Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PZP	5858	broad.mit.edu	37	12	9307319	9307319	+	Missense_Mutation	SNP	G	G	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:9307319G>T	ENST00000261336.2	-	29	3695	c.3667C>A	c.(3667-3669)Ctc>Atc	p.L1223I	PZP_ENST00000381997.2_Missense_Mutation_p.L1009I	NM_002864.2	NP_002855.2			pregnancy-zone protein											breast(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(10)|large_intestine(21)|lung(46)|ovary(3)|prostate(2)|skin(6)|stomach(3)|upper_aerodigestive_tract(5)	102						TGGGCCGTGAGATAAGCGAGG	0.582000													20	26					3.62473e-10	1.2495e-09	0.00188189	1	0
RTTN	25914	broad.mit.edu	37	18	67843922	67843922	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr18:67843922G>A	ENST00000255674.6	-	11	1751	c.1465C>T	c.(1465-1467)Cct>Tct	p.P489S	RTTN_ENST00000437017.1_Missense_Mutation_p.P489S|RTTN_ENST00000454359.1_Missense_Mutation_p.P489S	NM_173630.3	NP_775901.3	Q86VV8	RTTN_HUMAN	rotatin	489							binding			NS(1)|breast(3)|central_nervous_system(2)|endometrium(11)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(9)|lung(35)|ovary(4)|pancreas(2)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	80		Esophageal squamous(42;0.129)				TTTTCAACAGGGAGAAGCGTT	0.418000													26	59					0	0	0.000720815	0	0
DOCK10	55619	broad.mit.edu	37	2	225653885	225653885	+	Missense_Mutation	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:225653885T>A	ENST00000409592.3	-	48	5409	c.5296A>T	c.(5296-5298)Atg>Ttg	p.M1766L	DOCK10_ENST00000258390.7_Missense_Mutation_p.M1772L			Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	1772	DHR-2.						GTP binding			NS(1)|breast(3)|cervix(1)|endometrium(6)|kidney(10)|large_intestine(16)|lung(40)|ovary(2)|pancreas(1)|prostate(2)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	87		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		ATAGAGAACATGCCTTGGGAG	0.373000													5	19					0	0	0.000602214	0	0
SS18	6760	broad.mit.edu	37	18	23632698	23632698	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr18:23632698G>A	ENST00000415083.2	-	5	552	c.497C>T	c.(496-498)tCt>tTt	p.S166F	SS18_ENST00000542420.2_Missense_Mutation_p.S143F|SS18_ENST00000539849.1_Missense_Mutation_p.S84F|SS18_ENST00000585241.1_5'UTR|SS18_ENST00000542743.1_Missense_Mutation_p.S114F|SS18_ENST00000545952.1_Missense_Mutation_p.S114F|SS18_ENST00000269137.7_Missense_Mutation_p.S166F	NM_001007559.1|NM_005637.2	NP_001007560.1|NP_005628.2	Q15532	SSXT_HUMAN	synovial sarcoma translocation, chromosome 18	166	Transcriptional activation.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding		SS18/SSX2(706)|SS18/SSX1(1169)|SS18/SSX4(12)	endometrium(1)|kidney(2)|large_intestine(4)|lung(11)|ovary(1)	19	all_cancers(21;0.000194)|Lung NSC(5;0.000413)|all_lung(6;0.00118)|Ovarian(20;0.124)					TGATGGCACAGAATGGTTGTA	0.458000			T	"""SSX1,  SSX2"""	synovial sarcoma								48	92					0	0	0.00361006	0	0
COL15A1	1306	broad.mit.edu	37	9	101817638	101817638	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr9:101817638G>A	ENST00000375001.3	+	34	3599	c.3176G>A	c.(3175-3177)gGa>gAa	p.G1059E		NM_001855.3	NP_001846.3	P39059	COFA1_HUMAN	collagen, type XV, alpha 1	1059	Triple-helical region 8 (COL8).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			NS(1)|breast(4)|central_nervous_system(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(20)|liver(1)|lung(42)|ovary(6)|prostate(5)|skin(6)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(1)	107		Acute lymphoblastic leukemia(62;0.0562)				GGCCTGCCCGGAAATCCAGGC	0.542000													27	63					0	0	0.00395357	0	0
AGAP2	116986	broad.mit.edu	37	12	58124681	58124681	+	Missense_Mutation	SNP	T	T	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:58124681T>G	ENST00000257897.3	-	11	1278	c.1193A>C	c.(1192-1194)aAa>aCa	p.K398T	AGAP2_ENST00000547588.1_Missense_Mutation_p.K734T	NM_014770.3	NP_055585.1	Q99490	AGAP2_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	734					axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			breast(7)|central_nervous_system(3)|cervix(1)|endometrium(5)|large_intestine(7)|lung(20)|prostate(3)|skin(1)|stomach(1)	48						GCCCGGGACTTTGACTGTTGT	0.592000													3	7					0	0	6.4e-05	0	0
USP1	7398	broad.mit.edu	37	1	62907261	62907261	+	Silent	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:62907261T>C	ENST00000339950.4	+	3	1088	c.273T>C	c.(271-273)taT>taC	p.Y91Y	USP1_ENST00000371146.1_Silent_p.Y91Y	NM_003368.4	NP_003359.3	O94782	UBP1_HUMAN	ubiquitin specific peptidase 1	91					DNA repair|monoubiquitinated protein deubiquitination|regulation of DNA repair|response to UV|ubiquitin-dependent protein catabolic process	nucleoplasm	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			breast(2)|kidney(1)|large_intestine(1)|lung(10)|ovary(2)|prostate(2)|stomach(1)	19		all_neural(321;0.0281)		BRCA - Breast invasive adenocarcinoma(111;8.01e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00245)|OV - Ovarian serous cystadenocarcinoma(397;0.0535)		ATACTTGCTATCTTAATAGTA	0.343000													31	36					0	0	0.00209593	0	0
HRG	3273	broad.mit.edu	37	3	186395211	186395211	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:186395211G>T	ENST00000232003.4	+	7	1197	c.1117G>T	c.(1117-1119)Gaa>Taa	p.E373*		NM_000412.2	NP_000403.1	P04196	HRG_HUMAN	histidine-rich glycoprotein	373	His/Pro-rich (HRR).				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			breast(1)|central_nervous_system(1)|endometrium(4)|large_intestine(12)|lung(13)|ovary(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	37	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		ccatcctcatgaacatgatac	0.517000													29	10					1.77063e-15	6.41665e-15	0.000878237	1	0
EPRS	2058	broad.mit.edu	37	1	220206926	220206926	+	Silent	SNP	G	G	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:220206926G>C	ENST00000366923.3	-	4	575	c.306C>G	c.(304-306)ctC>ctG	p.L102L		NM_004446.2	NP_004437.2	P07814	SYEP_HUMAN	glutamyl-prolyl-tRNA synthetase	102					glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			breast(2)|endometrium(11)|kidney(2)|large_intestine(13)|lung(24)|ovary(1)|prostate(3)|skin(2)|stomach(2)|urinary_tract(3)	63				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	GGCAATGATTGAGTTCATTAA	0.343000													20	77					0	0	0.00121646	0	0
CDKN2AIP	55602	broad.mit.edu	37	4	184368144	184368144	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr4:184368144A>G	ENST00000504169.1	+	3	1514	c.1307A>G	c.(1306-1308)aAg>aGg	p.K436R	CDKN2AIP_ENST00000302350.4_3'UTR	NM_017632.2	NP_060102.1	Q9NXV6	CARF_HUMAN	CDKN2A interacting protein	436					negative regulation of cell growth|positive regulation of signal transduction|regulation of protein stability	granular component|nucleoplasm	double-stranded RNA binding|p53 binding			endometrium(1)|kidney(2)|large_intestine(2)|lung(1)	6		all_lung(41;6.9e-12)|Lung NSC(41;1.28e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;1.15e-26)|Epithelial(43;2.98e-22)|OV - Ovarian serous cystadenocarcinoma(60;7.64e-10)|GBM - Glioblastoma multiforme(59;4.22e-06)|Colorectal(24;5.87e-06)|STAD - Stomach adenocarcinoma(60;2.09e-05)|COAD - Colon adenocarcinoma(29;5.15e-05)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		GTGAAACAGAAGCAACCTTTT	0.408000													24	38					0	0	0.00278032	0	0
SMURF1	57154	broad.mit.edu	37	7	98645385	98645385	+	Silent	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr7:98645385G>A	ENST00000361125.1	-	11	1471	c.1152C>T	c.(1150-1152)gtC>gtT	p.V384V	AC004893.11_ENST00000468960.2_RNA|AC004893.11_ENST00000482799.2_RNA|SMURF1_ENST00000361368.2_Silent_p.V358V	NM_020429.2	NP_065162.1	Q9HCE7	SMUF1_HUMAN	SMAD specific E3 ubiquitin protein ligase 1	384					BMP signaling pathway|cell differentiation|ectoderm development|negative regulation of BMP signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process|protein export from nucleus|protein localization at cell surface|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|plasma membrane	activin binding|I-SMAD binding|R-SMAD binding|ubiquitin-protein ligase activity			endometrium(3)|kidney(2)|large_intestine(5)|lung(11)|ovary(1)|skin(2)|urinary_tract(1)	25	all_cancers(62;1.05e-08)|all_epithelial(64;4.34e-09)|Lung NSC(181;0.00902)|all_lung(186;0.0145)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)|Lung(104;0.224)			CGTGTCTGAGGACTTTCAGCT	0.567000													123	97					0	0	0.00361006	0	0
BCL9	607	broad.mit.edu	37	1	147096739	147096739	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:147096739C>T	ENST00000234739.3	+	10	5000	c.4260C>T	c.(4258-4260)aaC>aaT	p.N1420N		NM_004326.2	NP_004317.2	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	1420					Wnt receptor signaling pathway	nucleus	protein binding			breast(1)|large_intestine(2)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)	7	all_hematologic(923;0.115)					GACCTGGCAACCCAGGAAACA	0.542000			T	"""IGH@, IGL@"""	B-ALL								18	15					0	0	0.000958276	0	0
KRT86	3892	broad.mit.edu	37	12	52699946	52699946	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:52699946A>G	ENST00000293525.5	+	7	1181	c.1129A>G	c.(1129-1131)Aag>Gag	p.K377E	KRT86_ENST00000423955.2_Missense_Mutation_p.K377E|KRT86_ENST00000544024.1_Missense_Mutation_p.K377E	NM_002284.3	NP_002275.1	O43790	KRT86_HUMAN	keratin 86	377	Coil 2.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|cervix(1)|large_intestine(1)|lung(5)|ovary(1)|skin(1)	10				BRCA - Breast invasive adenocarcinoma(357;0.189)		TGCCCTGCAGAAGGCCAAGCA	0.642000											OREG0021845	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	76					0	0	0.00375469	0	0
SHANK3	85358	broad.mit.edu	37	22	51117039	51117039	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr22:51117039C>T	ENST00000414786.2	+	4	593	c.366C>T	c.(364-366)taC>taT	p.Y122Y	SHANK3_ENST00000445220.2_Silent_p.Y122Y|SHANK3_ENST00000262795.3_Silent_p.Y122Y			F2Z3L0	F2Z3L0_HUMAN	SH3 and multiple ankyrin repeat domains 3	122										central_nervous_system(1)|endometrium(1)|kidney(1)|lung(5)	8		all_cancers(38;3.75e-11)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.22)		TCATGGACTACGTCCAGCTGC	0.602000													8	17					0	0	0.00307968	0	0
