Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values
SPEN	23013	broad.mit.edu	37	1	16260498	16260498	+	Missense_Mutation	SNP	C	C	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:16260498C>G	uc001axk.1	+	10	7967	c.7763C>G	c.(7762-7764)cCt>cGt	p.P2588R	SPEN_uc010obp.1_Missense_Mutation_p.P2547R	NM_015001	NP_055816	Q96T58	MINT_HUMAN	Homo sapiens spen homolog, transcriptional regulator (Drosophila) (SPEN), mRNA.	2588	RID.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			NS(1)|breast(13)|central_nervous_system(3)|cervix(5)|endometrium(16)|kidney(18)|large_intestine(27)|liver(2)|lung(37)|ovary(7)|prostate(7)|skin(7)|upper_aerodigestive_tract(5)|urinary_tract(1)	149		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		AAAACAGCACCTCCAGTGACA	0.522												
CLCNKA	1188	broad.mit.edu	37	1	16377403	16377403	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:16377403G>A	uc001axx.4	+	11	1223	c.1087G>A	c.(1087-1089)Gac>Aac	p.D363N	CLCNKA_uc021ogl.1_Intron|CLCNKA_uc021ogm.1_Missense_Mutation_p.D194N|CLCNKA_uc001axy.4_Missense_Mutation_p.D194N	NM_000085	NP_000076	P51800	CLCKA_HUMAN	Homo sapiens chloride channel Kb (CLCNKB), transcript variant 1, mRNA.	363					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			breast(1)|kidney(1)|large_intestine(2)|lung(12)|ovary(2)|skin(1)	19		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	CTCGCTGTTCGACAACCACTC	0.672												
LDLRAD2	401944	broad.mit.edu	37	1	22140914	22140914	+	Missense_Mutation	SNP	C	C	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:22140914C>G	uc001bfg.1	+	1	296	c.109C>G	c.(109-111)Cag>Gag	p.Q37E		NM_001013693	NP_001013715	Q5SZI1	LRAD2_HUMAN	Homo sapiens low density lipoprotein receptor class A domain containing 2 (LDLRAD2), mRNA.	37						integral to membrane	receptor activity			endometrium(2)|large_intestine(1)|lung(3)	6		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.00166)|all_lung(284;0.00172)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;5.2e-26)|COAD - Colon adenocarcinoma(152;1.13e-05)|GBM - Glioblastoma multiforme(114;1.36e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000544)|KIRC - Kidney renal clear cell carcinoma(1967;0.00598)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.197)		ACTGTGCGGGCAGACGTGGCA	0.701												
HSPG2	3339	broad.mit.edu	37	1	22165399	22165399	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:22165399G>A	uc009vqd.3	-	73	10112	c.10072C>T	c.(10072-10074)Cct>Tct	p.P3358S	HSPG2_uc001bfj.3_Missense_Mutation_p.P3357S	NM_005529	NP_005520	P98160	PGBM_HUMAN	Homo sapiens heparan sulfate proteoglycan 2 (HSPG2), mRNA.	3357	Ig-like C2-type 19.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			breast(6)|central_nervous_system(1)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(2)|kidney(9)|large_intestine(15)|liver(1)|lung(44)|ovary(10)|pancreas(1)|prostate(10)|skin(9)|upper_aerodigestive_tract(3)|urinary_tract(3)	127		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	GAGTCCTCAGGGGCTGCACGC	0.682												
ELAVL4	1996	broad.mit.edu	37	1	50610767	50610767	+	Missense_Mutation	SNP	G	G	A	rs116391279	by1000genomes	TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:50610767G>A	uc001csb.2	+	1	416	c.148G>A	c.(148-150)Gtc>Atc	p.V50I	ELAVL4_uc001cry.3_Missense_Mutation_p.V53I|ELAVL4_uc001crz.3_Missense_Mutation_p.V50I|ELAVL4_uc001csa.3_Missense_Mutation_p.V67I|ELAVL4_uc001csc.3_Missense_Mutation_p.V50I|ELAVL4_uc009vyu.3_Missense_Mutation_p.V55I|ELAVL4_uc010omz.2_Missense_Mutation_p.V55I	NM_021952	NP_068771	P26378	ELAV4_HUMAN	Homo sapiens ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) (ELAVL4), transcript variant 1, mRNA.	50	RRM 1.				mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding	p.I49I(1)		NS(1)|central_nervous_system(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(5)|liver(2)|lung(5)|ovary(1)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(3)	32						CAACCTCATCGTCAACTATTT	0.448												
DMRTB1	63948	broad.mit.edu	37	1	53925199	53925199	+	Nonsense_Mutation	SNP	G	G	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:53925199G>T	uc001cvq.1	+	0	128	c.73G>T	c.(73-75)Gga>Tga	p.G25*		NM_033067	NP_149056	Q96MA1	DMRTB_HUMAN	Homo sapiens DMRT-like family B with proline-rich C-terminal, 1 (DMRTB1), mRNA.	25					sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(3)|lung(5)|ovary(1)|skin(1)	10						GCCCGTCAAGGGACACGCGGG	0.602												
ARHGAP29	9411	broad.mit.edu	37	1	94650593	94650594	+	Frame_Shift_Ins	INS	-	-	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:94650593_94650594insT	uc001dqj.4	-	17	2312_2313	c.1943_1944insA	c.(1942-1944)aagfs	p.K648fs	ARHGAP29_uc009wdq.1_Non-coding_Transcript|ARHGAP29_uc001dqk.3_Frame_Shift_Ins_p.K214fs	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	Homo sapiens Rho GTPase activating protein 29 (ARHGAP29), mRNA.	648					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity	p.R647Q(1)		NS(1)|breast(5)|endometrium(6)|kidney(2)|large_intestine(9)|lung(19)|ovary(1)|skin(8)|upper_aerodigestive_tract(1)|urinary_tract(2)	54		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TTTCCAAACACTTTCGATGACA	0.361												
CD2	914	broad.mit.edu	37	1	117311354	117311354	+	Frame_Shift_Del	DEL	A	A	-			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:117311354delA	uc001egu.4	+	4	1034	c.1005delA	c.(1003-1005)ccafs	p.P335fs		NM_001767	NP_001758	P06729	CD2_HUMAN	Homo sapiens CD2 molecule (CD2), mRNA.	335	Pro-rich.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			NS(1)|breast(2)|large_intestine(3)|liver(1)|lung(8)|skin(2)|stomach(1)	18	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	GAGTTCAGCCAAAACCTCCCC	0.517												
GPATCH4	54865	broad.mit.edu	37	1	156565503	156565504	+	Frame_Shift_Ins	INS	-	-	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:156565503_156565504insT	uc001fpm.3	-	7	677_678	c.629_630insA	c.(628-630)aagfs	p.K210fs	APOA1BP_uc010php.1_Intron|GPATCH4_uc001fpl.3_Frame_Shift_Ins_p.K205fs	NM_015590	NP_056405	Q5T3I0	GPTC4_HUMAN	Homo sapiens G patch domain containing 4 (GPATCH4), transcript variant 1, mRNA.	205						intracellular	nucleic acid binding			autonomic_ganglia(1)|breast(2)|kidney(1)|large_intestine(1)|lung(5)|ovary(1)|prostate(2)|skin(3)|stomach(1)	17	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TTTTCTTTTTCTTTTTTTTGGG	0.535												
OR10R2	343406	broad.mit.edu	37	1	158450132	158450132	+	Silent	SNP	T	T	C			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:158450132T>C	uc010pik.2	+	0	465	c.465T>C	c.(463-465)ctT>ctC	p.L155L	AK057554_uc001fso.1_Non-coding_Transcript	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	Homo sapiens olfactory receptor, family 10, subfamily R, member 2 (OR10R2), mRNA.	155					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|endometrium(1)|kidney(1)|large_intestine(2)|liver(1)|lung(26)|pancreas(3)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)	41	all_hematologic(112;0.0378)					ACCCCACTCTTATGAGCTGGC	0.473												
RCSD1	92241	broad.mit.edu	37	1	167667016	167667016	+	Silent	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:167667016C>T	uc001gem.3	+	5	1342	c.1155C>T	c.(1153-1155)acC>acT	p.T385T	RCSD1_uc010pli.2_Silent_p.T355T	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	Homo sapiens RCSD domain containing 1 (RCSD1), mRNA.	385										NS(1)|breast(3)|central_nervous_system(2)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(6)|lung(2)|ovary(2)|prostate(2)|skin(2)|urinary_tract(1)	24	all_hematologic(923;0.215)					GCCCCCAGACCGGCCCTGCCC	0.642												
NME7	29922	broad.mit.edu	37	1	169138771	169138771	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:169138771G>A	uc001gfu.3	-	10	1250	c.1012C>T	c.(1012-1014)Cct>Tct	p.P338S	NME7_uc001gft.3_Missense_Mutation_p.P302S|NME7_uc010plq.2_Non-coding_Transcript	NM_013330	NP_932076	Q9Y5B8	NDK7_HUMAN	Homo sapiens non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase) (NME7), transcript variant 1, mRNA.	338					CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	centrosome	ATP binding|metal ion binding|nucleoside diphosphate kinase activity			central_nervous_system(1)|kidney(1)|large_intestine(5)|lung(8)|skin(1)	16	all_hematologic(923;0.208)					AGAGTTCCAGGGCGTAAATGC	0.368												
LAMC1	3915	broad.mit.edu	37	1	183111900	183111900	+	Missense_Mutation	SNP	A	A	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:183111900A>G	uc001gpy.4	+	27	5062	c.4805A>G	c.(4804-4806)aAc>aGc	p.N1602S		NM_002293	NP_002284	P11047	LAMC1_HUMAN	Homo sapiens laminin, gamma 1 (formerly LAMB2) (LAMC1), mRNA.	1602	Domain II and I.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			NS(2)|breast(5)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(17)|lung(27)|ovary(3)|prostate(2)|skin(3)|upper_aerodigestive_tract(3)	76					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGCTGCTTCAACACCCCGTCC	0.527												
