exon16	c.C1855T	p.R619W	TACGCCCGGCACT	.	PASS	Atlas-SNP
RAI1	10743	hgsc.bcm.edu	37	17	17701758	17701758	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	24.0	11.0	37.0	0.0	0.458333	0	.	.	none	.	RAI1	121	.	NM_030665	exon3	c.C5496T	p.T1832T	GTGGACCGGCGGC	.	PASS	Atlas-SNP
TRPM3	80036	hgsc.bcm.edu	37	9	73477843	73477843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	212.0	82.0	299.0	0.0	0.386792	0	.	.	none	.	TRPM3	700	.	NM_001007471	exon3	c.G443A	p.G148D	GAATGGCCACCTC	.	PASS	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	37	7	47876625	47876625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	169.0	42.0	129.0	0.0	0.248521	0	.	.	none	.	PKD1L1	328	.	NM_138295	exon37	c.C5837T	p.P1946L	GAGGAGGGCCTGC	.	PASS	Atlas-SNP
OVCH1	341350	hgsc.bcm.edu	37	12	29604411	29604411	+	Silent	SNP	A	A	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	121.0	33.0	154.0	0.0	0.272727	0	.	.	none	.	OVCH1	195	.	NM_183378	exon22	c.T2622C	p.S874S	CACCCAAGAACAT	.	PASS	Atlas-SNP
SLC4A7	9497	hgsc.bcm.edu	37	3	27424644	27424644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	109.0	22.0	104.0	0.0	0.201835	0	.	.	none	.	SLC4A7	119	.	NM_003615	exon24	c.G3563T	p.S1188I	TCTCACCTATATT	.	PASS	Atlas-SNP
SEMA5A	9037	hgsc.bcm.edu	37	5	9066712	9066712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	129.0	51.0	172.0	0.0	0.395349	0	.	.	none	.	SEMA5A	236	.	NM_003966	exon17	c.C2120A	p.T707N	GGCGTGGTCTTCT	.	PASS	Atlas-SNP
PAX4	5078	hgsc.bcm.edu	37	7	127253851	127253851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	147.0	36.0	133.0	1.0	0.244898	0.0075188	.	.	none	PAX4,NS,carcinoma,0,1	PAX4	66	1	NM_006193	exon4	c.G497A	p.R166Q	ATAGTCCGATTCC	.	scavenged	Atlas-SNP
DSEL	92126	hgsc.bcm.edu	37	18	65180354	65180354	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	206.0	29.0	97.0	0.0	0.140777	0	.	.	none	.	DSEL	196	.	NM_032160	exon2	c.A1522C	p.N508H	CATTGTTAAGGTG	.	PASS	Atlas-SNP
AATF	26574	hgsc.bcm.edu	37	17	35307529	35307529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	127.0	50.0	116.0	0.0	0.393701	0	.	.	none	.	AATF	36	.	NM_012138	exon2	c.T107C	p.V36A	CCAGGGTGATTGA	.	PASS	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	37	2	153463872	153463872	+	Missense_Mutation	SNP	G	G	A	rs377497365		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	278.0	81.0	369.0	0.0	0.291367	0	.	.	weak	.	FMNL2	75	.	NM_052905	exon10	c.G896A	p.R299H	AACAGCGCTTTGA	.	PASS	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	37	18	22804688	22804688	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	162.0	28.0	62.0	0.0	0.17284	0	.	.	none	ZNF521,lymph_node,lymphoid_neoplasm,0,1	ZNF521	269	1	NM_015461	exon4	c.A3194C	p.Y1065S	CACTTATACAGTT	.	PASS	Atlas-SNP
NXF1	10482	hgsc.bcm.edu	37	11	62564687	62564687	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	168.0	53.0	157.0	0.0	0.315476	0	.	.	none	.	NXF1	67	.	NM_006362	exon13	c.C1146G	p.N382K	CTTCAAGTTTTCT	.	PASS	Atlas-SNP
MSN	4478	hgsc.bcm.edu	37	X	64955264	64955264	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	77.0	55.0	151.0	0.0	0.714286	0	.	.	none	.	MSN	89	.	NM_002444	exon8	c.G931T	p.E311X	GCCCGGGAGGAGA	.	PASS	Atlas-SNP
PDE10A	10846	hgsc.bcm.edu	37	6	165848819	165848819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	139.0	40.0	133.0	0.0	0.28777	0	.	.	none	PDE10A,NS,carcinoma,-1,3	PDE10A	154	3	NM_001130690	exon6	c.G443A	p.R148H	ATGAGGCGGGGTT	.	PASS	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	37	4	30725116	30725116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	66.0	4.0	94.0	0.0	0.0606061	0	.	.	none	.	PCDH7	215	.	NM_032457	exon1	c.C2072T	p.T691M	ATGACACGGGGAC	.	PASS	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	37	6	26156929	26156929	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	222.0	50.0	194.0	0.0	0.225225	0	.	.	none	.	HIST1H1E	69	.	NM_005321	exon1	c.C311G	p.S104C	CGGGTTCCTTCAA	.	PASS	Atlas-SNP