KIAA1715	80856	broad.mit.edu	37	2	176794733	176794733	+	Missense_Mutation	SNP	C	C	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:176794733C>A	ENST00000272748.4	-	13	1496	c.1249G>T	c.(1249-1251)Gat>Tat	p.D417Y	KIAA1715_ENST00000535310.1_3'UTR|KIAA1715_ENST00000544803.1_Missense_Mutation_p.D448Y	NM_030650.1	NP_085153.1	Q9C0E8	LNP_HUMAN	KIAA1715	417						integral to membrane	protein binding			endometrium(1)|large_intestine(4)|lung(12)|ovary(2)|skin(1)	20			OV - Ovarian serous cystadenocarcinoma(117;0.0793)			AGTTCAGGATCAGGAATAGAA	0.428000													24	61					1.64293e-13	5.80503e-13	0.00332997	1	0
MACC1	346389	broad.mit.edu	37	7	20198105	20198105	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr7:20198105C>T	ENST00000400331.5	-	5	2187	c.1879G>A	c.(1879-1881)Gat>Aat	p.D627N	MACC1_ENST00000589011.1_Missense_Mutation_p.D627N|MACC1_ENST00000332878.4_Missense_Mutation_p.D627N	NM_182762.3	NP_877439.3	Q6ZN28	MACC1_HUMAN	metastasis associated in colon cancer 1	627					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			endometrium(1)|kidney(1)|large_intestine(15)|lung(12)|ovary(2)|prostate(1)|skin(3)|soft_tissue(1)|stomach(2)|upper_aerodigestive_tract(1)	39						AAGACACTATCTGACATAAAC	0.353000													33	76					0	0	0.00209593	0	0
MAML2	84441	broad.mit.edu	37	11	95825060	95825060	+	Missense_Mutation	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr11:95825060C>G	ENST00000524717.1	-	2	3419	c.2135G>C	c.(2134-2136)aGa>aCa	p.R712T		NM_032427.1	NP_115803.1	Q8IZL2	MAML2_HUMAN	mastermind-like 2 (Drosophila)	712					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity		CRTC3/MAML2(26)|CRTC1/MAML2(516)	breast(2)|cervix(1)|endometrium(11)|kidney(4)|large_intestine(8)|lung(12)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	43		Acute lymphoblastic leukemia(157;2.63e-05)|all_hematologic(158;0.00837)				CCTTACCTGTCTCTGTTGTTG	0.443000			T	"""MECT1, CRTC3"""	salivary gland mucoepidermoid								9	6					0	0	0.000978159	0	0
RBM41	55285	broad.mit.edu	37	X	106358744	106358744	+	Missense_Mutation	SNP	G	G	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chrX:106358744G>C	ENST00000372487.1	-	4	387	c.361C>G	c.(361-363)Ctt>Gtt	p.L121V	RBM41_ENST00000471079.1_5'UTR|RBM41_ENST00000203616.8_Missense_Mutation_p.L121V|RBM41_ENST00000372479.3_Missense_Mutation_p.L121V	NM_001171080.1	NP_001164551.1	Q96IZ5	RBM41_HUMAN	RNA binding motif protein 41	121							nucleotide binding|RNA binding			breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|lung(5)|ovary(1)|upper_aerodigestive_tract(1)	13						ATATCTTGAAGACGGTTCTGT	0.463000													32	13					0	0	0.00209593	0	0
ZBTB37	84614	broad.mit.edu	37	1	173839375	173839375	+	Silent	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:173839375T>C	ENST00000367704.1	+	3	411	c.12T>C	c.(10-12)ggT>ggC	p.G4G	ZBTB37_ENST00000427304.1_Silent_p.G4G|ZBTB37_ENST00000367702.1_Silent_p.G4G|ZBTB37_ENST00000432989.1_Silent_p.G4G|ZBTB37_ENST00000367701.4_Silent_p.G4G			Q5TC79	ZBT37_HUMAN	zinc finger and BTB domain containing 37	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(1)|large_intestine(1)|lung(4)|ovary(1)|prostate(1)|skin(1)|urinary_tract(4)	13						TGGAGAAAGGTGGGAACATAC	0.443000													16	22					0	0	0.00316338	0	0
LOC645752	645752	broad.mit.edu	37	15	78211517	78211517	+	RNA	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr15:78211517C>G	ENST00000565869.1	+	0	111				RP11-114H24.2_ENST00000567226.1_RNA																							TTGCTCAGGACACTCAAGGCC	0.557000													4	253					0	0	0.00024832	0	0
OXSM	54995	broad.mit.edu	37	3	25832618	25832618	+	Missense_Mutation	SNP	C	C	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:25832618C>A	ENST00000280701.3	+	2	206	c.107C>A	c.(106-108)cCa>cAa	p.P36Q	OXSM_ENST00000449808.1_3'UTR|OXSM_ENST00000420173.2_Missense_Mutation_p.P36Q	NM_017897.2	NP_060367.1	Q9NWU1	OXSM_HUMAN	3-oxoacyl-ACP synthase, mitochondrial	36					acyl-CoA metabolic process|medium-chain fatty acid biosynthetic process|short-chain fatty acid biosynthetic process	mitochondrion	3-oxoacyl-[acyl-carrier-protein] synthase activity			breast(1)|cervix(1)|endometrium(1)|kidney(3)|large_intestine(5)|lung(9)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	25						GGAACTGTGCCAATATCCAGA	0.423000													46	32					4.06502e-11	1.42444e-10	0.00321405	1	0
MORC2	22880	broad.mit.edu	37	22	31330915	31330915	+	Silent	SNP	G	G	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr22:31330915G>C	ENST00000215862.4	-	20	3223	c.1860C>G	c.(1858-1860)gtC>gtG	p.V620V	MORC2_ENST00000397641.2_Silent_p.V682V	NM_014941.1	NP_055756.1	Q9Y6X9	MORC2_HUMAN	MORC family CW-type zinc finger 2	682							ATP binding|zinc ion binding			breast(2)|kidney(2)|large_intestine(5)|lung(4)|ovary(2)|pancreas(1)|skin(4)|upper_aerodigestive_tract(1)	21						ATGCAGTCTTGACGAGAGTGT	0.602000													26	56					0	0	0.00127121	0	0
PTGFRN	5738	broad.mit.edu	37	1	117484584	117484584	+	Silent	SNP	C	C	T	rs149801733		TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:117484584C>T	ENST00000393203.2	+	2	444	c.297C>T	c.(295-297)aaC>aaT	p.N99N		NM_020440.2	NP_065173.2	Q9P2B2	FPRP_HUMAN	prostaglandin F2 receptor inhibitor	99	Ig-like C2-type 1.					endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	protein binding			NS(1)|breast(1)|endometrium(4)|large_intestine(10)|liver(1)|lung(22)|ovary(1)|prostate(4)|stomach(1)|upper_aerodigestive_tract(1)	46	Lung SC(450;0.225)	all_cancers(81;0.00104)|all_lung(203;8.97e-05)|all_epithelial(167;0.000139)|Lung NSC(69;0.000446)		Lung(183;0.0704)|LUSC - Lung squamous cell carcinoma(189;0.227)|Colorectal(144;0.248)		GGACTGCCAACGACGCCGTGG	0.587000													5	27					0	0	0.000602214	0	0
PIK3CA	5290	broad.mit.edu	37	3	178921501	178921501	+	Missense_Mutation	SNP	G	G	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:178921501G>C	ENST00000263967.3	+	5	1140	c.983G>C	c.(982-984)tGg>tCg	p.W328S		NM_006218.2	NP_006209.2	P42336	PK3CA_HUMAN	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha	328					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			NS(16)|autonomic_ganglia(4)|biliary_tract(22)|bone(1)|breast(2150)|central_nervous_system(110)|cervix(33)|endometrium(473)|eye(1)|haematopoietic_and_lymphoid_tissue(35)|kidney(14)|large_intestine(1202)|liver(42)|lung(202)|meninges(1)|oesophagus(28)|ovary(235)|pancreas(17)|penis(8)|pituitary(12)|prostate(10)|skin(155)|small_intestine(1)|soft_tissue(18)|stomach(121)|thyroid(80)|upper_aerodigestive_tract(70)|urinary_tract(208)	5269	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			AAATCCCTTTGGGTTATAAAT	0.358000		57	Mis		"""colorectal, gastric, gliobastoma, breast"""					HNSCC(19;0.045)|TSP Lung(28;0.18)			28	328					0	0	0.00106085	0	0
TAF2	6873	broad.mit.edu	37	8	120809913	120809913	+	Missense_Mutation	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr8:120809913C>G	ENST00000378164.2	-	7	1264	c.966G>C	c.(964-966)atG>atC	p.M322I		NM_003184.3	NP_003175.1	Q6P1X5	TAF2_HUMAN	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa	322					G2/M transition of mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor TFIID complex|transcription factor TFTC complex	metallopeptidase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			NS(2)|breast(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(10)|lung(21)|ovary(2)|skin(3)|upper_aerodigestive_tract(1)	49	Lung NSC(37;9.35e-07)|Ovarian(258;0.011)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			TAAAAATGCTCATGGAAGCAT	0.338000													11	25					0	0	0.00185496	0	0
MDGA2	161357	broad.mit.edu	37	14	47351355	47351355	+	Missense_Mutation	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr14:47351355T>A	ENST00000426342.1	-	11	2160	c.1414A>T	c.(1414-1416)Aca>Tca	p.T472S	MDGA2_ENST00000399232.2_Missense_Mutation_p.T770S|MDGA2_ENST00000357362.3_Missense_Mutation_p.T472S|MDGA2_ENST00000439988.2_Missense_Mutation_p.T701S|MDGA2_ENST00000399222.3_5'UTR	NM_182830.3	NP_878250.2	Q7Z553	MDGA2_HUMAN	MAM domain containing glycosylphosphatidylinositol anchor 2	701	Ig-like 5.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				breast(3)|endometrium(4)|kidney(2)|large_intestine(14)|lung(41)|ovary(4)|pancreas(1)|prostate(1)|stomach(1)|upper_aerodigestive_tract(5)	76						AAGTTATATGTAATTAATTCT	0.373000													18	17					0	0	0.000958276	0	0
ZNF507	22847	broad.mit.edu	37	19	32844889	32844889	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:32844889A>G	ENST00000311921.3	+	2	1345	c.1153A>G	c.(1153-1155)Atc>Gtc	p.I385V	ZNF507_ENST00000587084.1_3'UTR|ZNF507_ENST00000544431.1_Missense_Mutation_p.I385V|ZNF507_ENST00000355898.5_Missense_Mutation_p.I385V	NM_001136156.1|NM_014910.4	NP_001129628.1|NP_055725.2	Q8TCN5	ZN507_HUMAN	zinc finger protein 507	385					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			NS(2)|breast(1)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(10)|ovary(1)|pancreas(1)|skin(2)|urinary_tract(1)	31	Esophageal squamous(110;0.162)					ACAGAAAATCATCAGCAGCAG	0.458000													29	44					0	0	0.00106085	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117364750	117364750	+	Missense_Mutation	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr7:117364750C>G	ENST00000160373.3	-	19	4389	c.4298G>C	c.(4297-4299)aGt>aCt	p.S1433T		NM_033427.2	NP_219499.1	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1433										breast(3)|central_nervous_system(3)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(13)|lung(36)|ovary(4)|prostate(5)|skin(5)|upper_aerodigestive_tract(3)|urinary_tract(1)	83	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		TAAAGGGAAACTTCCTCCTTT	0.418000													6	29					0	0	0.000274275	0	0
PCDHB4	56131	broad.mit.edu	37	5	140502789	140502789	+	Silent	SNP	A	A	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr5:140502789A>T	ENST00000194152.1	+	1	1209	c.1209A>T	c.(1207-1209)gtA>gtT	p.V403V		NM_018938.2	NP_061761.1	Q9Y5E5	PCDB4_HUMAN		403	Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			autonomic_ganglia(1)|breast(2)|endometrium(4)|kidney(2)|large_intestine(12)|lung(35)|ovary(1)|pancreas(1)|prostate(1)|skin(4)|upper_aerodigestive_tract(3)|urinary_tract(1)	67			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACACCCTGGTAACAGAGAGAC	0.448000													32	19					0	0	0.001512	0	0