HMCN1	83872	broad.mit.edu	37	1	186107024	186107024	+	Missense_Mutation	SNP	A	A	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:186107024A>T	uc001grq.1	+	88	14073	c.13844A>T	c.(13843-13845)aAt>aTt	p.N4615I	MIR548F1_uc021pgf.1_Intron|HMCN1_uc001grs.1_Missense_Mutation_p.N184I	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	Homo sapiens hemicentin 1 (HMCN1), mRNA.	4615	TSP type-1 2.				response to stimulus|visual perception	basement membrane	calcium ion binding			NS(2)|autonomic_ganglia(1)|breast(10)|central_nervous_system(2)|cervix(1)|endometrium(28)|haematopoietic_and_lymphoid_tissue(4)|kidney(13)|large_intestine(58)|liver(3)|lung(101)|ovary(23)|pancreas(4)|prostate(20)|skin(8)|stomach(1)|upper_aerodigestive_tract(11)|urinary_tract(18)	308						ACTTGCAATAATCCATCAGTT	0.493												
LGALS8	3964	broad.mit.edu	37	1	236711404	236711404	+	Missense_Mutation	SNP	T	T	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr1:236711404T>A	uc001hxz.2	+	10	1278	c.897T>A	c.(895-897)agT>agA	p.S299R	LGALS8_uc001hxw.2_Missense_Mutation_p.S341R|LGALS8_uc001hxy.2_Missense_Mutation_p.S341R|LGALS8_uc009xgg.2_Non-coding_Transcript|LGALS8_uc001hya.2_Missense_Mutation_p.S299R|LGALS8_uc001hyc.2_Missense_Mutation_p.S282R	NM_201543	NP_963838	O00214	LEG8_HUMAN	Homo sapiens lectin, galactoside-binding, soluble, 8 (LGALS8), transcript variant 2, mRNA.	299	Galectin 2.					cytoplasm|extracellular space	sugar binding			kidney(1)|large_intestine(5)|lung(6)|ovary(1)|prostate(1)|skin(1)|stomach(5)	20	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.0253)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			AGCTCAGCAGTATTGACACGC	0.408												
MYO3A	53904	broad.mit.edu	37	10	26312961	26312961	+	Missense_Mutation	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr10:26312961C>T	uc001isn.2	+	8	1102	c.742C>T	c.(742-744)Cca>Tca	p.P248S	MYO3A_uc009xko.1_Missense_Mutation_p.P248S|MYO3A_uc009xkp.1_Non-coding_Transcript|MYO3A_uc009xkq.1_Missense_Mutation_p.P248S	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	Homo sapiens myosin IIIA (MYO3A), mRNA.	248	Protein kinase.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			NS(2)|breast(9)|central_nervous_system(3)|endometrium(9)|kidney(10)|large_intestine(28)|liver(1)|lung(46)|ovary(11)|pancreas(1)|prostate(6)|skin(11)|stomach(6)|upper_aerodigestive_tract(1)|urinary_tract(2)	146						GAATCCACCCCCAAAACTAAG	0.388												
GDF10	2662	broad.mit.edu	37	10	48429323	48429323	+	Missense_Mutation	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr10:48429323C>T	uc001jfb.3	-	1	991	c.563G>A	c.(562-564)cGc>cAc	p.R188H	GDF10_uc009xnp.3_Missense_Mutation_p.R187H|GDF10_uc009xnq.2_Missense_Mutation_p.R188H	NM_004962	NP_004953	P55107	BMP3B_HUMAN	Homo sapiens growth differentiation factor 10 (GDF10), mRNA.	188					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(4)|lung(20)|skin(1)	31						CATGGCCCCGCGGAGTAGCCC	0.731												
ZNF195	7748	broad.mit.edu	37	11	3381676	3381676	+	Missense_Mutation	SNP	C	C	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr11:3381676C>G	uc001lxt.3	-	5	744	c.562G>C	c.(562-564)Gac>Cac	p.D188H	ZNF195_uc010qxr.2_Missense_Mutation_p.D169H|ZNF195_uc009ydz.3_Missense_Mutation_p.D143H|ZNF195_uc001lxu.3_Missense_Mutation_p.D120H|ZNF195_uc001lxv.3_Missense_Mutation_p.D165H|ZNF195_uc021qck.1_Missense_Mutation_p.D120H|ZNF195_uc001lxs.3_Missense_Mutation_p.D116H	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	Homo sapiens zinc finger protein 195 (ZNF195), transcript variant 1, mRNA.	188	Spacer.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(4)|kidney(1)|large_intestine(2)|lung(9)|ovary(1)	17		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		CTTTCCCAGTCTTTCCTTAAA	0.343												
CD44	960	broad.mit.edu	37	11	35226085	35226085	+	Nonsense_Mutation	SNP	G	G	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr11:35226085G>T	uc001mvu.3	+	9	1614	c.1180G>T	c.(1180-1182)Gaa>Taa	p.E394*	CD44_uc021qfw.1_Intron|CD44_uc001mvv.3_Nonsense_Mutation_p.E351*|CD44_uc001mvw.3_Intron|CD44_uc001mwc.4_Intron|CD44_uc001mvx.3_Intron|CD44_uc010rer.2_Intron|CD44_uc001mvy.3_Intron|CD44_uc009ykh.3_Intron|CD44_uc010reu.2_Intron|CD44_uc010res.2_Intron|CD44_uc010ret.2_Intron	NM_000610	NP_000601	P16070	CD44_HUMAN	Homo sapiens CD44 molecule (Indian blood group) (CD44), transcript variant 1, mRNA.	394	Stem.				cell-cell adhesion|cell-matrix adhesion|interferon-gamma-mediated signaling pathway|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation	cell surface|Golgi apparatus|integral to plasma membrane	collagen binding|hyaluronic acid binding|receptor activity			cervix(1)|endometrium(1)|kidney(2)|large_intestine(4)|lung(13)|pancreas(1)|skin(1)	23	all_cancers(35;0.212)|all_lung(20;0.0874)|all_epithelial(35;0.112)	all_hematologic(20;0.107)	STAD - Stomach adenocarcinoma(6;0.00731)		Hyaluronidase(DB00070)	TAGTACAACGGAAGAAACAGC	0.453												
PTPRJ	5795	broad.mit.edu	37	11	48134462	48134462	+	Silent	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr11:48134462C>T	uc001ngp.4	+	2	634	c.279C>T	c.(277-279)aaC>aaT	p.N93N	PTPRJ_uc001ngo.4_Silent_p.N93N	NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	Homo sapiens protein tyrosine phosphatase, receptor type, J (PTPRJ), transcript variant 1, mRNA.	93					contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|endometrium(7)|kidney(7)|large_intestine(5)|lung(15)|ovary(1)|prostate(2)|skin(6)|stomach(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	52						CTGGAGCCAACGATAGTTTAA	0.453												
SLC29A2	3177	broad.mit.edu	37	11	66133408	66133409	+	Missense_Mutation	DNP	CA	CA	AC			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr11:66133408_66133409CA>AC	uc001oht.3	-	10	1288	c.1059_splice	c.e10+1	p.W353_splice	SLC29A2_uc009yrf.3_Splice_Site_p.W233_splice|SLC29A2_uc001ohu.3_Splice_Site_p.W353_splice|SLC29A2_uc001ohv.3_Splice_Site_p.A309_splice|AX747485_uc001ohw.1_5'Flank	NM_001532	NP_001523	Q14542	S29A2_HUMAN	Homo sapiens solute carrier family 29 (nucleoside transporters), member 2 (SLC29A2), mRNA.	353					cell proliferation|nucleobase, nucleoside and nucleotide metabolic process	basolateral plasma membrane|integral to plasma membrane|nuclear membrane|nucleolus	nucleoside transmembrane transporter activity	p.W353S(1)		breast(1)|kidney(2)|large_intestine(2)|lung(1)|ovary(2)|prostate(1)|upper_aerodigestive_tract(1)	10						TGTGCTTACCCACAGGAAGTAA	0.535												
C11orf82	220042	broad.mit.edu	37	11	82639902	82639905	+	Frame_Shift_Del	DEL	CAAA	CAAA	-			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr11:82639902_82639905delCAAA	uc001ozt.3	+	3	441_444	c.197_200delCAAA	c.(196-201)tcaaacfs	p.S66fs	C11orf82_uc010rsr.2_5'UTR|C11orf82_uc010rss.2_Intron|C11orf82_uc009yvd.2_Frame_Shift_Del_p.S66fs	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	Homo sapiens chromosome 11 open reading frame 82 (C11orf82), mRNA.	66					apoptosis|cell cycle arrest	cytoplasm|nucleus				haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(7)|lung(17)|ovary(3)|prostate(1)|skin(1)|urinary_tract(1)	33						GTTGCAGAATCAAACAAATTGTTT	0.343												
ROBO4	54538	broad.mit.edu	37	11	124764984	124764984	+	Missense_Mutation	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr11:124764984C>T	uc001qbg.3	-	6	1282	c.1142G>A	c.(1141-1143)gGc>gAc	p.G381D	ROBO4_uc010sas.2_Missense_Mutation_p.G236D|ROBO4_uc001qbh.2_Missense_Mutation_p.G271D|ROBO4_uc001qbi.3_5'Flank|ROBO4_uc010sat.1_5'UTR	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	Homo sapiens roundabout, axon guidance receptor, homolog 4 (Drosophila) (ROBO4), mRNA.	381	Fibronectin type-III 2.				angiogenesis|cell differentiation	integral to membrane	receptor activity	p.R380R(1)		NS(2)|breast(1)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(11)|lung(42)|ovary(1)|prostate(4)|skin(5)|urinary_tract(3)	76	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		TACCTGGTAGCCACGGATGAT	0.542												
VEZT	55591	broad.mit.edu	37	12	95660405	95660405	+	Missense_Mutation	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr12:95660405C>T	uc001tdz.2	+	4	812	c.707C>T	c.(706-708)aCa>aTa	p.T236I	VEZT_uc001tds.3_Missense_Mutation_p.T188I|VEZT_uc001tdv.3_Missense_Mutation_p.T205I|VEZT_uc009zsy.1_Missense_Mutation_p.T78I|VEZT_uc001tdr.2_Missense_Mutation_p.T78I|VEZT_uc001tdt.2_Missense_Mutation_p.T188I|VEZT_uc009zsz.1_Missense_Mutation_p.T236I|VEZT_uc001tdw.1_Missense_Mutation_p.T188I|VEZT_uc009zta.1_Missense_Mutation_p.T188I	NM_017599	NP_060069	Q9HBM0	VEZA_HUMAN	Homo sapiens vezatin, adherens junctions transmembrane protein (VEZT), transcript variant 1, mRNA.	236						acrosomal vesicle|adherens junction|integral to membrane|nucleus				endometrium(2)|kidney(3)|large_intestine(1)|lung(14)|ovary(2)|upper_aerodigestive_tract(1)	23						AGAGGATTTACACTGTGAGTT	0.313												