AMY2B	280	hgsc.bcm.edu	37	1	104116508	104116508	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	321.0	115.0	380.0	0.0	0.358255	0	.	.	none	AMY2B,rectum,carcinoma,0,1	AMY2B	80	1	NM_020978	exon6	c.A692T	p.N231I	TGCATAATCTAAA	.	PASS	Atlas-SNP
SLC47A1	55244	hgsc.bcm.edu	37	17	19470152	19470152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	194.0	76.0	291.0	0.0	0.391753	0	.	.	none	.	SLC47A1	55	.	NM_018242	exon13	c.C1156T	p.H386Y	GTTTCCCACCTCT	.	PASS	Atlas-SNP
A2ML1	144568	hgsc.bcm.edu	37	12	9006740	9006740	+	Silent	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	61.0	21.0	83.0	0.0	0.344262	0	.	.	none	.	A2ML1	199	.	NM_144670	exon21	c.T2607C	p.T869T	CTTTACTATTAGT	.	PASS	Atlas-SNP
CPAMD8	27151	hgsc.bcm.edu	37	19	17039035	17039035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	62.0	27.0	54.0	0.0	0.435484	0	.	.	none	.	CPAMD8	192	.	NM_015692	exon25	c.G3295A	p.G1099S	CTGGACCATGGCC	.	PASS	Atlas-SNP
OR2S2	56656	hgsc.bcm.edu	37	9	35957229	35957229	+	Silent	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	87.0	37.0	88.0	0.0	0.425287	0	.	.	none	.	OR2S2	46	.	NM_019897	exon1	c.C867A	p.T289T	CATCGGGGTCACC	.	PASS	Atlas-SNP
TBC1D12	23232	hgsc.bcm.edu	37	10	96163177	96163177	+	Silent	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	119.0	6.0	134.0	0.0	0.0504202	0	.	.	none	.	TBC1D12	51	.	NM_015188	exon1	c.T807C	p.I269I	TGACATTCACTTC	.	PASS	Atlas-SNP
ARSF	416	hgsc.bcm.edu	37	X	3021805	3021805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	109.0	72.0	226.0	1.0	0.66055	0.00442478	.	.	none	.	ARSF	97	.	NM_004042	exon9	c.G1105A	p.G369R	ATAGGTGGAAAAG	.	PASS	Atlas-SNP
MED16	10025	hgsc.bcm.edu	37	19	879943	879943	+	Missense_Mutation	SNP	G	G	C	rs76403059	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	100.0	4.0	99.0	0.0	0.04	0	.	.	weak	MED16,colon,carcinoma,0,1	MED16	61	1	NM_005481	exon8	c.C1347G	p.H449Q	CTTCCCGTGGCTG	.	scavenged	Atlas-SNP
ACOX1	51	hgsc.bcm.edu	37	17	73945827	73945827	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	147.0	58.0	151.0	0.0	0.394558	0	.	.	none	.	ACOX1	85	.	NM_007292	exon10	c.A1450C	p.T484P	CTTCGGTTAGGCT	.	PASS	Atlas-SNP
MAGEC3	139081	hgsc.bcm.edu	37	X	140985325	140985325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	169.0	141.0	211.0	0.0	0.83432	0	.	.	none	.	MAGEC3	228	.	NM_177456	exon5	c.C887A	p.T296N	TGCTCACTATACA	.	PASS	Atlas-SNP
IRAK2	3656	hgsc.bcm.edu	37	3	10251272	10251272	+	Splice_Site	SNP	G	G	A	rs140330791	alternate_allele	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	68.0	14.0	54.0	0.0	0.205882	0	G|1.000;C|0.000	.	alt	IRAK2_ENST00000256458,caecum,carcinoma,-1,2	IRAK2	113	2	NM_001570	exon4	c.425-1G>A	.	TTTCCAGGGTCCT	.	PASS	Atlas-SNP
SALL3	27164	hgsc.bcm.edu	37	18	76755256	76755256	+	Missense_Mutation	SNP	G	G	A	rs200983101	bycluster;by1000genomes	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	8.0	8.0	0.0	0.0	1	.	G|0.996;A|0.004	0.004	strong	.	SALL3	162	.	NM_171999	exon2	c.G3265A	p.G1089R	CCCGCCGGGCCTC	.	PASS	Atlas-SNP
TRDN	10345	hgsc.bcm.edu	37	6	123759264	123759264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	79.0	26.0	52.0	0.0	0.329114	0	.	.	none	.	TRDN	88	.	NM_001251987	exon12	c.A998G	p.K333R	TCTTCTTTTTCTG	.	PASS	Atlas-SNP