FAT1	2195	broad.mit.edu	37	4	187540589	187540589	+	Missense_Mutation	SNP	T	T	C	rs139480903	by1000genomes	TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr4:187540589T>C	ENST00000441802.2	-	10	7360	c.7151A>G	c.(7150-7152)aAt>aGt	p.N2384S		NM_005245.3	NP_005236.2	Q14517	FAT1_HUMAN	FAT atypical cadherin 1	2384	Cadherin 21.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			NS(1)|breast(3)|central_nervous_system(3)|endometrium(38)|haematopoietic_and_lymphoid_tissue(2)|kidney(12)|large_intestine(33)|lung(88)|ovary(13)|pancreas(2)|prostate(16)|skin(2)|upper_aerodigestive_tract(11)|urinary_tract(4)	228						TGGATTATCATTGAGGTCGGT	0.502000										HNSCC(5;0.00058)			18	39					0	0	0.000566183	0	0
OSBPL11	114885	broad.mit.edu	37	3	125271261	125271261	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:125271261A>G	ENST00000296220.5	-	9	1707	c.1418T>C	c.(1417-1419)tTt>tCt	p.F473S		NM_022776.4	NP_073613.2	Q9BXB4	OSB11_HUMAN	oxysterol binding protein-like 11	473					lipid transport		lipid binding			NS(1)|breast(1)|cervix(1)|kidney(2)|large_intestine(8)|lung(9)|ovary(3)|prostate(1)|skin(1)	27						AGAACTGCTAAAAACACTGGA	0.453000													15	27					0	0	0.00244969	0	0
UQCRFS1	7386	broad.mit.edu	37	19	29698472	29698472	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:29698472T>C	ENST00000304863.4	-	2	1230	c.808A>G	c.(808-810)Atg>Gtg	p.M270V		NM_006003.2	NP_005994.2	P47985	UCRI_HUMAN	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	270	Rieske.				respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex III	2 iron, 2 sulfur cluster binding|metal ion binding|ubiquinol-cytochrome-c reductase activity			endometrium(4)|kidney(2)|large_intestine(2)|lung(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	14	Breast(6;0.0545)|Esophageal squamous(110;0.239)		Lung(7;0.092)			ACAATCACCATATCGTCACTG	0.473000													14	26					0	0	0.00316338	0	0
RTN4IP1	84816	broad.mit.edu	37	6	107031256	107031256	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr6:107031256T>C	ENST00000369063.3	-	8	1495	c.1030A>G	c.(1030-1032)Atg>Gtg	p.M344V	RTN4IP1_ENST00000498091.1_5'UTR|RTN4IP1_ENST00000539449.1_Silent_p.S220S	NM_032730.4	NP_116119.2	Q8WWV3	RT4I1_HUMAN	reticulon 4 interacting protein 1	344						mitochondrion	oxidoreductase activity|zinc ion binding			breast(1)|kidney(3)|large_intestine(2)|lung(6)|urinary_tract(1)	13	Breast(9;0.0107)|all_epithelial(6;0.14)	all_cancers(87;9.45e-05)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.0144)	Epithelial(6;0.000873)|all cancers(7;0.00363)|BRCA - Breast invasive adenocarcinoma(8;0.00721)|OV - Ovarian serous cystadenocarcinoma(5;0.0394)	all cancers(137;0.113)|BRCA - Breast invasive adenocarcinoma(108;0.127)|Epithelial(106;0.144)		CCACTGGCCATGAAAAATGCC	0.413000													20	28					0	0	0.00188189	0	0
CBFA2T3	863	broad.mit.edu	37	16	88951552	88951552	+	Missense_Mutation	SNP	G	G	A	rs151180006		TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr16:88951552G>A	ENST00000268679.4	-	7	1415	c.1019C>T	c.(1018-1020)cCg>cTg	p.P340L	CBFA2T3_ENST00000448839.1_Missense_Mutation_p.P264L|CBFA2T3_ENST00000327483.5_Missense_Mutation_p.P254L|CBFA2T3_ENST00000360302.2_Missense_Mutation_p.P254L|CBFA2T3_ENST00000436887.2_Missense_Mutation_p.P302L|RP11-830F9.5_ENST00000565053.1_RNA	NM_005187.5	NP_005178.4	O75081	MTG16_HUMAN	core-binding factor, runt domain, alpha subunit 2; translocated to, 3	340	Mediates interaction with PDE7A (in isoform 2).|Mediates localization to the nucleus (By similarity).				cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			endometrium(3)|kidney(2)|large_intestine(4)|lung(5)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	17				BRCA - Breast invasive adenocarcinoma(80;0.0275)		GCGGTAGTGCGGCGGCGGTGT	0.697000			T	RUNX1	AML								7	19					0	0	0.00198382	0	0
PTPRB	5787	broad.mit.edu	37	12	70983891	70983891	+	Missense_Mutation	SNP	C	C	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:70983891C>A	ENST00000334414.6	-	8	1947	c.1903G>T	c.(1903-1905)Gtg>Ttg	p.V635L	PTPRB_ENST00000451516.2_Intron|PTPRB_ENST00000538708.1_Missense_Mutation_p.V417L|PTPRB_ENST00000261266.5_Missense_Mutation_p.V417L|PTPRB_ENST00000538174.2_5'UTR|PTPRB_ENST00000551525.1_Missense_Mutation_p.V634L|PTPRB_ENST00000550857.1_Intron|PTPRB_ENST00000550358.1_Missense_Mutation_p.V635L	NM_001109754.2	NP_001103224.1	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	417	Fibronectin type-III 7.				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|central_nervous_system(2)|endometrium(13)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(8)|lung(46)|prostate(4)|skin(18)|upper_aerodigestive_tract(1)|urinary_tract(3)	107	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGCAGCACCACAGAATCATTG	0.512000											OREG0021990	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	51	78					2.43468e-25	8.89918e-25	0.00361006	1	0
SLC2A6	11182	broad.mit.edu	37	9	136338606	136338606	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr9:136338606G>A	ENST00000371899.4	-	8	1230	c.1153C>T	c.(1153-1155)Cag>Tag	p.Q385*	SLC2A6_ENST00000485978.1_5'UTR|SLC2A6_ENST00000371897.4_Intron	NM_017585.3	NP_060055.2	Q9UGQ3	GTR6_HUMAN	solute carrier family 2 (facilitated glucose transporter), member 6	385						integral to membrane|plasma membrane	D-glucose transmembrane transporter activity			cervix(1)|endometrium(1)|large_intestine(1)|lung(3)|prostate(3)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(145;8.47e-08)|Epithelial(140;9.37e-07)|all cancers(34;1.03e-05)		GCCAGGGGCTGCGCCAAGTCC	0.662000													8	20					0	0	0.00307968	0	0
MIIP	60672	broad.mit.edu	37	1	12081875	12081875	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:12081875C>T	ENST00000235332.4	+	2	261	c.92C>T	c.(91-93)tCa>tTa	p.S31L	MIIP_ENST00000436478.2_Missense_Mutation_p.S31L	NM_021933.3	NP_068752.2	Q5JXC2	MIIP_HUMAN	migration and invasion inhibitory protein	31										autonomic_ganglia(1)|kidney(1)|large_intestine(4)|lung(5)|ovary(1)|prostate(2)|skin(1)	15						GTGCGGCGGTCAGTGGCCAGG	0.662000													5	27					0	0	0.00116845	0	0
RWDD3	25950	broad.mit.edu	37	1	95710106	95710106	+	Missense_Mutation	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:95710106C>G	ENST00000429514.2	+	3	586	c.380C>G	c.(379-381)aCt>aGt	p.T127S	RP11-57H12.5_ENST00000444665.1_RNA|RWDD3_ENST00000495272.1_3'UTR|RP11-57H12.6_ENST00000604534.1_3'UTR|RWDD3_ENST00000370202.4_Missense_Mutation_p.T142S|RWDD3_ENST00000263893.6_Missense_Mutation_p.T142S			Q9Y3V2	RWDD3_HUMAN	RWD domain containing 3	142						cytoplasm|nucleus	protein binding			kidney(1)|large_intestine(2)|lung(6)|ovary(1)	10		all_epithelial(167;5.99e-05)|all_lung(203;0.00168)|Lung NSC(277;0.00769)		all cancers(265;0.112)|Epithelial(280;0.229)		TTGTGGATAACTCTTTTGCAT	0.418000													12	59					0	0	0.000978159	0	0
ZNF225	7768	broad.mit.edu	37	19	44636171	44636171	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:44636171C>T	ENST00000262894.6	+	5	1684	c.1404C>T	c.(1402-1404)gcC>gcT	p.A468A	ZNF225_ENST00000590612.1_Silent_p.A468A|ZNF225_ENST00000592780.1_3'UTR	NM_013362.2	NP_037494.2	Q9UK10	ZN225_HUMAN	zinc finger protein 225	468					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			NS(1)|breast(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(7)|skin(1)|stomach(1)	16		Prostate(69;0.0352)|all_neural(266;0.202)				TTGGCTGGGCCTCGTGTCTTT	0.418000													27	34					0	0	0.000720815	0	0
GTPBP4	23560	broad.mit.edu	37	10	1038576	1038576	+	Missense_Mutation	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr10:1038576C>G	ENST00000360803.4	+	2	278	c.196C>G	c.(196-198)Cta>Gta	p.L66V	GTPBP4_ENST00000491635.1_3'UTR|GTPBP4_ENST00000545048.1_Missense_Mutation_p.L19V|GTPBP4_ENST00000538293.1_5'UTR	NM_012341.2	NP_036473.2	Q9BZE4	NOG1_HUMAN	GTP binding protein 4	66					negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			endometrium(2)|kidney(1)|large_intestine(3)|lung(11)|ovary(1)|prostate(2)|skin(1)	21		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		TTCACAAATTCTAACAGATTT	0.348000													15	24					0	0	0.00316338	0	0
SLC47A2	146802	broad.mit.edu	37	17	19583338	19583338	+	Silent	SNP	T	T	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr17:19583338T>G	ENST00000350657.5	-	17	1623	c.1449A>C	c.(1447-1449)tcA>tcC	p.S483S	SLC47A2_ENST00000463318.1_5'UTR|SLC47A2_ENST00000325411.5_Silent_p.S505S	NM_001099646.1|NM_001256663.1	NP_001093116.1|NP_001243592.1	Q86VL8	S47A2_HUMAN	solute carrier family 47 (multidrug and toxin extrusion), member 2	505						integral to membrane|plasma membrane	drug:hydrogen antiporter activity			endometrium(2)|kidney(3)|large_intestine(2)|lung(1)|ovary(1)	9	all_cancers(12;2.3e-05)|all_epithelial(12;0.0024)|Breast(13;0.245)					GCTGCCGGCCTGAATGTTTCT	0.498000													14	24					0	0	0.00244969	0	0
PHC3	80012	broad.mit.edu	37	3	169824653	169824653	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:169824653G>T	ENST00000494943.1	-	12	2467	c.2399C>A	c.(2398-2400)tCa>tAa	p.S800*	PHC3_ENST00000495893.1_Nonsense_Mutation_p.S812*|PHC3_ENST00000467570.1_Nonsense_Mutation_p.S759*			Q8NDX5	PHC3_HUMAN	polyhomeotic homolog 3 (Drosophila)	800					multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(12)|ovary(1)|upper_aerodigestive_tract(2)	26	all_cancers(22;2.67e-22)|all_epithelial(15;4.73e-27)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0655)			GAATCGTTTTGACCGCAAAAA	0.373000													13	124					9.31168e-06	3.13345e-05	0.00185496	1	0
OR1L4	254973	broad.mit.edu	37	9	125486501	125486501	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr9:125486501T>C	ENST00000259466.1	+	1	233	c.233T>C	c.(232-234)aTa>aCa	p.I78T		NM_001005235.1	NP_001005235.1	Q8NGR5	OR1L4_HUMAN	olfactory receptor, family 1, subfamily L, member 4	78					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)|large_intestine(3)|lung(13)|prostate(1)|skin(1)	20						ACAACAGTCATAGTGCCTAAG	0.443000													34	100					0	0	0.00327116	0	0
ABR	29	broad.mit.edu	37	17	1028581	1028581	+	Silent	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr17:1028581G>A	ENST00000544583.2	-	2	644	c.45C>T	c.(43-45)agC>agT	p.S15S	ABR_ENST00000302538.5_Silent_p.S61S|ABR_ENST00000574437.1_Silent_p.S15S	NM_001159746.2	NP_001153218.1	Q12979	ABR_HUMAN	active BCR-related	61					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(1)|cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(6)|lung(12)|ovary(2)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	39				UCEC - Uterine corpus endometrioid carcinoma (25;0.0228)		GGCTGCGGGCGCTGAGCTGCG	0.662000													33	70					0	0	0.00283554	0	0