STAB2	55576	broad.mit.edu	37	12	104147041	104147041	+	Silent	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr12:104147041G>A	uc001tjw.3	+	60	6810	c.6624G>A	c.(6622-6624)caG>caA	p.Q2208Q	STAB2_uc009zug.3_Non-coding_Transcript	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	Homo sapiens stabilin 2 (STAB2), mRNA.	2208	Link.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			NS(4)|breast(7)|central_nervous_system(1)|cervix(1)|endometrium(15)|kidney(11)|large_intestine(26)|lung(77)|ovary(10)|pancreas(1)|prostate(5)|skin(14)|stomach(2)	174						CACTGGGCCAGTATAAGCTGA	0.567												
ABCB9	23457	broad.mit.edu	37	12	123434439	123434439	+	Missense_Mutation	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr12:123434439C>T	uc001udm.4	-	3	1053	c.743G>A	c.(742-744)gGc>gAc	p.G248D	ABCB9_uc021rfo.1_Missense_Mutation_p.G248D|ABCB9_uc021rfp.1_Missense_Mutation_p.G248D|ABCB9_uc001udo.4_Missense_Mutation_p.G248D|ABCB9_uc010taj.2_Missense_Mutation_p.G248D|ABCB9_uc001udq.3_Missense_Mutation_p.G30D|ABCB9_uc021rfq.1_Missense_Mutation_p.G248D|ABCB9_uc001udr.3_Missense_Mutation_p.G248D	NM_019625	NP_062571	Q9NP78	ABCB9_HUMAN	Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9 (ABCB9), transcript variant 1, mRNA.	248	ABC transmembrane type-1.				positive regulation of T cell mediated cytotoxicity|protein transport	lysosomal membrane|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|protein homodimerization activity|TAP1 binding|TAP2 binding|tapasin binding			central_nervous_system(1)|endometrium(2)|large_intestine(2)|lung(9)|ovary(2)|prostate(1)|skin(1)	18	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.84e-05)|Epithelial(86;0.000152)|BRCA - Breast invasive adenocarcinoma(302;0.111)		GGTAAAAATGCCGCCCCGAAT	0.522												
NCOR2	9612	broad.mit.edu	37	12	124857156	124857156	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr12:124857156G>A	uc021rga.1	-	20	2336	c.2219_splice	c.e20-1	p.A740_splice	NCOR2_uc021rgb.1_Splice_Site_p.A723_splice|NCOR2_uc010tbb.2_Splice_Site_p.A740_splice|NCOR2_uc010tbc.2_Splice_Site_p.A722_splice|NCOR2_uc021rgc.1_Splice_Site_p.A722_splice|NCOR2_uc010tba.2_Splice_Site_p.A740_splice|NCOR2_uc001ugj.1_Splice_Site_p.A740_splice	NM_006312	NP_006303	Q9Y618	NCOR2_HUMAN	Homo sapiens nuclear receptor corepressor 2 (NCOR2), transcript variant 1, mRNA.	740					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			breast(5)|central_nervous_system(2)|endometrium(7)|kidney(5)|large_intestine(7)|lung(28)|ovary(3)|pancreas(1)|prostate(3)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(2)	69	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GTTGACAGTGGCTGTGCAGGG	0.647												
PIWIL1	9271	broad.mit.edu	37	12	130830969	130830969	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr12:130830969G>A	uc001uik.3	+	4	642	c.371G>A	c.(370-372)cGt>cAt	p.R124H	PIWIL1_uc001uij.2_Missense_Mutation_p.R124H	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	Homo sapiens piwi-like 1 (Drosophila) (PIWIL1), transcript variant 1, mRNA.	124					gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			breast(6)|cervix(1)|endometrium(2)|kidney(4)|large_intestine(8)|lung(26)|ovary(2)|prostate(4)|skin(3)|urinary_tract(1)	57	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		CTGACATCCCGTCCCCAGTGG	0.393												
ENOX1	55068	broad.mit.edu	37	13	43788215	43788215	+	Missense_Mutation	SNP	G	G	A	rs146880051		TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr13:43788215G>A	uc001uza.4	-	16	2143	c.1843C>T	c.(1843-1845)Cgc>Tgc	p.R615C	ENOX1_uc001uzc.4_Missense_Mutation_p.R615C|ENOX1_uc001uzb.4_Missense_Mutation_p.R615C	NM_001127615	NP_060463	Q8TC92	ENOX1_HUMAN	Homo sapiens ecto-NOX disulfide-thiol exchanger 1 (ENOX1), transcript variant 2, mRNA.	615					electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			breast(1)|endometrium(3)|large_intestine(7)|lung(18)|pancreas(2)|prostate(1)|skin(1)|urinary_tract(1)	34		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		TTGAACATGCGTGGCAGCCTC	0.433												
HEATR5A	25938	broad.mit.edu	37	14	31790820	31790820	+	Missense_Mutation	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr14:31790820C>T	uc001wrf.4	-	24	4039	c.3854G>A	c.(3853-3855)aGt>aAt	p.S1285N	HEATR5A_uc010ami.3_Missense_Mutation_p.S890N	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	Homo sapiens HEAT repeat containing 5A (HEATR5A), mRNA.	1279							binding			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(3)|large_intestine(5)|lung(13)|ovary(1)	26	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		GAGCTGGTCACTGTGATCTGT	0.408												
FOS	2353	broad.mit.edu	37	14	75745716	75745716	+	Missense_Mutation	SNP	G	G	C			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr14:75745716G>C	uc001xrn.3	+	0	236	c.31G>C	c.(31-33)Gag>Cag	p.E11Q	FOS_uc010tva.2_Missense_Mutation_p.E11Q|FOS_uc010asi.3_5'Flank	NM_005252	NP_005243	P01100	FOS_HUMAN	Homo sapiens FBJ murine osteosarcoma viral oncogene homolog (FOS), mRNA.	11					cellular response to reactive oxygen species|DNA methylation|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|SMAD protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|transforming growth factor beta receptor signaling pathway		protein dimerization activity|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			central_nervous_system(1)|large_intestine(1)|lung(5)|ovary(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	12		all_lung(585;0.0138)|all_epithelial(191;0.0263)|all_neural(303;0.112)		BRCA - Breast invasive adenocarcinoma(234;0.0117)		CGCAGACTACGAGGCGTCATC	0.662												
KCNK13	56659	broad.mit.edu	37	14	90650893	90650893	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr14:90650893G>A	uc001xye.1	+	1	1215	c.773G>A	c.(772-774)cGc>cAc	p.R258H		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	Homo sapiens potassium channel, subfamily K, member 13 (KCNK13), mRNA.	258						integral to membrane	potassium channel activity|voltage-gated ion channel activity			haematopoietic_and_lymphoid_tissue(1)|large_intestine(7)|lung(12)|prostate(1)|skin(4)	25		all_cancers(154;0.186)				GGCCTCTATCGCTTTGCCAAC	0.493												
NBEAP1	606	broad.mit.edu	37	15	20874887	20874887	+	Missense_Mutation	SNP	C	C	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr15:20874887C>G	uc010tze.1	-	2	458	c.251G>C	c.(250-252)gGa>gCa	p.G84A	NBEAP1_uc010tzd.2_Non-coding_Transcript					Homo sapiens neurobeachin pseudogene 1 (NBEAP1), non-coding RNA.																		AATAACTGTTCCTATTCTGCA	0.333												
RYR3	6263	broad.mit.edu	37	15	34014993	34014993	+	Missense_Mutation	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr15:34014993C>T	uc001zhi.3	+	43	6767	c.6697C>T	c.(6697-6699)Cgg>Tgg	p.R2233W	RYR3_uc010bar.3_Missense_Mutation_p.R2233W	NM_001036	NP_001027	Q15413	RYR3_HUMAN	Homo sapiens ryanodine receptor 3 (RYR3), transcript variant 1, mRNA.	2233	4 X approximate repeats.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			NS(3)|breast(9)|central_nervous_system(8)|cervix(2)|endometrium(29)|haematopoietic_and_lymphoid_tissue(2)|kidney(18)|large_intestine(55)|lung(148)|ovary(7)|pancreas(1)|prostate(13)|skin(4)|stomach(1)|upper_aerodigestive_tract(8)|urinary_tract(3)	311		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CCCGGCCCTGCGGGGTGAGGG	0.587												
CILP	8483	broad.mit.edu	37	15	65495753	65495753	+	Silent	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr15:65495753G>A	uc002aon.2	-	6	1156	c.975C>T	c.(973-975)agC>agT	p.S325S		NM_003613	NP_003604	O75339	CILP1_HUMAN	Homo sapiens cartilage intermediate layer protein, nucleotide pyrophosphohydrolase (CILP), mRNA.	325	Ig-like C2-type.				negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				breast(5)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(14)|lung(17)|ovary(4)|pancreas(2)|prostate(4)|skin(2)|urinary_tract(1)	55						ACAGAGACACGCTCTGCCCAG	0.498												
SCAMP2	10066	broad.mit.edu	37	15	75137888	75137888	+	Missense_Mutation	SNP	T	T	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr15:75137888T>G	uc002azb.1	-	7	855	c.781A>C	c.(781-783)Ata>Cta	p.I261L	ULK3_uc010ulp.1_5'Flank|ULK3_uc010ulq.1_5'Flank|ULK3_uc010ulr.1_5'Flank|ULK3_uc010bkf.1_5'Flank|ULK3_uc002ayv.2_5'Flank|ULK3_uc010uls.1_5'Flank|ULK3_uc010ult.1_5'Flank|ULK3_uc010ulu.1_5'Flank|SCAMP2_uc002aza.1_Missense_Mutation_p.I111L	NM_005697	NP_005688	O15127	SCAM2_HUMAN	Homo sapiens secretory carrier membrane protein 2 (SCAMP2), mRNA.	261					post-Golgi vesicle-mediated transport|protein transport	integral to membrane|nucleus|recycling endosome membrane|trans-Golgi network membrane	protein binding			kidney(1)|large_intestine(1)|lung(3)|ovary(1)|pancreas(1)|prostate(1)|skin(1)	9						ATGACTGATATGGCCAGGGAA	0.557												
AK302879	0	broad.mit.edu	37	15	76075166	76075166	+	Silent	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr15:76075166C>T	uc010umm.1	+	9	806	c.729C>T	c.(727-729)agC>agT	p.S243S	DNM1P35_uc021sqp.1_Intron|DQ582939_uc002bba.1_5'Flank|DQ582208_uc021sqs.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		CTCAGCTGAGCCCCCATCCCC	0.572												