TCP1	6950	hgsc.bcm.edu	37	6	160208813	160208813	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	455.0	124.0	380.0	0.0	0.272527	0	.	.	none	.	TCP1	37	.	NM_030752	exon3	c.C241T	p.L81L	CTTGCAGATCAGC	.	PASS	Atlas-SNP
GOLGA6L10	647042	hgsc.bcm.edu	37	15	82637061	82637061	+	Missense_Mutation	SNP	C	C	T	rs201670904	bycluster	TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	4.0	4.0	0.0	0.0	1	.	.	.	weak	.	GOLGA6L10	16	.	NM_001164465	exon6	c.G1025A	p.R342Q	AGCTCCCGCAGCC	.	PASS	Atlas-SNP
ROBO3	64221	hgsc.bcm.edu	37	11	124740064	124740064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	138.0	67.0	130.0	0.0	0.485507	0	.	.	none	ROBO3_ENST00000397801,NS,carcinoma,0,6	ROBO3	199	6	NM_022370	exon5	c.G770T	p.R257L	TAGAGCGTCCCTC	.	PASS	Atlas-SNP
GPC6	10082	hgsc.bcm.edu	37	13	93879792	93879792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	66.0	26.0	87.0	0.0	0.393939	0	.	.	none	.	GPC6	102	.	NM_005708	exon1	c.G83T	p.R28L	AGGCTCGGAGCTG	.	PASS	Atlas-SNP
IER2	9592	hgsc.bcm.edu	37	19	13264330	13264330	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	12.0	7.0	17.0	0.0	0.583333	0	.	.	none	.	IER2	14	.	NM_004907	exon2	c.C330T	p.C110C	CGCCTGCTGTGCC	.	PASS	Atlas-SNP
HIST1H2BJ	8970	hgsc.bcm.edu	37	6	27100241	27100241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	99.0	4.0	98.0	0.0	0.040404	0	.	.	none	.	HIST1H2BJ	21	.	NM_021058	exon1	c.A289G	p.T97A	CGGCCGTCTGGAT	.	PASS	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	37	3	124385389	124385389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	184.0	50.0	171.0	0.0	0.271739	0	.	.	none	.	KALRN	556	.	NM_001024660	exon46	c.C6436T	p.R2146C	GAGAGGCGCGTGT	.	PASS	Atlas-SNP
PHRF1	57661	hgsc.bcm.edu	37	11	608546	608546	+	Silent	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	97.0	39.0	98.0	0.0	0.402062	0	.	.	none	PHRF1_ENST00000264555,NS,lymphoid_neoplasm,+1,2	PHRF1	188	2	NM_020901	exon14	c.G3087A	p.S1029S	GAGCTCGAGGTCA	.	PASS	Atlas-SNP
RNF133	168433	hgsc.bcm.edu	37	7	122338257	122338257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	455.0	87.0	326.0	0.0	0.191209	0	.	.	none	.	RNF133	41	.	NM_139175	exon1	c.T716G	p.L239R	ACTCGAAGTTGGA	.	PASS	Atlas-SNP
DCC	1630	hgsc.bcm.edu	37	18	50432601	50432601	+	Silent	SNP	C	C	T	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	203.0	34.0	113.0	0.0	0.167488	0	.	.	none	DCC,NS,carcinoma,+1,1	DCC	360	1	NM_005215	exon3	c.C600T	p.S200S	GATCAGCCGACTC	.	PASS	Atlas-SNP
CASC3	22794	hgsc.bcm.edu	37	17	38325589	38325589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	206.0	68.0	222.0	0.0	0.330097	0	.	.	none	.	CASC3	39	.	NM_007359	exon12	c.G1978A	p.V660I	TCACAGGTATATG	.	PASS	Atlas-SNP
TRIO	7204	hgsc.bcm.edu	37	5	14359502	14359502	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	376.0	155.0	456.0	0.0	0.412234	0	.	.	none	.	TRIO	305	.	NM_007118	exon13	c.C2253G	p.N751K	CCACAACAGCTCC	.	PASS	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	37	11	6643761	6643761	+	Missense_Mutation	SNP	T	T	A	rs368872716		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	60.0	25.0	77.0	0.0	0.416667	0	.	.	weak	.	DCHS1	277	.	NM_003737	exon21	c.A9146T	p.E3049V	GGGAACTCATTGA	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105418968	105418968	+	Silent	SNP	G	G	C	novel		TCGA-FF-8042-01A-11D-2210-10	TCGA-FF-8042-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	897a4500-6fb8-4e81-aa07-021a26d632fb	92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2	183.0	67.0	236.0	0.0	0.36612	0	.	.	none	.	AHNAK2	719	.	NM_138420	exon7	c.C2820G	p.G940G	CTTGGGGCCCTTA	.	PASS	Atlas-SNP