TMEM194A	23306	broad.mit.edu	37	12	57457026	57457026	+	Silent	SNP	G	G	A	rs148717635	byFrequency	TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:57457026G>A	ENST00000300128.4	-	7	879	c.856C>T	c.(856-858)Ctg>Ttg	p.L286L	TMEM194A_ENST00000379391.3_Silent_p.L213L	NM_001130963.1	NP_001124435.1	O14524	T194A_HUMAN	transmembrane protein 194A	286						integral to membrane				endometrium(3)|large_intestine(3)|lung(2)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	12						AGGCCCATCAGCTGCAAGGTC	0.443000													52	81					0	0	0.00361006	0	0
SAMD11	148398	broad.mit.edu	37	1	866467	866467	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:866467C>T	ENST00000342066.3	+	4	386	c.303C>T	c.(301-303)tgC>tgT	p.C101C		NM_152486.2	NP_689699.2	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	101						nucleus				breast(1)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(2)|lung(4)|ovary(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	15	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		AGGCGTCCTGCAGGTAGGAGC	0.637000													21	31					0	0	0.00188189	0	0
OLFM4	10562	broad.mit.edu	37	13	53624472	53624472	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr13:53624472G>A	ENST00000219022.2	+	5	1177	c.1099G>A	c.(1099-1101)Gct>Act	p.A367T		NM_006418.4	NP_006409.3	Q6UX06	OLFM4_HUMAN	olfactomedin 4	367	Olfactomedin-like.				cell adhesion	extracellular space				breast(2)|endometrium(4)|kidney(4)|large_intestine(5)|lung(20)|skin(3)|urinary_tract(1)	39		Breast(56;0.000776)|Lung NSC(96;0.000814)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.13e-08)		TCTCCCTAATGCTGCCTATAA	0.408000													32	46					0	0	0.0024448	0	0
SPATA31D5P	347127	broad.mit.edu	37	9	84532706	84532706	+	RNA	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr9:84532706T>A	ENST00000527857.1	+	0	2728					NR_026851.1																						TTTCCTTCCTTAGTTCCAACA	0.433000													12	35					0	0	0.000978159	0	0
OR10Q1	219960	broad.mit.edu	37	11	57995517	57995517	+	Silent	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr11:57995517G>A	ENST00000316770.2	-	1	873	c.831C>T	c.(829-831)agC>agT	p.S277S		NM_001004471.2	NP_001004471.1	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q, member 1	277					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			autonomic_ganglia(1)|breast(1)|endometrium(2)|kidney(1)|large_intestine(2)|lung(26)|ovary(2)	35		Breast(21;0.0589)				ACGCGATTTGGCTGTCCTCAT	0.557000													28	60					0	0	0.00127121	0	0
KALRN	8997	broad.mit.edu	37	3	124211627	124211627	+	Missense_Mutation	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:124211627T>A	ENST00000360013.3	+	32	4851	c.4724T>A	c.(4723-4725)aTt>aAt	p.I1575N	KALRN_ENST00000460856.1_Missense_Mutation_p.I1566N|KALRN_ENST00000240874.3_Missense_Mutation_p.I1575N	NM_001024660.3	NP_001019831.2	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase	1575	PH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			NS(1)|breast(1)|central_nervous_system(1)|cervix(2)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(21)|lung(28)|ovary(4)|prostate(5)|skin(6)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(3)	83						ATCAAGAACATTCGAGAAGTG	0.463000													24	46					0	0	0.00229938	0	0
M1AP	130951	broad.mit.edu	37	2	74802648	74802648	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:74802648T>A	ENST00000290536.5	-	7	1107	c.991A>T	c.(991-993)Aga>Tga	p.R331*	M1AP_ENST00000409585.1_Nonsense_Mutation_p.R331*|M1AP_ENST00000464686.1_5'UTR|M1AP_ENST00000358434.2_Nonsense_Mutation_p.R49*|M1AP_ENST00000536235.1_Nonsense_Mutation_p.R331*	NM_138804.3	NP_620159.2			meiosis 1 associated protein																		CTTGTAGGTCTGAGGATGAAC	0.483000													40	64					0	0	0.00148497	0	0
SLC6A18	348932	broad.mit.edu	37	5	1244337	1244337	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr5:1244337T>C	ENST00000324642.3	+	10	1468	c.1345T>C	c.(1345-1347)Tgc>Cgc	p.C449R	SLC6A18_ENST00000296821.4_Intron	NM_182632.2	NP_872438.2	Q96N87	S6A18_HUMAN	solute carrier family 6 (neutral amino acid transporter), member 18	449					cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			endometrium(1)|kidney(2)|large_intestine(3)|lung(16)|ovary(1)|prostate(1)|skin(5)|stomach(4)|upper_aerodigestive_tract(1)	34	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			AGGGCTGGTCTGCCTGGTCTG	0.627000													26	37					0	0	0.00395357	0	0
MUC16	94025	broad.mit.edu	37	19	9046408	9046408	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:9046408C>T	ENST00000397910.4	-	5	35426	c.35223G>A	c.(35221-35223)gaG>gaA	p.E11741E		NM_024690.2	NP_078966.2	Q8WXI7	MUC16_HUMAN	mucin 16, cell surface associated	11743	Thr-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			NS(9)|autonomic_ganglia(1)|breast(26)|central_nervous_system(11)|cervix(1)|endometrium(46)|haematopoietic_and_lymphoid_tissue(5)|kidney(35)|large_intestine(91)|liver(1)|lung(278)|ovary(17)|pancreas(2)|prostate(17)|skin(18)|soft_tissue(1)|stomach(8)|upper_aerodigestive_tract(16)|urinary_tract(7)	590						AAGTCACCATCTCTGGTGCAC	0.493000													44	52					0	0	0.00195071	0	0
CENPT	80152	broad.mit.edu	37	16	67865170	67865170	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr16:67865170C>T	ENST00000562787.1	-	10	1200	c.652G>A	c.(652-654)Gac>Aac	p.D218N	CENPT_ENST00000219172.3_Missense_Mutation_p.D218N|CENPT_ENST00000564817.1_Missense_Mutation_p.D218N|CENPT_ENST00000440851.2_Missense_Mutation_p.D218N|CENPT_ENST00000445712.2_Missense_Mutation_p.D115N|CENPT_ENST00000562947.1_5'UTR	NM_025082.3	NP_079358.3	Q96BT3	CENPT_HUMAN	centromere protein T	218					mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleus	DNA binding			NS(1)|breast(2)|lung(6)|urinary_tract(1)	10		Acute lymphoblastic leukemia(13;0.000299)|all_hematologic(13;0.0184)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00429)|Epithelial(162;0.019)|all cancers(182;0.124)		GCACCCACGTCTACAGCTCGG	0.607000													37	31					0	0	0.00428921	0	0
PDGFD	80310	broad.mit.edu	37	11	103780424	103780424	+	Nonstop_Mutation	SNP	A	A	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr11:103780424A>T	ENST00000302251.5	-	7	1544	c.1093T>A	c.(1093-1095)Taa>Aaa	p.*365K	PDGFD_ENST00000393158.2_Nonstop_Mutation_p.*371K	NM_025208.4|NM_033135.3	NP_079484.1|NP_149126.1	Q9GZP0	PDGFD_HUMAN	platelet derived growth factor D	0					positive regulation of cell division	endoplasmic reticulum lumen|extracellular region|Golgi membrane	growth factor activity			biliary_tract(1)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(8)|prostate(3)|upper_aerodigestive_tract(1)	23		Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Melanoma(852;0.0563)|all_neural(303;0.165)		BRCA - Breast invasive adenocarcinoma(274;0.00136)|Epithelial(105;0.111)		ACATTCTCTTATCGAGGTGGT	0.443000													10	68					0	0	0.000978159	0	0
ZNF107	51427	broad.mit.edu	37	7	64166764	64166764	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr7:64166764A>G	ENST00000395391.1	+	4	1457	c.82A>G	c.(82-84)Aaa>Gaa	p.K28E	ZNF107_ENST00000344930.3_Missense_Mutation_p.K28E|ZNF107_ENST00000423627.1_Missense_Mutation_p.K28E			Q9UII5	ZN107_HUMAN	zinc finger protein 107	28					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|central_nervous_system(1)|cervix(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(10)|lung(18)|ovary(1)|stomach(1)	37		Lung NSC(55;0.00948)|all_lung(88;0.0249)				TTCTTTCCAGAAAGTGACACT	0.363000													26	25					0	0	0.00209593	0	0
ALK	238	broad.mit.edu	37	2	29456487	29456487	+	Missense_Mutation	SNP	C	C	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:29456487C>A	ENST00000389048.3	-	14	3337	c.2431G>T	c.(2431-2433)Gtg>Ttg	p.V811L	ALK_ENST00000431873.1_Intron	NM_004304.4	NP_004295.2	Q9UM73	ALK_HUMAN	anaplastic lymphoma receptor tyrosine kinase	811					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity	p.V811M(1)	ATIC/ALK(24)|FN1/ALK(2)|C2orf44/ALK(2)|TPM3/ALK(33)|KLC1/ALK(2)|VCL/ALK(4)|TPM4/ALK(12)|KIF5B/ALK(8)|RANBP2/ALK(34)|SQSTM1/ALK(2)|EML4/ALK(543)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|NPM1/ALK(632)|CLTC/ALK(44)|CARS/ALK(5)|MSN/ALK(6)|TFG/ALK(9)	NS(2)|autonomic_ganglia(198)|breast(8)|central_nervous_system(2)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(7)|kidney(4)|large_intestine(25)|lung(61)|ovary(6)|pancreas(1)|prostate(2)|skin(5)|soft_tissue(3)|stomach(2)|thyroid(2)	340	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CACTCATGCACGCTTCTGTTC	0.488000			"""T, Mis, A"""	"""NPM1, TPM3, TFG, TPM4, ATIC, CLTC, MSN, ALO17, CARS, EML4, KIF5B, C2orf22"""	"""ALCL, NSCLC, Neuroblastoma"""	neuroblastoma			Neuroblastoma, Familial Clustering of;Congenital Central Hypoventilation Syndrome				35	61					1.26612e-14	4.51121e-14	0.00327116	1	0
AGTR1	185	broad.mit.edu	37	3	148458977	148458977	+	Missense_Mutation	SNP	T	T	C	rs150629733	byFrequency	TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:148458977T>C	ENST00000542281.1	+	4	601	c.155T>C	c.(154-156)gTc>gCc	p.V52A	AGTR1_ENST00000418473.2_Missense_Mutation_p.V52A|AGTR1_ENST00000349243.3_Missense_Mutation_p.V52A|AGTR1_ENST00000402260.1_Missense_Mutation_p.V52A|AGTR1_ENST00000497524.1_Missense_Mutation_p.V52A|AGTR1_ENST00000461609.1_Missense_Mutation_p.V52A|AGTR1_ENST00000475347.1_Missense_Mutation_p.V52A|AGTR1_ENST00000474935.1_Missense_Mutation_p.V52A|AGTR1_ENST00000404754.2_Missense_Mutation_p.V52A	NM_031850.3	NP_114038.4	P30556	AGTR1_HUMAN	angiotensin II receptor, type 1	52					calcium-mediated signaling|cell chemotaxis|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|kidney development|low-density lipoprotein particle remodeling|positive regulation of cellular protein metabolic process|positive regulation of cholesterol esterification|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of phospholipase A2 activity|positive regulation of reactive oxygen species metabolic process|regulation of cell growth|regulation of cell proliferation|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|Rho protein signal transduction		acetyltransferase activator activity|angiotensin type I receptor activity|angiotensin type II receptor activity|bradykinin receptor binding|protein heterodimerization activity			breast(4)|endometrium(3)|kidney(1)|large_intestine(5)|lung(13)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	30			LUSC - Lung squamous cell carcinoma(72;0.127)|Lung(72;0.152)		Candesartan(DB00796)|Eprosartan(DB00876)|Forasartan(DB01342)|Irbesartan(DB01029)|Losartan(DB00678)|Olmesartan(DB00275)|Saprisartan(DB01347)|Spironolactone(DB00421)|Tasosartan(DB01349)|Telmisartan(DB00966)|Valsartan(DB00177)	GTGGTGATAGTCATTTACTTT	0.378000													20	73					0	0	0.00121646	0	0