ADCY9	115	broad.mit.edu	37	16	4033331	4033331	+	Silent	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr16:4033331C>T	uc002cvx.3	-	6	2960	c.2421G>A	c.(2419-2421)ctG>ctA	p.L807L		NM_001116	NP_001107	O60503	ADCY9_HUMAN	Homo sapiens adenylate cyclase 9 (ADCY9), mRNA.	807					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			breast(4)|central_nervous_system(1)|cervix(2)|endometrium(5)|kidney(3)|large_intestine(11)|lung(9)|ovary(5)|prostate(4)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	47						CCTCGTACTTCAGGAAGCAGG	0.637											OREG0023573	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
BC068290	0	broad.mit.edu	37	16	33784672	33784672	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr16:33784672G>A	uc010vgb.2	+	1	81	c.61G>A	c.(61-63)Gtt>Att	p.V21I						SubName: Full=Uncharacterized protein;																		CATCTTCAACGTTGTGTACTA	0.637												
RBL2	5934	broad.mit.edu	37	16	53500990	53500990	+	Silent	SNP	G	G	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr16:53500990G>T	uc002ehi.4	+	13	2002	c.1884G>T	c.(1882-1884)ctG>ctT	p.L628L	RBL2_uc010vgv.1_Silent_p.L554L|RBL2_uc002ehj.3_Silent_p.L338L|RBL2_uc010vgw.2_Silent_p.L412L	NM_005611	NP_005602	Q08999	RBL2_HUMAN	Homo sapiens retinoblastoma-like 2 (p130) (RBL2), mRNA.	628	Pocket; binds E1A.|Spacer.				cell cycle|chromatin modification|regulation of cell cycle|regulation of lipid kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			breast(3)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(8)|lung(17)|ovary(4)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	45						CTCAGAACCTGGAAAGGGCAG	0.423												
NOB1	28987	broad.mit.edu	37	16	69782153	69782153	+	Missense_Mutation	SNP	C	C	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr16:69782153C>A	uc002exs.3	-	6	822	c.806G>T	c.(805-807)cGc>cTc	p.R269L		NM_014062	NP_054781	Q9ULX3	NOB1_HUMAN	Homo sapiens NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) (NOB1), mRNA.	269						nucleus	metal ion binding|protein binding			breast(2)|cervix(1)|endometrium(1)|large_intestine(1)|lung(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	11						GCCATGGCAGCGCAAGATGTA	0.522												
CLDN7	1366	broad.mit.edu	37	17	7163801	7163801	+	Silent	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr17:7163801G>A	uc002gfm.4	-	3	1430	c.528C>T	c.(526-528)atC>atT	p.I176I	CLDN7_uc010cmc.3_3'UTR|CLDN7_uc002gfn.4_Silent_p.I176I	NM_001307	NP_001298	O95471	CLD7_HUMAN	Homo sapiens claudin 7 (CLDN7), transcript variant 1, mRNA.	176					calcium-independent cell-cell adhesion	integral to membrane|lateral plasma membrane|tight junction	identical protein binding|structural molecule activity			kidney(1)|large_intestine(2)|lung(1)|ovary(1)|prostate(1)	6						CACCTCCCAGGATGACTAGGG	0.572												
CDRT15	146822	broad.mit.edu	37	17	14139674	14139674	+	Silent	SNP	G	G	A	rs141627800		TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr17:14139674G>A	uc010vvu.2	-	1	336	c.336C>T	c.(334-336)gcC>gcT	p.A112A		NM_001007530	NP_001007531	Q96T59	CDRTF_HUMAN	Homo sapiens CMT1A duplicated region transcript 15 (CDRT15), mRNA.	112										endometrium(2)|large_intestine(1)|lung(2)|prostate(1)	6				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		TCTCTGGAGGGGCCTCTTCCC	0.607												
NF1	4763	broad.mit.edu	37	17	29508438	29508438	+	Splice_Site	SNP	A	A	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr17:29508438A>G	uc002hgg.3	+	6	970	c.587_splice	c.e6-2	p.E196_splice	NF1_uc002hge.2_Splice_Site_p.E196_splice|NF1_uc002hgf.2_Splice_Site_p.E196_splice|NF1_uc002hgh.3_Splice_Site_p.E196_splice|NF1_uc010csn.2_Splice_Site_p.E56_splice	NM_001042492	NP_001035957	P21359	NF1_HUMAN	Homo sapiens neurofibromin 1 (NF1), transcript variant 1, mRNA.	196					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.0?(8)|p.?(4)	NF1/ACCN1(2)	autonomic_ganglia(12)|breast(11)|central_nervous_system(72)|cervix(6)|endometrium(12)|haematopoietic_and_lymphoid_tissue(59)|kidney(9)|large_intestine(39)|liver(1)|lung(80)|ovary(20)|pancreas(2)|prostate(2)|skin(8)|soft_tissue(249)|stomach(2)|thyroid(1)|upper_aerodigestive_tract(5)|urinary_tract(9)	599		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TGTTTTTTCCAGAAACAGCAT	0.299			"""D, Mis, N, F, S, O"""		"""neurofibroma, glioma"""	"""neurofibroma, glioma"""			Neurofibromatosis, type 1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)		
TADA2A	6871	broad.mit.edu	37	17	35834667	35834667	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr17:35834667G>A	uc002hnv.3	+	14	1448	c.1079G>A	c.(1078-1080)cGg>cAg	p.R360Q	TADA2A_uc002hnt.3_Missense_Mutation_p.R360Q|TADA2A_uc002hnw.3_Missense_Mutation_p.R259Q	NM_001488	NP_001479	O75478	TAD2A_HUMAN	Homo sapiens transcriptional adaptor 2A (TADA2A), transcript variant 1, mRNA.	360	SWIRM.				histone H3 acetylation|transcription from RNA polymerase II promoter	chromosome|PCAF complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity|zinc ion binding			breast(4)|cervix(1)|endometrium(1)|kidney(2)|lung(3)|prostate(1)|skin(1)	13						ATAGGTAGACGGAGTGCACCA	0.453												
KRT12	3859	broad.mit.edu	37	17	39021192	39021192	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr17:39021192G>A	uc002hvk.2	-	2	697	c.673C>T	c.(673-675)Cgc>Tgc	p.R225C		NM_000223	NP_000214	Q99456	K1C12_HUMAN	Homo sapiens keratin 12 (KRT12), mRNA.	225	Coil 1B.|Rod.				visual perception	intermediate filament	structural molecule activity	p.R225C(4)		central_nervous_system(1)|endometrium(1)|large_intestine(3)|liver(1)|lung(5)|ovary(2)|upper_aerodigestive_tract(2)	15		Breast(137;0.000301)				ACGCCCTGGCGCAGGGCCAGT	0.552												
TANC2	26115	broad.mit.edu	37	17	61466072	61466072	+	Missense_Mutation	SNP	C	C	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr17:61466072C>G	uc002jal.4	+	13	2569	c.2546C>G	c.(2545-2547)tCc>tGc	p.S849C	TANC2_uc010wpe.2_Missense_Mutation_p.S759C|TANC2_uc002jan.1_5'UTR|TANC2_uc002jao.4_5'Flank|TANC2_uc002jam.1_Missense_Mutation_p.S216C	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	Homo sapiens tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 (TANC2), mRNA.	849							binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(15)|ovary(2)|upper_aerodigestive_tract(3)	44						GAAGGTCTTTCCATGGCACTG	0.323												
SERPINB2	5273	broad.mit.edu	37	18	61585321	61585321	+	Silent	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr18:61585321G>A	uc010xev.2	+	3	447	c.357G>A	c.(355-357)acG>acA	p.T119T	SERPINB2_uc010xew.2_Silent_p.T119T	NM_005024	NP_005015	P05120	PAI2_HUMAN	Homo sapiens serpin peptidase inhibitor, clade B (ovalbumin), member 10 (SERPINB10), mRNA.	134					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity	p.T119T(1)		NS(1)|central_nervous_system(2)|endometrium(4)|large_intestine(7)|liver(1)|lung(12)|prostate(2)|skin(2)|stomach(1)	32		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	GAGAGAAAACGTATGCATTTC	0.348												
GZMM	3004	broad.mit.edu	37	19	547333	547333	+	Missense_Mutation	SNP	C	C	T	rs148691419	byFrequency	TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr19:547333C>T	uc002low.1	+	1	154	c.109C>T	c.(109-111)Cgc>Tgc	p.R37C		NM_005317	NP_005308	P51124	GRAM_HUMAN	Homo sapiens granzyme M (lymphocyte met-ase 1) (GZMM), mRNA.	37	Peptidase S1.				apoptosis|cytolysis|innate immune response|proteolysis	extracellular region	serine-type endopeptidase activity			endometrium(1)|large_intestine(1)|prostate(1)	3		all_cancers(10;1.94e-35)|all_epithelial(18;5.94e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCCCACTCGCGCCCGTACAT	0.662												
FSD1	79187	broad.mit.edu	37	19	4323057	4323057	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr19:4323057G>A	uc002lzy.2	+	10	1267	c.1114G>A	c.(1114-1116)Ggc>Agc	p.G372S	FSD1_uc002maa.2_Missense_Mutation_p.G185S	NM_024333	NP_077309	Q9BTV5	FSD1_HUMAN	Homo sapiens fibronectin type III and SPRY domain containing 1 (FSD1), mRNA.	372	B30.2/SPRY.				cell division|mitosis	cleavage furrow|microtubule|microtubule organizing center|nucleus				breast(2)|cervix(1)|endometrium(1)|large_intestine(4)|liver(1)|lung(8)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	21				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.034)|STAD - Stomach adenocarcinoma(1328;0.18)		GTTCGGCGTGGGCGTGGCCTA	0.687												
ZNF799	90576	broad.mit.edu	37	19	12501446	12501446	+	Missense_Mutation	SNP	T	T	C			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr19:12501446T>C	uc010dyt.3	-	3	1970	c.1766A>G	c.(1765-1767)gAa>gGa	p.E589G	ZNF799_uc002mts.4_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	Homo sapiens zinc finger protein 799 (ZNF799), mRNA.	589					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|kidney(2)|large_intestine(4)|lung(4)|ovary(2)|prostate(2)|skin(2)	19						TTCCTTACATTCATACGGGTT	0.413												