IL11RA	3590	broad.mit.edu	37	9	34655639	34655639	+	Silent	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr9:34655639G>A	ENST00000555003.1	+	3	1494	c.138G>A	c.(136-138)ctG>ctA	p.L46L	IL11RA_ENST00000602473.1_Silent_p.L46L|IL11RA_ENST00000441545.2_Silent_p.L46L|IL11RA_ENST00000478802.2_3'UTR|GALT_ENST00000556278.1_Silent_p.L190L|IL11RA_ENST00000378817.4_Silent_p.L46L|IL11RA_ENST00000318041.9_Silent_p.L46L			Q14626	I11RA_HUMAN	interleukin 11 receptor, alpha	46	Ig-like C2-type.					integral to plasma membrane	cytokine receptor activity			breast(1)|large_intestine(1)|ovary(1)|skin(1)	4	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.174)	Oprelvekin(DB00038)	CCGTGAAGCTGTGTTGTCCTG	0.582000													10	12					0	0	0.000673444	0	0
MPHOSPH8	54737	broad.mit.edu	37	13	20221396	20221396	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr13:20221396G>A	ENST00000361479.5	+	3	1251	c.1183G>A	c.(1183-1185)Gag>Aag	p.E395K	MPHOSPH8_ENST00000414242.2_Missense_Mutation_p.E395K	NM_017520.3	NP_059990.2	Q99549	MPP8_HUMAN	M-phase phosphoprotein 8	395					cell cycle	cytoplasm|nucleus				breast(2)|endometrium(1)|large_intestine(2)|lung(8)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	16		all_cancers(29;2.83e-16)|all_lung(29;1.16e-17)|all_epithelial(30;8.13e-16)|Lung NSC(5;6.91e-15)|Lung SC(185;0.0367)		all cancers(112;8.43e-05)|Epithelial(112;0.000426)|OV - Ovarian serous cystadenocarcinoma(117;0.00596)|Lung(94;0.015)|LUSC - Lung squamous cell carcinoma(192;0.0795)		GAGCGGGGAAGAGAGAGGCCT	0.542000													5	48					0	0	0.000602214	0	0
TMEFF2	23671	broad.mit.edu	37	2	193049123	193049123	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:193049123C>T	ENST00000409056.3	-	3	368	c.369G>A	c.(367-369)caG>caA	p.Q123Q	TMEFF2_ENST00000392314.1_Silent_p.Q123Q|TMEFF2_ENST00000272771.5_Silent_p.Q123Q			Q9UIK5	TEFF2_HUMAN	transmembrane protein with EGF-like and two follistatin-like domains 2	123	Kazal-like 1.					extracellular region|integral to membrane				breast(2)|cervix(1)|kidney(2)|large_intestine(4)|liver(1)|lung(12)|pancreas(1)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	27			OV - Ovarian serous cystadenocarcinoma(117;0.0835)			TCTCACTCTGCTGTTTGCATG	0.473000													25	43					0	0	0.00395357	0	0
C4orf29	80167	broad.mit.edu	37	4	128951815	128951815	+	Missense_Mutation	SNP	A	A	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr4:128951815A>T	ENST00000388795.5	+	12	1488	c.1085A>T	c.(1084-1086)cAa>cTa	p.Q362L	C4orf29_ENST00000444616.1_Missense_Mutation_p.Q410L|C4orf29_ENST00000398965.1_Missense_Mutation_p.Q410L			Q0P651	CD029_HUMAN	chromosome 4 open reading frame 29	410						extracellular region				breast(1)|endometrium(1)|kidney(2)|large_intestine(1)|lung(1)|ovary(1)|urinary_tract(1)	8						CTTTTTAAACAAGGACTCTTC	0.353000													25	36					0	0	0.000720815	0	0
ABCB7	22	broad.mit.edu	37	X	74288843	74288843	+	Splice_Site	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chrX:74288843T>C	ENST00000253577.3	-	12	1685	c.1662_splice	c.e12+1	p.Q554_splice	ABCB7_ENST00000339447.4_Splice_Site_p.Q513_splice|ABCB7_ENST00000373394.3_Splice_Site_p.Q553_splice|ABCB7_ENST00000534570.1_5'UTR	NM_001271696.1|NM_004299.3	NP_001258625.1|NP_004290.2	O75027	ABCB7_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP), member 7	553	ABC transporter.				cellular iron ion homeostasis	integral to membrane|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|heme transporter activity			breast(1)|endometrium(5)|large_intestine(5)|lung(6)|ovary(2)|prostate(1)	20						TTTAAATACCTGAGGTACCAC	0.403000													3	73					0	0	0.00024832	0	0
VSIG2	23584	broad.mit.edu	37	11	124618415	124618415	+	Missense_Mutation	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr11:124618415C>G	ENST00000403470.1	-	6	777	c.722G>C	c.(721-723)cGa>cCa	p.R241P	VSIG2_ENST00000326621.5_Missense_Mutation_p.R241P			Q96IQ7	VSIG2_HUMAN	V-set and immunoglobulin domain containing 2	241						integral to plasma membrane|membrane fraction				central_nervous_system(1)|cervix(1)|kidney(2)|large_intestine(2)|lung(8)|ovary(5)	19	all_hematologic(175;0.215)	Breast(109;0.00663)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0215)		TCCGGCCACTCGGCCTTGGGA	0.607000													25	13					0	0	0.00278032	0	0
THAP6	152815	broad.mit.edu	37	4	76442145	76442145	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr4:76442145C>T	ENST00000311638.3	+	3	312	c.244C>T	c.(244-246)Cct>Tct	p.P82S	THAP6_ENST00000514480.1_Missense_Mutation_p.P82S|THAP6_ENST00000504190.1_Missense_Mutation_p.P41S|THAP6_ENST00000507885.1_Missense_Mutation_p.P41S|THAP6_ENST00000507557.1_Missense_Mutation_p.P41S|THAP6_ENST00000502620.1_Missense_Mutation_p.P41S|THAP6_ENST00000508105.1_Missense_Mutation_p.P41S|THAP6_ENST00000507556.1_Missense_Mutation_p.P82S|THAP6_ENST00000380837.3_Missense_Mutation_p.P82S	NM_144721.4	NP_653322.1	Q8TBB0	THAP6_HUMAN	THAP domain containing 6	82						microtubule cytoskeleton	DNA binding|metal ion binding			lung(5)	5			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			TAAACTGAAACCTGGAGTCAT	0.363000													5	33					0	0	0.00307968	0	0
LRRTM1	347730	broad.mit.edu	37	2	80529787	80529787	+	Silent	SNP	G	G	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:80529787G>T	ENST00000295057.3	-	2	1814	c.1158C>A	c.(1156-1158)ccC>ccA	p.P386P	CTNNA2_ENST00000496558.1_Intron|CTNNA2_ENST00000541047.1_Intron|CTNNA2_ENST00000540488.1_Intron|CTNNA2_ENST00000361291.4_Intron|LRRTM1_ENST00000409148.1_Silent_p.P386P|CTNNA2_ENST00000402739.4_Intron|CTNNA2_ENST00000466387.1_Intron	NM_178839.4	NP_849161.2	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	386						axon|endoplasmic reticulum membrane|growth cone|integral to membrane				NS(1)|breast(1)|endometrium(5)|large_intestine(7)|liver(1)|lung(33)|ovary(3)|pancreas(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(5)|urinary_tract(2)	63						AGCTGGCAGGGGGCCCCAGAT	0.726000										HNSCC(69;0.2)			9	20					9.70103e-10	3.31713e-09	0.000673444	1	0
CHDH	55349	broad.mit.edu	37	3	53854579	53854579	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:53854579G>A	ENST00000315251.5	-	6	1479	c.1042C>T	c.(1042-1044)Cgc>Tgc	p.R348C		NM_018397.4	NP_060867.2	Q8NE62	CHDH_HUMAN	choline dehydrogenase	348					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			NS(1)|breast(1)|central_nervous_system(2)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(3)|lung(4)|ovary(2)|prostate(1)	17		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	GTGATAGGGCGGGTGCATGCC	0.557000													18	72					0	0	0.00121646	0	0
TMLHE	55217	broad.mit.edu	37	X	154736595	154736595	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chrX:154736595T>C	ENST00000334398.3	-	6	1104	c.959A>G	c.(958-960)aAt>aGt	p.N320S	TMLHE-AS1_ENST00000452506.1_RNA|TMLHE_ENST00000369439.4_Missense_Mutation_p.N320S	NM_018196.3	NP_060666.1	Q9NVH6	TMLH_HUMAN	trimethyllysine hydroxylase, epsilon	320					carnitine biosynthetic process	mitochondrial matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|trimethyllysine dioxygenase activity			breast(1)|endometrium(5)|kidney(2)|large_intestine(4)|lung(6)|ovary(1)|upper_aerodigestive_tract(1)	20	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Succinic acid(DB00139)|Vitamin C(DB00126)	TGGGTAGATATTTAAGACTGG	0.373000													70	14					0	0	0.00361006	0	0
KCNS3	3790	broad.mit.edu	37	2	18112633	18112633	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:18112633C>T	ENST00000403915.1	+	3	809	c.358C>T	c.(358-360)Cgc>Tgc	p.R120C	KCNS3_ENST00000465292.1_Intron|KCNS3_ENST00000304101.4_Missense_Mutation_p.R120C			Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	120					energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity	p.R120C(1)		endometrium(5)|kidney(1)|large_intestine(7)|lung(11)|ovary(4)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	32	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CTGCAGCAATCGCTACCAGGA	0.507000													15	78					0	0	0.00316338	0	0
SGPL1	8879	broad.mit.edu	37	10	72610941	72610941	+	Missense_Mutation	SNP	A	A	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr10:72610941A>T	ENST00000373202.3	+	4	435	c.235A>T	c.(235-237)Agg>Tgg	p.R79W		NM_003901.3	NP_003892.2	O95470	SGPL1_HUMAN	sphingosine-1-phosphate lyase 1	79					apoptosis|carboxylic acid metabolic process|ceramide metabolic process|sphingolipid catabolic process	integral to endoplasmic reticulum membrane	carboxy-lyase activity|pyridoxal phosphate binding|sphinganine-1-phosphate aldolase activity			large_intestine(4)	4					Pyridoxal Phosphate(DB00114)	TAAGCTCACCAGGAAGATGCC	0.328000													28	45					0	0	0.00209593	0	0
HSPA1A	3303	broad.mit.edu	37	6	31785354	31785354	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr6:31785354C>T	ENST00000375651.5	+	1	2064	c.1821C>T	c.(1819-1821)atC>atT	p.I607I	HSPA1A_ENST00000458062.2_Silent_p.I516I	NM_005345.5	NP_005336.3	P08107	HSP71_HUMAN	heat shock 70kDa protein 1A	607					anti-apoptosis|mRNA catabolic process|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of inclusion body assembly|protein refolding|response to unfolded protein	cytosol|endoplasmic reticulum|inclusion body|mitochondrion|nuclear speck|perinuclear region of cytoplasm|ribonucleoprotein complex	ATP binding|protein binding involved in protein folding|protein N-terminus binding|receptor activity|ubiquitin protein ligase binding|unfolded protein binding			endometrium(1)|ovary(1)|stomach(1)	3						ACCCCATCATCAGCGGACTGT	0.632000													30	82					0	0	0.00111076	0	0
SMC3	9126	broad.mit.edu	37	10	112363045	112363045	+	Missense_Mutation	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr10:112363045T>A	ENST00000361804.4	+	28	3705	c.3579T>A	c.(3577-3579)aaT>aaA	p.N1193K		NM_005445.3	NP_005436.1	Q9UQE7	SMC3_HUMAN	structural maintenance of chromosomes 3	1193					cell division|DNA mediated transformation|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic spindle organization|negative regulation of DNA endoreduplication|signal transduction|sister chromatid cohesion	basement membrane|chromatin|chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nuclear matrix|nucleoplasm|spindle pole	ATP binding|dynein binding|microtubule motor activity|protein heterodimerization activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(3)|kidney(7)|large_intestine(5)|lung(13)|ovary(1)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	39		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.00206)|all cancers(201;0.0227)|BRCA - Breast invasive adenocarcinoma(275;0.127)		AGTTCAGAAATAAGGTAATTT	0.279000													10	18					0	0	0.000673444	0	0
ZNF345	25850	broad.mit.edu	37	19	37368948	37368948	+	Missense_Mutation	SNP	T	T	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:37368948T>G	ENST00000529555.1	+	2	2004	c.1216T>G	c.(1216-1218)Tcc>Gcc	p.S406A	ZNF345_ENST00000526123.1_Intron|ZNF345_ENST00000432005.2_Intron|ZNF345_ENST00000589046.1_Missense_Mutation_p.S406A|ZNF345_ENST00000420450.1_Missense_Mutation_p.S406A			Q14585	ZN345_HUMAN	zinc finger protein 345	406					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(13)|lung(5)|ovary(2)|prostate(1)	24	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ATGTGGAAAGTCCTTTAGTAG	0.433000													8	42					0	0	0.00185496	0	0
NXPH3	11248	broad.mit.edu	37	17	47656378	47656378	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr17:47656378C>T	ENST00000328741.5	+	2	837	c.475C>T	c.(475-477)Cag>Tag	p.Q159*	NXPH3_ENST00000513748.1_Nonsense_Mutation_p.Q159*	NM_007225.2	NP_009156.2	O95157	NXPH3_HUMAN	neurexophilin 3	159	IV (linker domain).				neuropeptide signaling pathway	extracellular region				endometrium(2)|large_intestine(3)|lung(4)|pancreas(1)|skin(2)	12	all_cancers(4;7.45e-14)|Breast(4;1.08e-27)|all_epithelial(4;2.27e-17)					AGAGTTCCACCAGGAACAGCA	0.567000													5	77					0	0	0.00116845	0	0
PLSCR1	5359	broad.mit.edu	37	3	146251261	146251261	+	Missense_Mutation	SNP	G	G	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:146251261G>C	ENST00000342435.4	-	3	500	c.90C>G	c.(88-90)ttC>ttG	p.F30L	PLSCR1_ENST00000448787.2_Missense_Mutation_p.S22C|PLSCR1_ENST00000487389.1_Missense_Mutation_p.F23L|PLSCR1_ENST00000448205.1_5'UTR	NM_021105.2	NP_066928.1	O15162	PLS1_HUMAN	phospholipid scramblase 1	30					phospholipid scrambling|platelet activation|response to virus	integral to membrane|plasma membrane	calcium ion binding|phospholipid scramblase activity|SH3 domain binding			breast(1)|endometrium(1)|kidney(2)|large_intestine(2)|lung(5)|ovary(2)|prostate(1)|skin(1)	15						CTTTACCTTGGAATGCTGTCG	0.428000													24	92					0	0	0.00395357	0	0
SH3RF3	344558	broad.mit.edu	37	2	110015122	110015122	+	Missense_Mutation	SNP	T	T	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:110015122T>G	ENST00000309415.6	+	4	1022	c.1022T>G	c.(1021-1023)cTg>cGg	p.L341R		NM_001099289.1	NP_001092759.1	Q8TEJ3	SH3R3_HUMAN	SH3 domain containing ring finger 3	341							zinc ion binding			endometrium(2)|kidney(1)|large_intestine(6)|liver(2)|lung(5)|ovary(2)	18						AATGCCTCCCTGCCCTCTGAC	0.617000													3	7					0	0	6.4e-05	0	0
PCDHA10	56139	broad.mit.edu	37	5	140237238	140237238	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr5:140237238C>T	ENST00000307360.5	+	1	1605	c.1605C>T	c.(1603-1605)agC>agT	p.S535S	PCDHA8_ENST00000531613.1_Intron|PCDHA4_ENST00000530339.1_Intron|PCDHA3_ENST00000522353.2_Intron|PCDHA4_ENST00000512229.2_Intron|PCDHA5_ENST00000529619.1_Intron|PCDHA6_ENST00000529310.1_Intron|PCDHA7_ENST00000525929.1_Intron|PCDHA5_ENST00000529859.1_Intron|PCDHA2_ENST00000526136.1_Intron|PCDHA1_ENST00000394633.3_Intron|PCDHA6_ENST00000527624.1_Intron|PCDHA1_ENST00000504120.2_Intron|PCDHA9_ENST00000532602.1_Intron|PCDHA10_ENST00000506939.2_Intron	NM_018901.2|NM_031859.1	NP_061724.1|NP_114065.1														NS(1)|breast(11)|cervix(1)|endometrium(11)|kidney(5)|large_intestine(13)|liver(2)|lung(20)|ovary(3)|pancreas(1)|prostate(3)|skin(6)|upper_aerodigestive_tract(2)	79			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCAGGTGAGCGCGCGCGATG	0.682000													54	39					0	0	0.00361006	0	0
XPOT	11260	broad.mit.edu	37	12	64828639	64828639	+	Missense_Mutation	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:64828639C>G	ENST00000332707.5	+	21	3164	c.2635C>G	c.(2635-2637)Cta>Gta	p.L879V		NM_007235.4	NP_009166.2	O43592	XPOT_HUMAN	exportin, tRNA	879	Necessary for tRNA-binding, cytoplasmic localization and nuclear export.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			NS(1)|breast(2)|central_nervous_system(3)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(7)|lung(12)|ovary(4)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	45				GBM - Glioblastoma multiforme(28;0.0404)		CGCATGTTTCCTAGCACCTTT	0.378000													36	59					0	0	0.00148497	0	0
KIAA1715	80856	broad.mit.edu	37	2	176794780	176794780	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:176794780G>A	ENST00000272748.4	-	13	1449	c.1202C>T	c.(1201-1203)tCa>tTa	p.S401L	KIAA1715_ENST00000535310.1_3'UTR|KIAA1715_ENST00000544803.1_Missense_Mutation_p.S432L	NM_030650.1	NP_085153.1	Q9C0E8	LNP_HUMAN	KIAA1715	401						integral to membrane	protein binding			endometrium(1)|large_intestine(4)|lung(12)|ovary(2)|skin(1)	20			OV - Ovarian serous cystadenocarcinoma(117;0.0793)			TTCAATCACTGAGGCTTCCTC	0.438000													35	59					0	0	0.00327116	0	0
SMURF1	57154	broad.mit.edu	37	7	98638089	98638089	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr7:98638089A>G	ENST00000361125.1	-	14	1859	c.1540T>C	c.(1540-1542)Ttc>Ctc	p.F514L	AC004893.11_ENST00000468960.2_RNA|SMURF1_ENST00000361368.2_Missense_Mutation_p.F488L	NM_020429.2	NP_065162.1	Q9HCE7	SMUF1_HUMAN	SMAD specific E3 ubiquitin protein ligase 1	514	HECT.				BMP signaling pathway|cell differentiation|ectoderm development|negative regulation of BMP signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process|protein export from nucleus|protein localization at cell surface|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|plasma membrane	activin binding|I-SMAD binding|R-SMAD binding|ubiquitin-protein ligase activity			endometrium(3)|kidney(2)|large_intestine(5)|lung(11)|ovary(1)|skin(2)|urinary_tract(1)	25	all_cancers(62;1.05e-08)|all_epithelial(64;4.34e-09)|Lung NSC(181;0.00902)|all_lung(186;0.0145)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)|Lung(104;0.224)			TGCTTGTAGAAGGGCACTGTG	0.542000											OREG0018189	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	66	55					0	0	0.00361006	0	0
TRBC2	28638	broad.mit.edu	37	7	142499762	142499762	+	RNA	SNP	A	A	G	rs706	by1000genomes	TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr7:142499762A>G	ENST00000466254.1	+	0	405																											GTGCACAGGTACCTACATGCT	0.542000													3	73					0	0	6.4e-05	0	0
DNAH10	196385	broad.mit.edu	37	12	124270320	124270320	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:124270320G>A	ENST00000409039.3	+	9	1100	c.1075G>A	c.(1075-1077)Gtg>Atg	p.V359M		NM_207437.3	NP_997320.2	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	359	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			breast(1)|central_nervous_system(1)|cervix(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(12)|lung(14)|ovary(4)|prostate(2)|skin(4)|upper_aerodigestive_tract(3)|urinary_tract(1)	52	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGGCTTCCACGTGGTCCTGGA	0.537000													23	46					0	0	0.00278032	0	0
PLXNB2	23654	broad.mit.edu	37	22	50716358	50716358	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr22:50716358A>G	ENST00000449103.1	-	32	5112	c.4972T>C	c.(4972-4974)Ttc>Ctc	p.F1658L	PLXNB2_ENST00000359337.4_Missense_Mutation_p.F1658L			O15031	PLXB2_HUMAN	plexin B2	1658					regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			breast(2)|central_nervous_system(4)|cervix(2)|endometrium(11)|kidney(4)|large_intestine(3)|liver(1)|lung(20)|ovary(5)|prostate(6)|skin(3)|upper_aerodigestive_tract(3)|urinary_tract(2)	66		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		AGGAAGTCGAAGAAGTACTTG	0.602000													29	45					0	0	0.00106085	0	0
ZNF233	353355	broad.mit.edu	37	19	44777755	44777755	+	Silent	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:44777755T>C	ENST00000391958.2	+	5	1069	c.942T>C	c.(940-942)taT>taC	p.Y314Y	ZNF233_ENST00000334152.1_Silent_p.Y296Y|ZNF233_ENST00000592581.1_3'UTR|ZNF235_ENST00000589799.1_Intron	NM_181756.2	NP_861421.2	A6NK53	ZN233_HUMAN	zinc finger protein 233	314					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(6)|lung(4)|skin(3)|urinary_tract(1)	20		Prostate(69;0.0435)|all_neural(266;0.226)				AGAAATGCTATAGGAATGGTG	0.488000													22	29					0	0	0.00229938	0	0
EPS15L1	58513	broad.mit.edu	37	19	16514739	16514739	+	Missense_Mutation	SNP	G	G	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:16514739G>C	ENST00000602009.1	-	9	1864	c.969C>G	c.(967-969)atC>atG	p.I323M	EPS15L1_ENST00000535753.2_Missense_Mutation_p.I477M|EPS15L1_ENST00000594975.1_Missense_Mutation_p.I477M|EPS15L1_ENST00000597937.1_Missense_Mutation_p.I477M|EPS15L1_ENST00000455140.2_Missense_Mutation_p.I477M|EPS15L1_ENST00000248070.6_Missense_Mutation_p.I477M			Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway substrate 15-like 1	477	EH 3.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			breast(2)|central_nervous_system(1)|cervix(1)|endometrium(2)|kidney(3)|large_intestine(3)|lung(12)|ovary(4)|skin(2)	30						TCAGTGATGAGATCTGAAATG	0.458000													13	21					0	0	0.00136819	0	0