KPTN	11133	broad.mit.edu	37	19	47979804	47979804	+	Silent	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr19:47979804G>A	uc002pgy.3	-	10	1271	c.1167C>T	c.(1165-1167)ggC>ggT	p.G389G	KPTN_uc010xys.2_Non-coding_Transcript	NM_007059	NP_008990	Q9Y664	KPTN_HUMAN	Homo sapiens kaptin (actin binding protein) (KPTN), mRNA.	389					actin filament organization|cellular component movement|sensory perception of sound	actin cytoskeleton|growth cone|microtubule organizing center|nucleus|perinuclear region of cytoplasm|stereocilium	actin binding			breast(1)|lung(3)|ovary(2)|pancreas(2)	8		all_cancers(25;1.55e-10)|all_epithelial(76;3.4e-08)|all_lung(116;1.73e-07)|Lung NSC(112;3.95e-07)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		OV - Ovarian serous cystadenocarcinoma(262;0.000428)|all cancers(93;0.000631)|Epithelial(262;0.0153)|GBM - Glioblastoma multiforme(486;0.0694)		GGATGTGCACGCCCTTCAGGG	0.667												
TNNT1	7138	broad.mit.edu	37	19	55645562	55645562	+	Missense_Mutation	SNP	C	C	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr19:55645562C>G	uc002qjb.4	-	11	711	c.622G>C	c.(622-624)Gcc>Ccc	p.A208P	TNNT1_uc002qjc.4_Intron|TNNT1_uc002qje.4_Intron|TNNT1_uc002qjd.4_Intron	NM_003283	NP_003274	P13805	TNNT1_HUMAN	Homo sapiens troponin T type 1 (skeletal, slow) (TNNT1), transcript variant 1, mRNA.	208					muscle filament sliding|negative regulation of muscle contraction	cytosol|troponin complex	tropomyosin binding	p.A208P(2)|p.S207C(1)|p.S207S(1)		endometrium(2)|kidney(3)|lung(4)|ovary(1)	10			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.047)		GGCAGCCAGGCAGACCGGGCC	0.622												
LHCGR	3973	broad.mit.edu	37	2	48915481	48915481	+	Silent	SNP	C	C	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr2:48915481C>A	uc002rwu.4	-	10	1525	c.1455G>T	c.(1453-1455)ctG>ctT	p.L485L	STON1-GTF2A1L_uc021vhf.1_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	Homo sapiens luteinizing hormone/choriogonadotropin receptor (LHCGR), mRNA.	485					male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			NS(1)|breast(6)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(1)|large_intestine(5)|liver(1)|lung(23)|ovary(3)|pancreas(2)|prostate(1)|skin(4)|upper_aerodigestive_tract(2)	56		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	CAAGCATAATCAGAATGGCAT	0.453												
CKAP2L	150468	broad.mit.edu	37	2	113514209	113514209	+	Missense_Mutation	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr2:113514209C>T	uc002tie.2	-	3	818	c.739G>A	c.(739-741)Gga>Aga	p.G247R	CKAP2L_uc002tif.2_Intron|CKAP2L_uc010yxp.1_Missense_Mutation_p.G82R|CKAP2L_uc010yxq.1_Missense_Mutation_p.G82R	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	Homo sapiens cytoskeleton associated protein 2-like (CKAP2L), mRNA.	247						centrosome				breast(1)|cervix(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(4)|lung(15)|skin(1)|upper_aerodigestive_tract(1)	28						TGTGTTTCTCCAACAAATTGT	0.403												
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	C	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr2:114355998C>G	uc002tkh.3	+	4	674	c.616C>G	c.(616-618)Cac>Gac	p.H206D	WASH2P_uc002tka.3_Non-coding_Transcript|WASH2P_uc002tkd.3_Non-coding_Transcript					Homo sapiens WAS protein family homolog 2 pseudogene (WASH2P), non-coding RNA.																		CCAAGGTGGGCACTTGATGTC	0.612												
TRAK2	66008	broad.mit.edu	37	2	202250994	202250994	+	Missense_Mutation	SNP	G	G	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr2:202250994G>T	uc002uyb.4	-	13	2356	c.1910C>A	c.(1909-1911)cCa>cAa	p.P637Q		NM_015049	NP_055864	O60296	TRAK2_HUMAN	Homo sapiens trafficking protein, kinesin binding 2 (TRAK2), mRNA.	637				Missing (in Ref. 2).		early endosome|plasma membrane	GABA receptor binding	p.P637Q(2)		endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(6)|lung(12)|ovary(1)|skin(1)	23						CCCTGTTACTGGCTTGGATGT	0.418												
KRTAP19-5	337972	broad.mit.edu	37	21	31874370	31874370	+	Silent	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr21:31874370G>A	uc011ada.2	-	0	39	c.39C>T	c.(37-39)taC>taT	p.Y13Y		NM_181611	NP_853642	Q3LI72	KR195_HUMAN	Homo sapiens keratin associated protein 19-5 (KRTAP19-5), mRNA.	13						intermediate filament	protein binding			endometrium(1)|large_intestine(5)|lung(4)|pancreas(1)|prostate(1)	12						CTCCGTAGCCGTAGCCCAGGC	0.572												
KRTAP6-1	337966	broad.mit.edu	37	21	31986219	31986219	+	Missense_Mutation	SNP	C	C	T	rs146113466		TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr21:31986219C>T	uc002yop.3	-	0	5	c.5G>A	c.(4-6)tGt>tAt	p.C2Y	KRTAP20-1_uc011ade.2_5'Flank	NM_181602	NP_853633	Q3LI64	KRA61_HUMAN	Homo sapiens keratin associated protein 6-1 (KRTAP6-1), mRNA.	2						cytosol|intermediate filament				breast(2)|endometrium(1)|lung(7)	10						GTAGCTGCCACACATGGTGTT	0.547												
SBF1	6305	broad.mit.edu	37	22	50886843	50886843	+	Missense_Mutation	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr22:50886843C>T	uc003blh.3	-	37	5377	c.5182G>A	c.(5182-5184)Gca>Aca	p.A1728T	SBF1_uc003ble.3_Missense_Mutation_p.A192T|SBF1_uc011arx.2_Missense_Mutation_p.A1366T	NM_002972	NP_002963	O95248	MTMR5_HUMAN	Homo sapiens SET binding factor 1 (SBF1), mRNA.	1702					protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity			breast(1)|central_nervous_system(2)|endometrium(6)|kidney(8)|large_intestine(3)|lung(18)|ovary(3)|skin(1)|upper_aerodigestive_tract(1)	43		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		TGGTGGGGTGCGGTGGACACA	0.657												
CNTN6	27255	broad.mit.edu	37	3	1339583	1339583	+	Silent	SNP	G	G	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr3:1339583G>T	uc003boz.3	+	6	936	c.669G>T	c.(667-669)ggG>ggT	p.G223G	CNTN6_uc010hbo.2_Silent_p.G218G|CNTN6_uc011asj.2_Silent_p.G151G|CNTN6_uc003bpa.3_Silent_p.G223G	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	Homo sapiens contactin 6 (CNTN6), mRNA.	223					axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane		p.G223W(1)		breast(6)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(25)|lung(34)|ovary(1)|pancreas(1)|prostate(3)|skin(3)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(2)	90		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		GTGTGATGGGGGAATATGAAC	0.358												
ITPR1	3708	broad.mit.edu	37	3	4856788	4856788	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr3:4856788G>A	uc003bqc.3	+	57	8058	c.7708G>A	c.(7708-7710)Gtc>Atc	p.V2570I	ITPR1_uc021wsi.1_Missense_Mutation_p.V2537I|ITPR1_uc021wsj.1_Missense_Mutation_p.V2522I|ITPR1_uc011asu.2_Missense_Mutation_p.V548I|ITPR1_uc010hcc.2_Missense_Mutation_p.V305I|ITPR1_uc011asv.2_Missense_Mutation_p.V261I	NM_001168272	NP_001161744	Q14643	ITPR1_HUMAN	Homo sapiens inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), transcript variant 3, mRNA.	2585					activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			NS(1)|autonomic_ganglia(1)|breast(10)|endometrium(15)|kidney(6)|large_intestine(27)|liver(1)|lung(27)|ovary(6)|pancreas(1)|prostate(4)|skin(5)|urinary_tract(2)	106				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		CTTCTTCATGGTCATCATCAT	0.448												
ATP2B2	491	broad.mit.edu	37	3	10452358	10452358	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr3:10452358G>A	uc003bvt.3	-	2	780	c.341C>T	c.(340-342)gCc>gTc	p.A114V	ATP2B2_uc003bvv.3_Missense_Mutation_p.A114V|ATP2B2_uc003bvw.3_Missense_Mutation_p.A114V|ATP2B2_uc010hdp.2_Missense_Mutation_p.A114V|ATP2B2_uc010hdo.3_5'UTR	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	Homo sapiens ATPase, Ca++ transporting, plasma membrane 2 (ATP2B2), transcript variant 1, mRNA.	114					ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|calcium ion binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			breast(1)|central_nervous_system(2)|cervix(1)|endometrium(7)|large_intestine(19)|lung(29)|ovary(5)|prostate(2)|skin(4)|stomach(2)|urinary_tract(2)	74						GATGATGGCGGCAATCTCCAG	0.592												
C3orf20	84077	broad.mit.edu	37	3	14799018	14799018	+	Missense_Mutation	SNP	A	A	C			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr3:14799018A>C	uc003byy.3	+	12	2533	c.2081A>C	c.(2080-2082)gAc>gCc	p.D694A	C3orf20_uc003byz.3_Missense_Mutation_p.D572A|C3orf20_uc003bza.3_Missense_Mutation_p.D572A|C3orf20_uc003bzb.1_Missense_Mutation_p.D195A|C3orf20_uc011avj.2_Missense_Mutation_p.D21A	NM_032137	NP_001171887	Q8ND61	CC020_HUMAN	Homo sapiens chromosome 3 open reading frame 20 (C3orf20), transcript variant 1, mRNA.	694						cytoplasm|integral to membrane		p.D694D(1)		NS(1)|breast(1)|central_nervous_system(1)|endometrium(5)|kidney(2)|large_intestine(13)|lung(11)|ovary(4)|skin(2)	40						CTGGTCTCTGACGTGGAGCTG	0.632												
MYRIP	25924	broad.mit.edu	37	3	40231528	40231528	+	Silent	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr3:40231528G>A	uc003cka.3	+	9	1374	c.1239G>A	c.(1237-1239)agG>agA	p.R413R	MYRIP_uc010hhu.3_Non-coding_Transcript|MYRIP_uc010hhv.3_Silent_p.R413R|MYRIP_uc010hhw.3_Silent_p.R324R|MYRIP_uc011ayz.2_Silent_p.R226R|FLJ33065_uc003ckb.3_Intron	NM_015460	NP_056275	Q8NFW9	MYRIP_HUMAN	Homo sapiens myosin VIIA and Rab interacting protein (MYRIP), mRNA.	413	Myosin-binding.				intracellular protein transport		actin binding|zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(9)|liver(2)|lung(10)|ovary(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	34				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		TGTGTCCCAGGTCCCGGGCCC	0.637												
PIK3CB	5291	broad.mit.edu	37	3	138374244	138374244	+	Missense_Mutation	SNP	T	T	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr3:138374244T>G	uc011bmq.2	-	21	3200	c.3200A>C	c.(3199-3201)gAc>gCc	p.D1067A	PIK3CB_uc011bmn.2_Missense_Mutation_p.D579A|PIK3CB_uc011bmo.2_Missense_Mutation_p.D518A|PIK3CB_uc011bmp.2_Missense_Mutation_p.D654A|PIK3CB_uc003est.1_Non-coding_Transcript	NM_006219	NP_006210	P42338	PK3CB_HUMAN	Homo sapiens phosphoinositide-3-kinase, catalytic, beta polypeptide (PIK3CB), transcript variant 1, mRNA.	1067	PI3K/PI4K.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.D1067V(2)		NS(1)|breast(3)|endometrium(5)|kidney(2)|large_intestine(4)|lung(17)|ovary(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(4)	41						AGATCTGTAGTCTTTCCGAAC	0.408												
PIK3CB	5291	broad.mit.edu	37	3	138374281	138374281	+	Missense_Mutation	SNP	T	T	C			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr3:138374281T>C	uc011bmq.2	-	21	3163	c.3163A>G	c.(3163-3165)Act>Gct	p.T1055A	PIK3CB_uc011bmn.2_Missense_Mutation_p.T567A|PIK3CB_uc011bmo.2_Missense_Mutation_p.T506A|PIK3CB_uc011bmp.2_Missense_Mutation_p.T642A|PIK3CB_uc003est.1_Non-coding_Transcript	NM_006219	NP_006210	P42338	PK3CB_HUMAN	Homo sapiens phosphoinositide-3-kinase, catalytic, beta polypeptide (PIK3CB), transcript variant 1, mRNA.	1055	PI3K/PI4K.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			NS(1)|breast(3)|endometrium(5)|kidney(2)|large_intestine(4)|lung(17)|ovary(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(4)	41						TTCACTTTAGTAGTCCAGCTT	0.413												
KCNAB1	7881	broad.mit.edu	37	3	155838668	155838668	+	Missense_Mutation	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr3:155838668C>T	uc003far.2	+	0	332	c.268C>T	c.(268-270)Ccg>Tcg	p.P90S	KCNAB1_uc011bon.1_Missense_Mutation_p.P90S	NM_172160	NP_751892	Q14722	KCAB1_HUMAN	Homo sapiens potassium voltage-gated channel, shaker-related subfamily, beta member 1 (KCNAB1), transcript variant 1, mRNA.	90						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity			breast(1)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(5)|lung(8)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	28			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			CACAGGCATGCCGCACAGGTA	0.592												
VPS8	23355	broad.mit.edu	37	3	184543975	184543975	+	Missense_Mutation	SNP	C	C	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr3:184543975C>G	uc021xik.1	+	1	266	c.178C>G	c.(178-180)Cct>Gct	p.P60A	VPS8_uc003fpb.1_Missense_Mutation_p.P60A|VPS8_uc010hyd.1_Missense_Mutation_p.P60A|VPS8_uc003fpc.1_Missense_Mutation_p.P60A	NM_001009921	NP_001009921	Q8N3P4	VPS8_HUMAN	Homo sapiens vacuolar protein sorting 8 homolog (S. cerevisiae) (VPS8), transcript variant 1, mRNA.	60							zinc ion binding			NS(1)|breast(1)|central_nervous_system(3)|cervix(1)|endometrium(6)|kidney(4)|large_intestine(11)|lung(19)|ovary(1)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	54	all_cancers(143;2.51e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.02e-33)|OV - Ovarian serous cystadenocarcinoma(80;4.81e-22)			GTTTGATATTCCTCAAGTTGA	0.318												
ACAP2	23527	broad.mit.edu	37	3	195012473	195012473	+	Silent	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr3:195012473C>T	uc003fun.4	-	19	2266	c.2025G>A	c.(2023-2025)cgG>cgA	p.R675R		NM_012287	NP_036419	Q15057	ACAP2_HUMAN	Homo sapiens ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 (ACAP2), mRNA.	675					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			cervix(2)|endometrium(2)|kidney(4)|large_intestine(5)|lung(10)|ovary(1)|pancreas(1)|upper_aerodigestive_tract(2)	27						GCAATGGTCCCCGCCCTTGGA	0.413												
AFP	174	broad.mit.edu	37	4	74316398	74316398	+	Frame_Shift_Del	DEL	A	A	-			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr4:74316398delA	uc003hgz.1	+	10	1403	c.1356delA	c.(1354-1356)agafs	p.R452fs	AFP_uc011cbg.1_Frame_Shift_Del_p.R226fs	NM_001134	NP_001125	P02771	FETA_HUMAN	Homo sapiens alpha-fetoprotein (AFP), mRNA.	452	Albumin 3.				transport		metal ion binding			breast(1)|endometrium(2)|large_intestine(3)|lung(13)|ovary(1)|skin(1)|urinary_tract(1)	22	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CCATCACCAGAAAAATGGCAG	0.517									Alpha-Fetoprotein, Hereditary Persistence of			
AFF1	4299	broad.mit.edu	37	4	88048823	88048823	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr4:88048823G>A	uc011ccz.2	+	15	3207	c.2932G>A	c.(2932-2934)Gca>Aca	p.A978T	AFF1_uc003hqj.4_Missense_Mutation_p.A971T|AFF1_uc003hqk.4_Missense_Mutation_p.A971T|AFF1_uc011cda.2_Missense_Mutation_p.A609T	NM_001166693	NP_001160165	P51825	AFF1_HUMAN	Homo sapiens AF4/FMR2 family, member 1 (AFF1), transcript variant 1, mRNA.	971						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)|large_intestine(2)	3		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		CATGAGGGAGGCAAAAAAGAT	0.378												
NR3C2	4306	broad.mit.edu	37	4	149181209	149181209	+	Missense_Mutation	SNP	A	A	C			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr4:149181209A>C	uc003ilj.4	-	2	2181	c.1818T>G	c.(1816-1818)tgT>tgG	p.C606W	NR3C2_uc003ilk.4_Missense_Mutation_p.C606W|NR3C2_uc010iph.3_Non-coding_Transcript	NM_000901	NP_000892	P08235	MCR_HUMAN	Homo sapiens nuclear receptor subfamily 3, group C, member 2 (NR3C2), transcript variant 1, mRNA.	606					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			breast(1)|central_nervous_system(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(14)|liver(1)|lung(11)|prostate(2)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(2)	41	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	CCTCATCCCCACACACCAAAC	0.413												
POC5	134359	broad.mit.edu	37	5	74998543	74998543	+	Missense_Mutation	SNP	T	T	C			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr5:74998543T>C	uc003keh.4	-	4	597	c.400A>G	c.(400-402)Aca>Gca	p.T134A	POC5_uc010izu.3_Missense_Mutation_p.T17A|POC5_uc003keg.4_Missense_Mutation_p.T109A	NM_001099271	NP_001092741	Q8NA72	POC5_HUMAN	Homo sapiens POC5 centriolar protein homolog (Chlamydomonas) (POC5), transcript variant 1, mRNA.	134					cell cycle	centriole				breast(1)|endometrium(1)|kidney(2)|large_intestine(2)|lung(4)|pancreas(1)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	15						CTAGAATTTGTTGCTGGTGAG	0.403												
HIVEP1	3096	broad.mit.edu	37	6	12121493	12121493	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr6:12121493G>A	uc003nac.3	+	3	1644	c.1465G>A	c.(1465-1467)Gta>Ata	p.V489I	HIVEP1_uc011diq.2_Non-coding_Transcript	NM_002114	NP_002105	P15822	ZEP1_HUMAN	Homo sapiens human immunodeficiency virus type I enhancer binding protein 1 (HIVEP1), mRNA.	489					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding	p.V489I(2)		NS(1)|breast(5)|central_nervous_system(1)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(3)|kidney(8)|large_intestine(11)|liver(1)|lung(31)|ovary(4)|prostate(1)|skin(4)|upper_aerodigestive_tract(3)|urinary_tract(3)	90	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				TCATTCAGACGTAGAAGACAG	0.527												
SNX14	57231	broad.mit.edu	37	6	86258062	86258062	+	Missense_Mutation	SNP	G	G	C			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr6:86258062G>C	uc003pkr.3	-	8	1017	c.824C>G	c.(823-825)tCt>tGt	p.S275C	SNX14_uc003pkp.3_Missense_Mutation_p.S138C|SNX14_uc003pkq.3_5'UTR|SNX14_uc011dzg.2_Missense_Mutation_p.S223C|SNX14_uc003pks.3_Missense_Mutation_p.S231C|SNX14_uc003pkt.3_Missense_Mutation_p.S275C	NM_153816	NP_722523	Q9Y5W7	SNX14_HUMAN	Homo sapiens sorting nexin 14 (SNX14), transcript variant 1, mRNA.	275	PXA.				cell communication|protein transport	integral to membrane	phosphatidylinositol binding|signal transducer activity			NS(1)|endometrium(1)|kidney(2)|large_intestine(6)|lung(11)|skin(1)	22		all_cancers(76;4.83e-07)|Acute lymphoblastic leukemia(125;3.3e-08)|Prostate(29;2.55e-07)|all_hematologic(105;3.66e-05)|all_epithelial(107;0.000695)|Lung NSC(302;0.197)|all_lung(197;0.24)		BRCA - Breast invasive adenocarcinoma(108;0.0423)		CACAGAGCCAGACAGAATCTC	0.279												