USP48	84196	broad.mit.edu	37	1	22030033	22030033	+	Missense_Mutation	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:22030033T>A	ENST00000308271.9	-	21	3242	c.2594A>T	c.(2593-2595)tAt>tTt	p.Y865F	USP48_ENST00000374732.3_Missense_Mutation_p.Y403F|USP48_ENST00000400301.1_Missense_Mutation_p.Y865F|USP48_ENST00000529637.1_Missense_Mutation_p.Y877F	NM_032236.5	NP_115612.4	Q86UV5	UBP48_HUMAN	ubiquitin specific peptidase 48	865					ubiquitin-dependent protein catabolic process	mitochondrion|nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			NS(1)|endometrium(6)|kidney(2)|large_intestine(11)|lung(14)|ovary(2)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	42		Colorectal(325;3.46e-05)|all_lung(284;4.29e-05)|Lung NSC(340;4.66e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|OV - Ovarian serous cystadenocarcinoma(117;4.74e-26)|COAD - Colon adenocarcinoma(152;1.3e-05)|GBM - Glioblastoma multiforme(114;1.86e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000614)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00711)|Lung(427;0.0327)|READ - Rectum adenocarcinoma(331;0.0657)|LUSC - Lung squamous cell carcinoma(448;0.0753)		TTTATGGACATAGATGGTGGC	0.428000													65	126					0	0	0.00361006	0	0
LYST	1130	broad.mit.edu	37	1	235860530	235860530	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:235860530C>T	ENST00000389794.3	-	46	10591	c.10417G>A	c.(10417-10419)Gtg>Atg	p.V3473M	LYST_ENST00000389793.2_Missense_Mutation_p.V3473M|LYST_ENST00000473037.1_5'UTR			Q99698	LYST_HUMAN	lysosomal trafficking regulator	3473					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			NS(1)|breast(13)|central_nervous_system(3)|cervix(3)|endometrium(17)|haematopoietic_and_lymphoid_tissue(1)|kidney(8)|large_intestine(27)|lung(66)|ovary(7)|pancreas(1)|prostate(4)|skin(4)|stomach(1)|upper_aerodigestive_tract(5)|urinary_tract(1)	162	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			GGGGAACCCACGTATTCCCCC	0.468000													50	13					0	0	0.00361006	0	0
KRTAP26-1	388818	broad.mit.edu	37	21	31692054	31692054	+	Silent	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr21:31692054A>G	ENST00000360542.3	-	1	553	c.300T>C	c.(298-300)gcT>gcC	p.A100A		NM_203405.1	NP_981950.1	Q6PEX3	KR261_HUMAN	keratin associated protein 26-1	100						intermediate filament				endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(7)|ovary(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	16						AGAAGAAAGAAGCAGGAAGAA	0.542000													25	74					0	0	0.00332997	0	0
STT3A	3703	broad.mit.edu	37	11	125479465	125479465	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr11:125479465C>T	ENST00000392708.4	+	10	1257	c.1098C>T	c.(1096-1098)ctC>ctT	p.L366L	STT3A_ENST00000529196.1_Silent_p.L366L|STT3A_ENST00000531491.1_Silent_p.L274L	NM_001278503.1|NM_001278504.1|NM_152713.3	NP_001265432.1|NP_001265433.1|NP_689926.1	P46977	STT3A_HUMAN	STT3A, subunit of the oligosaccharyltransferase complex (catalytic)	366					post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity			NS(1)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(3)|lung(15)|skin(1)	33	all_hematologic(175;0.228)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0996)		ACCTGCAGCTCCTCGTCTTCA	0.453000													37	31					0	0	0.00111076	0	0
AJUBA	84962	broad.mit.edu	37	14	23447583	23447583	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr14:23447583G>A	ENST00000262713.2	-	2	1453	c.1078C>T	c.(1078-1080)Cac>Tac	p.H360Y	AJUBA_ENST00000361265.4_Missense_Mutation_p.H360Y|RP11-298I3.5_ENST00000555074.1_Intron	NM_032876.4	NP_116265.1	Q96IF1	JUB_HUMAN	ajuba LIM protein	360	LIM zinc-binding 1.				cell cycle|gene silencing by miRNA|positive regulation of protein complex assembly	cell-cell junction|cytoplasmic mRNA processing body|microtubule organizing center	alpha-catenin binding|zinc ion binding										CACTGGGTGTGGTAGAGGCTG	0.527000													77	24					0	0	0.00361006	0	0
TRHR	7201	broad.mit.edu	37	8	110100298	110100298	+	Missense_Mutation	SNP	A	A	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr8:110100298A>T	ENST00000518632.1	+	2	908	c.557A>T	c.(556-558)aAt>aTt	p.N186I	TRHR_ENST00000311762.2_Missense_Mutation_p.N186I			P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	186						integral to plasma membrane	thyrotropin-releasing hormone receptor activity			endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(8)|lung(12)|prostate(4)|skin(4)|urinary_tract(1)	37			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			ATCTCCAGGAATTACTACTCA	0.403000													14	51					0	0	0.00244969	0	0
TP53	7157	broad.mit.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr17:7578212G>A	ENST00000420246.2	-	6	769	c.637C>T	c.(637-639)Cga>Tga	p.R213*	TP53_ENST00000359597.4_Nonsense_Mutation_p.R213*|TP53_ENST00000269305.4_Nonsense_Mutation_p.R213*|TP53_ENST00000445888.2_Nonsense_Mutation_p.R213*|TP53_ENST00000413465.2_Nonsense_Mutation_p.R213*|TP53_ENST00000574684.1_Intron|TP53_ENST00000455263.2_Nonsense_Mutation_p.R213*	NM_001126114.2|NM_001276696.1	NP_001119586.1|NP_001263625.1	P04637	P53_HUMAN	tumor protein p53	213	Interaction with AXIN1 (By similarity).|Interaction with HIPK1 (By similarity).|Required for interaction with FBXO42.		R -> G (in sporadic cancers; somatic mutation).|R -> L (in sporadic cancers; somatic mutation).|R -> P (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> Q (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> W (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R213*(250)|p.R81*(21)|p.R120*(21)|p.0?(8)|p.?(5)|p.R213G(5)|p.R213fs*35(3)|p.R213fs*34(3)|p.D208_V216delDRNTFRHSV(1)|p.R120G(1)|p.D207_R213delDDRNTFR(1)|p.T211_S215delTFRHS(1)|p.R81fs*>11(1)|p.D208fs*1(1)|p.R120fs*35(1)|p.R81G(1)|p.R209_R213delRNTFR(1)|p.R213fs*2(1)|p.T211fs*28(1)|p.R213_S215>X(1)|p.D207_V216del10(1)|p.R213R(1)|p.R213fs*32(1)|p.R209fs*6(1)|p.R213W(1)		NS(16)|adrenal_gland(37)|autonomic_ganglia(16)|biliary_tract(273)|bone(108)|breast(2530)|central_nervous_system(1264)|cervix(68)|endometrium(223)|eye(24)|fallopian_tube(1)|gastrointestinal_tract_(site_indeterminate)(1)|genital_tract(16)|haematopoietic_and_lymphoid_tissue(1301)|kidney(96)|large_intestine(5124)|liver(897)|lung(2388)|meninges(5)|oesophagus(1473)|ovary(1659)|pancreas(452)|penis(10)|peritoneum(33)|pituitary(4)|placenta(1)|pleura(3)|prostate(235)|salivary_gland(43)|skin(791)|small_intestine(14)|soft_tissue(220)|stomach(1158)|testis(11)|thymus(21)|thyroid(54)|upper_aerodigestive_tract(2271)|urinary_tract(1259)|vagina(6)|vulva(79)	24185		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		ACACTATGTCGAAAAGTGTTT	0.532000		111	"""Mis, N, F"""		"""breast, colorectal, lung, sarcoma, adrenocortical, glioma, multiple other tumour types"""	"""breast, sarcoma, adrenocortical carcinoma, glioma, multiple other tumour types"""		Other conserved DNA damage response genes	Osteosarcoma, Familial Clustering of;Li-Fraumeni syndrome;Hereditary Breast-Ovarian Cancer, non-BRCA1/2;Hereditary Adrenocortical Cancer;Endometrial Cancer, Familial Clustering of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			25	13					0	0	0.000720815	0	0
DISP1	84976	broad.mit.edu	37	1	223179194	223179194	+	Silent	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:223179194A>G	ENST00000284476.6	+	8	4619	c.4455A>G	c.(4453-4455)agA>agG	p.R1485R		NM_032890.3	NP_116279.2	Q96F81	DISP1_HUMAN	dispatched homolog 1 (Drosophila)	1485					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(7)|kidney(3)|large_intestine(20)|lung(25)|prostate(4)|skin(1)|stomach(1)|urinary_tract(5)	69				GBM - Glioblastoma multiforme(131;0.102)		GTTGTGGCAGAATTGTGAGAG	0.408000													12	61					0	0	0.00185496	0	0
COL11A1	1301	broad.mit.edu	37	1	103345461	103345461	+	Missense_Mutation	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:103345461T>A	ENST00000358392.2	-	66	5405	c.5088A>T	c.(5086-5088)ttA>ttT	p.L1696F	COL11A1_ENST00000370096.3_Missense_Mutation_p.L1684F|COL11A1_ENST00000353414.4_Missense_Mutation_p.L1645F|COL11A1_ENST00000512756.1_Missense_Mutation_p.L1568F	NM_080629.2	NP_542196.2	P12107	COBA1_HUMAN	collagen, type XI, alpha 1	1684	Fibrillar collagen NC1.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			NS(3)|biliary_tract(1)|breast(5)|central_nervous_system(2)|cervix(1)|endometrium(17)|kidney(8)|large_intestine(28)|lung(157)|ovary(6)|pancreas(2)|prostate(6)|skin(9)|stomach(1)|upper_aerodigestive_tract(11)|urinary_tract(1)	258		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CTTCAACATCTAAGTATGAAA	0.378000													11	23					0	0	0.000673444	0	0
SLC4A2	6522	broad.mit.edu	37	7	150771897	150771897	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr7:150771897A>G	ENST00000485713.1	+	19	4056	c.3016A>G	c.(3016-3018)Att>Gtt	p.I1006V	SLC4A2_ENST00000392826.2_Missense_Mutation_p.I997V|SLC4A2_ENST00000461735.1_Missense_Mutation_p.I992V|SLC4A2_ENST00000413384.2_Missense_Mutation_p.I1006V|SLC4A2_ENST00000310317.5_Missense_Mutation_p.I924V|RP11-148K1.12_ENST00000485974.1_RNA	NM_001199692.1	NP_001186621.1	P04920	B3A2_HUMAN	solute carrier family 4 (anion exchanger), member 2	1006	Membrane (anion exchange).				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity			NS(1)|central_nervous_system(2)|endometrium(3)|kidney(1)|large_intestine(2)|liver(2)|lung(14)|prostate(3)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	33			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTGGTCTTCATTCTCATCTT	0.597000													10	15					0	0	0.000673444	0	0
GRIP1	23426	broad.mit.edu	37	12	66932903	66932903	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:66932903C>A	ENST00000359742.4	-	4	613	c.373G>T	c.(373-375)Gga>Tga	p.G125*	GRIP1_ENST00000398016.3_Nonsense_Mutation_p.G125*|GRIP1_ENST00000286445.7_Nonsense_Mutation_p.G125*			Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	125	PDZ 1.				androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			NS(3)|breast(2)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(10)|lung(19)|ovary(2)|prostate(2)|skin(1)	50			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		ACTCTTTCTCCCACATTCTTC	0.498000													41	89					6.48837e-15	2.33141e-14	0.0025221	1	0
PRKG1	5592	broad.mit.edu	37	10	54040637	54040637	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr10:54040637A>G	ENST00000373980.4	+	13	1909	c.1492A>G	c.(1492-1494)Agg>Ggg	p.R498G	PRKG1-AS1_ENST00000452247.2_RNA|PRKG1_ENST00000373975.2_Missense_Mutation_p.R201G|PRKG1_ENST00000401604.2_Missense_Mutation_p.R483G|PRKG1-AS1_ENST00000426785.2_RNA|PRKG1_ENST00000373985.1_Missense_Mutation_p.R471G	NM_006258.3	NP_006249.1	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I	483	Protein kinase.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			autonomic_ganglia(1)|breast(1)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(11)|lung(23)|ovary(1)|prostate(1)|skin(5)|stomach(1)|upper_aerodigestive_tract(2)	53		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		AATCATTTACAGGGACCTCAA	0.423000													3	82					0	0	6.4e-05	0	0