SIM1	6492	broad.mit.edu	37	6	100901720	100901720	+	Missense_Mutation	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr6:100901720C>T	uc003pqj.4	-	2	643	c.176_splice	c.e2-1	p.G59_splice	SIM1_uc021zdg.1_Splice_Site_p.G59_splice|SIM1_uc010kcu.3_Splice_Site_p.G59_splice	NM_005068	NP_005059	P81133	SIM1_HUMAN	Homo sapiens single-minded homolog 1 (Drosophila) (SIM1), mRNA.	59					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(1)|central_nervous_system(4)|endometrium(5)|kidney(1)|large_intestine(15)|lung(34)|ovary(4)|prostate(1)|skin(5)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(5)	79		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		CTCGCCGAGCCCTGTGGAGAC	0.627												
BVES	11149	broad.mit.edu	37	6	105549004	105549004	+	Missense_Mutation	SNP	G	G	A	rs138992583		TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr6:105549004G>A	uc003pqw.3	-	7	1200	c.1043C>T	c.(1042-1044)cCg>cTg	p.P348L	BVES_uc003pqx.3_Missense_Mutation_p.P348L|BVES_uc003pqy.3_Missense_Mutation_p.P348L	NM_147147	NP_671488	Q8NE79	POPD1_HUMAN	Homo sapiens blood vessel epicardial substance (BVES), transcript variant B, mRNA.	348					epithelial cell-cell adhesion|muscle organ development|positive regulation of locomotion|positive regulation of receptor recycling|regulation of Cdc42 GTPase activity|regulation of cell shape|regulation of Rac GTPase activity|substrate adhesion-dependent cell spreading|vesicle-mediated transport	integral to membrane|lateral plasma membrane|tight junction	structural molecule activity			NS(2)|large_intestine(6)|lung(9)|prostate(2)|skin(1)|urinary_tract(1)	21		all_cancers(87;2.83e-05)|Acute lymphoblastic leukemia(125;1.95e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0101)|Colorectal(196;0.204)|Lung NSC(302;0.238)				TGGAGATGCCGGTTCAAAAAC	0.453												
TIAM2	26230	broad.mit.edu	37	6	155498003	155498003	+	Missense_Mutation	SNP	C	C	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr6:155498003C>A	uc003qqb.3	+	11	3688	c.2415C>A	c.(2413-2415)gaC>gaA	p.D805E	TIAM2_uc003qqe.3_Missense_Mutation_p.D805E|TIAM2_uc010kjj.3_Missense_Mutation_p.D338E|TIAM2_uc003qqf.3_Missense_Mutation_p.D181E|TIAM2_uc011efl.1_Missense_Mutation_p.D141E|TIAM2_uc003qqg.3_Missense_Mutation_p.D117E	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	Homo sapiens T-cell lymphoma invasion and metastasis 2 (TIAM2), transcript variant 1, mRNA.	805					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			breast(2)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(20)|lung(21)|ovary(5)|prostate(1)|skin(2)|upper_aerodigestive_tract(4)	65		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		TTCCCCGAGACAATGCATGGG	0.408												
FNDC1	84624	broad.mit.edu	37	6	159672498	159672498	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr6:159672498G>A	uc010kjv.3	+	16	5199	c.4999G>A	c.(4999-5001)Gtg>Atg	p.V1667M		NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	Homo sapiens fibronectin type III domain containing 1 (FNDC1), mRNA.	1667	Fibronectin type-III 5.					extracellular region				NS(1)|autonomic_ganglia(1)|breast(2)|central_nervous_system(1)|endometrium(16)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(29)|liver(2)|lung(23)|ovary(3)|pancreas(1)|prostate(5)|skin(1)|upper_aerodigestive_tract(3)	93		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		CGTGGTGGCCGTGGAAGGTTG	0.537												
MAD1L1	8379	broad.mit.edu	37	7	2255875	2255875	+	Silent	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr7:2255875C>T	uc003slh.1	-	7	992	c.726G>A	c.(724-726)gtG>gtA	p.V242V	MAD1L1_uc003sle.1_5'Flank|MAD1L1_uc003slf.1_Silent_p.V242V|MAD1L1_uc003slg.1_Silent_p.V242V|MAD1L1_uc010ksh.1_Silent_p.V242V|MAD1L1_uc003sli.1_Silent_p.V150V|MAD1L1_uc010ksi.1_Silent_p.V195V|MAD1L1_uc010ksj.3_Silent_p.V242V	NM_001013836	NP_003541	Q9Y6D9	MD1L1_HUMAN	Homo sapiens MAD1 mitotic arrest deficient-like 1 (yeast) (MAD1L1), transcript variant 2, mRNA.	242					cell division|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase|mitotic prometaphase|mitotic telophase	actin cytoskeleton|centrosome|condensed chromosome kinetochore|cytosol|mitochondrion|nucleus|spindle	protein binding			central_nervous_system(2)|endometrium(5)|kidney(1)|large_intestine(2)|lung(20)|ovary(1)|prostate(5)	36		Ovarian(82;0.0272)		UCEC - Uterine corpus endometrioid carcinoma (27;0.134)|OV - Ovarian serous cystadenocarcinoma(56;3.63e-14)		TCATGTTCTTCACAATCGCTG	0.597												
HOXA13	3209	broad.mit.edu	37	7	27238936	27238936	+	Missense_Mutation	SNP	A	A	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr7:27238936A>G	uc003szb.1	-	0	790	c.761T>C	c.(760-762)gTg>gCg	p.V254A	HOTTIP_uc022aau.1_5'Flank	NM_000522	NP_000513	P31271	HXA13_HUMAN	Homo sapiens homeobox A13 (HOXA13), mRNA.	254					skeletal system development	nucleus	sequence-specific DNA binding			breast(1)|central_nervous_system(1)|endometrium(1)|large_intestine(1)|lung(2)	6						GCCCGGCACCACTGGCATATC	0.672			T	NUP98	AML							
ZNF479	90827	broad.mit.edu	37	7	57187809	57187809	+	Missense_Mutation	SNP	T	T	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr7:57187809T>G	uc010kzo.3	-	4	1584	c.1313A>C	c.(1312-1314)aAa>aCa	p.K438T		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	Homo sapiens zinc finger protein 479 (ZNF479), mRNA.	438					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			NS(1)|breast(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(14)|lung(53)|ovary(5)|skin(2)|stomach(1)|upper_aerodigestive_tract(2)	84			GBM - Glioblastoma multiforme(1;9.18e-12)			TTCTTCACATTTGTAGGGTCT	0.453												
ASZ1	136991	broad.mit.edu	37	7	117067510	117067510	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr7:117067510G>A	uc003vjb.2	-	0	68	c.5C>T	c.(4-6)gCg>gTg	p.A2V	ASZ1_uc011kno.1_Missense_Mutation_p.A2V|ASZ1_uc011knp.1_5'UTR	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	Homo sapiens ankyrin repeat, SAM and basic leucine zipper domain containing 1 (ASZ1), transcript variant 1, mRNA.	2					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			breast(1)|central_nervous_system(2)|endometrium(1)|kidney(1)|large_intestine(4)|lung(10)|ovary(1)|prostate(3)|skin(1)	24	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			CGCGCTCGCCGCCATGCCAGC	0.692											OREG0003439	type=REGULATORY REGION|Gene=ASZ1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay
TRPV6	55503	broad.mit.edu	37	7	142575507	142575507	+	Silent	SNP	C	C	T	rs145875993		TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr7:142575507C>T	uc003wbx.2	-	2	475	c.246G>A	c.(244-246)gcG>gcA	p.A82A	TRPV6_uc003wbw.1_5'Flank|TRPV6_uc010lou.1_5'UTR	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	Homo sapiens transient receptor potential cation channel, subfamily V, member 6 (TRPV6), mRNA.	82					regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			breast(1)|endometrium(1)|kidney(2)|large_intestine(11)|lung(15)|ovary(3)|prostate(2)|skin(5)|upper_aerodigestive_tract(2)	42	Melanoma(164;0.059)					CTATGTGTAGCGCTGTTTCCC	0.562												
ARHGEF5	7984	broad.mit.edu	37	7	144060770	144060770	+	Silent	SNP	T	T	C	rs141931104	by1000genomes	TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr7:144060770T>C	uc003wel.3	+	1	1126	c.1008T>C	c.(1006-1008)aaT>aaC	p.N336N	ARHGEF5_uc003wek.3_Silent_p.N336N	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	Homo sapiens Rho guanine nucleotide exchange factor (GEF) 5 (ARHGEF5), mRNA.	336					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity	p.N336N(10)		breast(1)|endometrium(6)|kidney(8)|large_intestine(9)|liver(1)|lung(8)|ovary(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	40	Melanoma(164;0.14)					CAGAAGAGAATAGGGCGGACT	0.512												
DPYSL2	1808	broad.mit.edu	37	8	26492400	26492400	+	Silent	SNP	C	C	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr8:26492400C>A	uc003xfb.2	+	7	1226	c.795C>A	c.(793-795)gcC>gcA	p.A265A	DPYSL2_uc003xfa.3_Silent_p.A370A|DPYSL2_uc011lag.2_Silent_p.A265A|DPYSL2_uc011lah.2_Silent_p.A229A	NM_001386	NP_001377	Q16555	DPYL2_HUMAN	Homo sapiens dihydropyrimidinase-like 2 (DPYSL2), transcript variant 2, mRNA.	265					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	dihydropyrimidinase activity|protein binding			breast(1)|endometrium(5)|large_intestine(8)|lung(3)|prostate(1)|skin(1)|stomach(1)	20		all_cancers(63;0.121)|Ovarian(32;2.68e-05)|all_epithelial(46;0.116)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;3.33e-10)|Colorectal(74;0.183)		AGGTCATCGCCCAGGCACGGA	0.607												
LYN	4067	broad.mit.edu	37	8	56854426	56854426	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr8:56854426G>A	uc003xsk.4	+	1	290	c.8G>A	c.(7-9)tGt>tAt	p.C3Y	LYN_uc003xsl.4_Missense_Mutation_p.C3Y	NM_002350	NP_002341	P07948	LYN_HUMAN	Homo sapiens v-yes-1 Yamaguchi sarcoma viral related oncogene homolog (LYN), transcript variant 1, mRNA.	3					erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			breast(4)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(4)|lung(8)|ovary(1)|upper_aerodigestive_tract(1)	22		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			AATATGGGATGTATAAAATCA	0.343												
DMRT2	10655	broad.mit.edu	37	9	1056405	1056405	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr9:1056405G>A	uc003zha.3	+	3	1018	c.818G>A	c.(817-819)cGc>cAc	p.R273H	DMRT2_uc003zhb.4_3'UTR|DMRT2_uc003zgy.4_Missense_Mutation_p.R117H|DMRT2_uc011llt.2_3'UTR|DMRT2_uc022bcw.1_3'UTR|DMRT2_uc011llv.2_Missense_Mutation_p.R273H	NM_181872	NP_870987	Q9Y5R5	DMRT2_HUMAN	Homo sapiens doublesex and mab-3 related transcription factor 2 (DMRT2), transcript variant 3, mRNA.	273					male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|lung(1)|prostate(2)	4		all_lung(10;1.49e-09)|Lung NSC(10;1.86e-09)		Lung(218;0.0195)|GBM - Glioblastoma multiforme(50;0.0388)		CTGCCCAACCGCATGGTGCCT	0.473												
KIAA1045	23349	broad.mit.edu	37	9	34971375	34971375	+	Missense_Mutation	SNP	G	G	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr9:34971375G>T	uc003zvq.3	+	1	258	c.80G>T	c.(79-81)gGg>gTg	p.G27V	KIAA1045_uc003zvr.3_Missense_Mutation_p.G27V	NM_015297	NP_056112	Q9UPV7	K1045_HUMAN	Homo sapiens KIAA1045 (KIAA1045), mRNA.	27							calcium ion binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(7)|lung(4)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	19			LUSC - Lung squamous cell carcinoma(32;0.00575)			TTCAAGGATGGGCTGCGGGAC	0.607												
OR13C3	138803	broad.mit.edu	37	9	107298263	107298263	+	Missense_Mutation	SNP	C	C	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chr9:107298263C>A	uc004bcb.1	-	0	832	c.832G>T	c.(832-834)Gtg>Ttg	p.V278L		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	Homo sapiens olfactory receptor, family 13, subfamily C, member 3 (OR13C3), mRNA.	278					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(2)|large_intestine(7)|lung(7)|pancreas(1)|prostate(1)|skin(1)	19						AATATGATCACCACAGTCAGG	0.418												
CCNB3	85417	broad.mit.edu	37	X	50053319	50053319	+	Missense_Mutation	SNP	G	G	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chrX:50053319G>T	uc004dox.4	+	5	2448	c.2150G>T	c.(2149-2151)aGc>aTc	p.S717I	CCNB3_uc004doy.3_Missense_Mutation_p.S717I|CCNB3_uc004doz.3_Intron|CCNB3_uc010njq.3_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	Homo sapiens cyclin B3 (CCNB3), transcript variant 3, mRNA.	717					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding	p.S717I(3)		breast(3)|cervix(1)|endometrium(5)|kidney(4)|large_intestine(9)|lung(41)|ovary(4)|pancreas(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	75	Ovarian(276;0.236)					CAGGAGAAAAGCACCATGGAA	0.453												
ZC3H12B	340554	broad.mit.edu	37	X	64721739	64721739	+	Silent	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chrX:64721739G>A	uc010nko.3	+	4	1228	c.1161G>A	c.(1159-1161)tcG>tcA	p.S387S		NM_001010888	NP_001010888	Q5HYM0	ZC12B_HUMAN	Homo sapiens zinc finger CCCH-type containing 12B (ZC3H12B), mRNA.	376							endonuclease activity|nucleic acid binding|zinc ion binding			breast(2)|endometrium(4)|kidney(2)|large_intestine(4)|lung(13)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	29						CCCAGCGTTCGGTGGCTGATG	0.527												
AWAT2	158835	broad.mit.edu	37	X	69263788	69263788	+	Silent	SNP	A	A	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chrX:69263788A>G	uc004dxt.1	-	2	261	c.255T>C	c.(253-255)taT>taC	p.Y85Y		NM_001002254	NP_001002254	Q6E213	AWAT2_HUMAN	Homo sapiens acyl-CoA wax alcohol acyltransferase 2 (AWAT2), mRNA.	85						endoplasmic reticulum membrane|integral to membrane	long-chain-alcohol O-fatty-acyltransferase activity			endometrium(3)|large_intestine(3)|lung(2)|ovary(1)	9						TGAGAGGGAAATAATCGCTGT	0.602												
NONO	4841	broad.mit.edu	37	X	70514099	70514099	+	Missense_Mutation	SNP	T	T	C			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chrX:70514099T>C	uc004dzo.3	+	5	1081	c.371T>C	c.(370-372)aTt>aCt	p.I124T	BCYRN1_uc011mpt.1_Intron|NONO_uc004dzn.3_Missense_Mutation_p.I124T|NONO_uc004dzp.3_Missense_Mutation_p.I124T|NONO_uc011mpv.2_Missense_Mutation_p.I35T|NONO_uc004dzq.3_5'UTR	NM_001145408	NP_001138882	Q15233	NONO_HUMAN	Homo sapiens non-POU domain containing, octamer-binding (NONO), transcript variant 1, mRNA.	124	DBHS.|RRM 1.				DNA recombination|DNA repair|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nuclear matrix|paraspeckles	DNA binding|identical protein binding|nucleotide binding|RNA binding		NONO/TFE3(2)	endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(2)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	19	Renal(35;0.156)					CTAGCGGAGATTGCCAAAGTG	0.488			T	TFE3	papillary renal cancer							
TAF1	6872	broad.mit.edu	37	X	70586172	70586172	+	Missense_Mutation	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chrX:70586172C>T	uc004dzu.4	+	0	59	c.8C>T	c.(7-9)cCc>cTc	p.P3L	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.4_Missense_Mutation_p.P3L	NM_138923	NP_620278	P21675	TAF1_HUMAN	Homo sapiens TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa (TAF1), transcript variant 2, mRNA.	3	Protein kinase 1.				G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			breast(13)|central_nervous_system(6)|cervix(1)|endometrium(25)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(16)|lung(34)|ovary(9)|prostate(3)|skin(5)|upper_aerodigestive_tract(1)|urinary_tract(3)	124	Renal(35;0.156)	all_lung(315;0.000321)				TCTATGGGACCCGGCTGCGAT	0.562												
ACTRT1	139741	broad.mit.edu	37	X	127185764	127185764	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chrX:127185764G>A	uc004eum.3	-	0	619	c.422C>T	c.(421-423)gCg>gTg	p.A141V		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	Homo sapiens actin-related protein T1 (ACTRT1), mRNA.	141						cytoplasm|cytoskeleton		p.A141V(2)		breast(1)|central_nervous_system(2)|cervix(1)|endometrium(5)|kidney(1)|large_intestine(6)|lung(13)|ovary(2)|skin(3)	34						CGCTGCCACCGCATGATTAGA	0.522												
SLC25A14	9016	broad.mit.edu	37	X	129492634	129492634	+	Silent	SNP	A	A	G			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chrX:129492634A>G	uc004evr.1	+	5	682	c.510A>G	c.(508-510)ggA>ggG	p.G170G	SLC25A14_uc010nrg.3_Silent_p.G170G|SLC25A14_uc011mut.2_Missense_Mutation_p.K110E|SLC25A14_uc011muu.2_Silent_p.G173G|SLC25A14_uc004evp.1_Silent_p.G173G|SLC25A14_uc004evq.1_Silent_p.G170G	NM_022810	NP_073721	O95258	UCP5_HUMAN	Homo sapiens solute carrier family 25 (mitochondrial carrier, brain), member 14 (SLC25A14), nuclear gene encoding mitochondrial protein, transcript variant short, mRNA.	173					aerobic respiration|mitochondrial transport	integral to plasma membrane|mitochondrial inner membrane	binding			endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(7)|lung(7)|ovary(1)	22						AGGCTCAAGGAAGCTTGTTCC	0.373												
GPR112	139378	broad.mit.edu	37	X	135433699	135433699	+	Missense_Mutation	SNP	C	C	T			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chrX:135433699C>T	uc004ezu.1	+	7	7113	c.6822_splice	c.e7+1	p.S2274_splice	GPR112_uc010nsb.1_Splice_Site_p.S2069_splice|GPR112_uc010nsc.1_Intron	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	Homo sapiens G protein-coupled receptor 112 (GPR112), mRNA.	2274					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			NS(2)|breast(13)|central_nervous_system(2)|cervix(3)|endometrium(17)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(33)|lung(97)|ovary(5)|pancreas(2)|prostate(4)|skin(10)|upper_aerodigestive_tract(1)|urinary_tract(2)	199	Acute lymphoblastic leukemia(192;0.000127)					ACGGAAAATTCGGTAAAATAA	0.269												
ATP11C	286410	broad.mit.edu	37	X	138879436	138879436	+	Missense_Mutation	SNP	C	C	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chrX:138879436C>A	uc004faz.3	-	10	1015	c.916G>T	c.(916-918)Gct>Tct	p.A306S	ATP11C_uc004fay.3_Non-coding_Transcript|ATP11C_uc004fba.3_Missense_Mutation_p.A306S	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	Homo sapiens ATPase, class VI, type 11C (ATP11C), transcript variant 1, mRNA.	306					ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(2)|central_nervous_system(1)|endometrium(14)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(15)|lung(31)|ovary(5)|prostate(1)|skin(3)	75	Acute lymphoblastic leukemia(192;0.000127)					CATACTGCAGCTTTGGTCAGT	0.343												
TKTL1	8277	broad.mit.edu	37	X	153543586	153543586	+	Missense_Mutation	SNP	G	G	A			TCGA-32-2494-01A-01D-1353-08	TCGA-32-2494-10A-01D-1353-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d45df59-16c5-4706-82ec-6d2f729324ab	6a0d3963-8762-440e-b8f2-757de41b3204	g.chrX:153543586G>A	uc004fkg.3	+	6	1114	c.928G>A	c.(928-930)Gtt>Att	p.V310I	TKTL1_uc011mzl.2_Missense_Mutation_p.V304I|TKTL1_uc011mzm.2_Missense_Mutation_p.V106I|TKTL1_uc004fkh.3_Missense_Mutation_p.V254I	NM_012253	NP_001139406	P51854	TKTL1_HUMAN	Homo sapiens transketolase-like 1 (TKTL1), transcript variant 1, mRNA.	310					glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			NS(2)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(8)|ovary(5)|prostate(1)|skin(1)|urinary_tract(2)	34	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CAACAGAGTCGTTGTGCTGGA	0.483												