KMT2C	58508	broad.mit.edu	37	7	151945031	151945031	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr7:151945031T>C	ENST00000355193.2	-	14	2706	c.2488A>G	c.(2488-2490)Att>Gtt	p.I830V	KMT2C_ENST00000262189.6_Missense_Mutation_p.I830V					lysine (K)-specific methyltransferase 2C																		CTCTTAGTAATAGCTGGTTTA	0.383000													8	167					0	0	0.000673444	0	0
CCNE2	9134	broad.mit.edu	37	8	95897779	95897779	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr8:95897779T>C	ENST00000520509.1	-	8	860	c.608A>G	c.(607-609)tAt>tGt	p.Y203C	CCNE2_ENST00000523476.1_5'UTR|CCNE2_ENST00000308108.4_Missense_Mutation_p.Y203C|CCNE2_ENST00000396133.3_Missense_Mutation_p.Y203C			O96020	CCNE2_HUMAN	cyclin E2	203					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding			cervix(1)|endometrium(2)|large_intestine(3)|lung(4)|prostate(1)	11	Breast(36;8.75e-07)					TTTAGGAGCATAGATTTCCTT	0.318000													26	31					0	0	0.000878237	0	0
RSF1	51773	broad.mit.edu	37	11	77411780	77411780	+	Missense_Mutation	SNP	A	A	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr11:77411780A>C	ENST00000308488.6	-	6	2796	c.2494T>G	c.(2494-2496)Tct>Gct	p.S832A	RSF1_ENST00000360355.2_Missense_Mutation_p.S801A|RSF1_ENST00000480887.1_Missense_Mutation_p.S580A			Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	832					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			breast(3)|central_nervous_system(2)|endometrium(3)|kidney(4)|large_intestine(9)|lung(14)|ovary(2)|prostate(2)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	43	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			CTTACTTTAGAATTTGTATCT	0.284000													24	16					0	0	0.00229938	0	0
SLC2A6	11182	broad.mit.edu	37	9	136338607	136338607	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr9:136338607C>T	ENST00000371899.4	-	8	1229	c.1152G>A	c.(1150-1152)gcG>gcA	p.A384A	SLC2A6_ENST00000485978.1_5'UTR|SLC2A6_ENST00000371897.4_Intron	NM_017585.3	NP_060055.2	Q9UGQ3	GTR6_HUMAN	solute carrier family 2 (facilitated glucose transporter), member 6	384						integral to membrane|plasma membrane	D-glucose transmembrane transporter activity			cervix(1)|endometrium(1)|large_intestine(1)|lung(3)|prostate(3)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(145;8.47e-08)|Epithelial(140;9.37e-07)|all cancers(34;1.03e-05)		CCAGGGGCTGCGCCAAGTCCC	0.662000													8	20					0	0	0.00307968	0	0
ABCC12	94160	broad.mit.edu	37	16	48174830	48174830	+	Splice_Site	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr16:48174830G>A	ENST00000416054.1	-	4	430	c.423_splice	c.e4-1	p.T142_splice	ABCC12_ENST00000448542.1_Splice_Site_p.T142_splice|ABCC12_ENST00000311303.3_Intron			Q96J65	MRP9_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	142	ABC transmembrane type-1 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			NS(1)|breast(5)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(15)|liver(1)|lung(43)|ovary(2)|prostate(3)|skin(7)|urinary_tract(1)	90		all_cancers(37;0.0474)|all_lung(18;0.047)				AATGAGAACTGTCTGTAAAAC	0.527000													9	29					0	0	0.000274275	0	0
GRAMD1C	54762	broad.mit.edu	37	3	113664258	113664258	+	Missense_Mutation	SNP	T	T	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:113664258T>G	ENST00000358160.4	+	18	2414	c.1922T>G	c.(1921-1923)cTc>cGc	p.L641R	GRAMD1C_ENST00000479212.1_3'UTR|GRAMD1C_ENST00000472026.1_Missense_Mutation_p.L474R|GRAMD1C_ENST00000452134.2_Missense_Mutation_p.L370R|GRAMD1C_ENST00000440446.2_Missense_Mutation_p.L436R	NM_017577.4	NP_060047.3	Q8IYS0	GRM1C_HUMAN	GRAM domain containing 1C	641						integral to membrane				NS(1)|endometrium(1)|large_intestine(6)|lung(13)|ovary(2)|skin(3)	26						AAGAGCTCACTCATTATGCTT	0.323000													24	50					0	0	0.000720815	0	0
COLEC11	78989	broad.mit.edu	37	2	3691423	3691423	+	Silent	SNP	G	G	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:3691423G>T	ENST00000403096.3	+	6	944	c.453G>T	c.(451-453)ctG>ctT	p.L151L	COLEC11_ENST00000418971.2_Silent_p.L191L|COLEC11_ENST00000402794.1_Silent_p.L127L|COLEC11_ENST00000402922.1_Silent_p.L127L|COLEC11_ENST00000382062.2_Silent_p.L153L|COLEC11_ENST00000349077.4_Silent_p.L177L|COLEC11_ENST00000236693.7_Silent_p.L174L|COLEC11_ENST00000487365.1_3'UTR|COLEC11_ENST00000404205.1_Silent_p.L103L	NM_001255986.1	NP_001242915.1	Q9BWP8	COL11_HUMAN	collectin sub-family member 11	177	C-type lectin.					collagen	mannose binding			central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(4)|lung(10)|ovary(1)|skin(1)|soft_tissue(1)	22	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.127)		GGGGCACGCTGAGCATGCCCA	0.667000													19	26					1.01871e-10	3.54044e-10	0.00121646	1	0
EIF2AK4	440275	broad.mit.edu	37	15	40295429	40295429	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr15:40295429C>T	ENST00000263791.5	+	23	3314	c.3271C>T	c.(3271-3273)Cga>Tga	p.R1091*	EIF2AK4_ENST00000559311.1_3'UTR|EIF2AK4_ENST00000382727.2_Nonsense_Mutation_p.R1063*	NM_001013703.2	NP_001013725.2	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha kinase 4	1091	Histidyl-tRNA synthetase-like.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			NS(1)|breast(2)|endometrium(1)|kidney(3)|large_intestine(8)|lung(18)|ovary(1)|prostate(3)|skin(2)|stomach(1)	40		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		ACTGCTTCCCCGAAACAGACA	0.473000													19	41					0	0	0.000958276	0	0
AC005609.1	0	broad.mit.edu	37	5	140242781	140242781	+	Silent	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr5:140242781G>A	ENST00000502505.1	-	1	443	c.195C>T	c.(193-195)agC>agT	p.S65S	PCDHA8_ENST00000531613.1_Intron|PCDHA4_ENST00000530339.1_Intron|PCDHA3_ENST00000522353.2_Intron|PCDHA4_ENST00000512229.2_Intron|PCDHA5_ENST00000529619.1_Intron|PCDHA6_ENST00000529310.1_Intron|PCDHA7_ENST00000525929.1_Intron|PCDHA5_ENST00000529859.1_Intron|PCDHA2_ENST00000526136.1_Intron|PCDHA10_ENST00000307360.5_Intron|PCDHA1_ENST00000394633.3_Intron|PCDHA6_ENST00000527624.1_Intron|PCDHA1_ENST00000504120.2_Intron|PCDHA14_ENST00000562220.1_RNA|PCDHA9_ENST00000532602.1_Intron|PCDHA10_ENST00000506939.2_Intron																							TGGTGGCGTCGCTGGCGGAGA	0.672000													12	6					0	0	0.000978159	0	0
NAPB	63908	broad.mit.edu	37	20	23401954	23401954	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr20:23401954C>T	ENST00000377026.4	-	1	171	c.86G>A	c.(85-87)cGa>cAa	p.R29Q	NAPB_ENST00000472855.1_5'UTR|NAPB_ENST00000398425.3_5'UTR|NAPB_ENST00000432543.2_Missense_Mutation_p.R29Q	NM_022080.2	NP_071363.1	Q9H115	SNAB_HUMAN	N-ethylmaleimide-sensitive factor attachment protein, beta	29					intracellular protein transport|vesicle-mediated transport	membrane				endometrium(1)|kidney(2)|large_intestine(2)|lung(5)|ovary(1)|skin(1)	12	Lung NSC(19;0.0646)|Colorectal(13;0.0993)|all_lung(19;0.143)					AAACAGCCCTCGGAGGAAGGA	0.697000													4	7					0	0	0.00024832	0	0
C5orf34	375444	broad.mit.edu	37	5	43506112	43506112	+	Missense_Mutation	SNP	G	G	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr5:43506112G>C	ENST00000306862.2	-	4	1045	c.670C>G	c.(670-672)Ctg>Gtg	p.L224V	RP11-159F24.3_ENST00000505645.1_RNA	NM_198566.2	NP_940968.1	Q96MH7	CE034_HUMAN	chromosome 5 open reading frame 34	224										breast(2)|endometrium(2)|large_intestine(2)|lung(11)|ovary(1)|prostate(1)|stomach(2)	21	Lung NSC(6;2.07e-05)					GGCGAAGGCAGCTCTTCCCTC	0.423000													50	88					0	0	0.00361006	0	0
DCAF6	55827	broad.mit.edu	37	1	167973999	167973999	+	Missense_Mutation	SNP	A	A	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:167973999A>T	ENST00000367840.3	+	10	1440	c.1346A>T	c.(1345-1347)gAg>gTg	p.E449V	DCAF6_ENST00000432587.2_Missense_Mutation_p.E418V|DCAF6_ENST00000367843.3_Missense_Mutation_p.E449V|DCAF6_ENST00000312263.6_Missense_Mutation_p.E449V	NM_001198956.1	NP_001185885.1	Q58WW2	DCAF6_HUMAN	DDB1 and CUL4 associated factor 6	449					positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(6)|kidney(3)|large_intestine(8)|lung(10)|ovary(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	36						CAGTCTGTTGAGGCATCTGGA	0.423000													36	14					0	0	0.00111076	0	0
ZNF366	167465	broad.mit.edu	37	5	71756463	71756463	+	Silent	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr5:71756463C>G	ENST00000318442.5	-	2	1351	c.861G>C	c.(859-861)ggG>ggC	p.G287G		NM_152625.1	NP_689838.1	Q8N895	ZN366_HUMAN	zinc finger protein 366	287					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|central_nervous_system(1)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(7)|lung(9)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)	35		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		TGAAGAGCTTCCCGCAGTGCG	0.627000													23	50					0	0	0.00332997	0	0
ZNF345	25850	broad.mit.edu	37	19	37368870	37368870	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:37368870G>A	ENST00000529555.1	+	2	1926	c.1138G>A	c.(1138-1140)Ggt>Agt	p.G380S	ZNF345_ENST00000526123.1_Intron|ZNF345_ENST00000432005.2_Intron|ZNF345_ENST00000589046.1_Missense_Mutation_p.G380S|ZNF345_ENST00000420450.1_Missense_Mutation_p.G380S			Q14585	ZN345_HUMAN	zinc finger protein 345	380					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(13)|lung(5)|ovary(2)|prostate(1)	24	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GAAGGCCTTTGGTAGTGGCTC	0.418000													14	50					0	0	0.00185496	0	0
CPT2	1376	broad.mit.edu	37	1	53676319	53676319	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:53676319delC	ENST00000371486.3	+	4	1488	c.973delC	c.(973-975)tcfs	p.L325fs	RP5-1024G6.2_ENST00000452466.1_RNA	NM_000098.2	NP_000089.1	P23786	CPT2_HUMAN	carnitine palmitoyltransferase 2	325					carnitine shuttle|fatty acid beta-oxidation|regulation of fatty acid oxidation	mitochondrial inner membrane	carnitine O-palmitoyltransferase activity			breast(1)|central_nervous_system(1)|endometrium(2)|large_intestine(2)|lung(7)|skin(1)|upper_aerodigestive_tract(1)	15					L-Carnitine(DB00583)|Perhexiline(DB01074)	AGTGTTCTGTCTCTGCCTAGA	0.512													28	50	---	---	---	---					
SRGAP2B	647135	broad.mit.edu	37	1	144043905	144043906	+	RNA	INS	-	-	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:144043905_144043906insG	ENST00000467933.1	+	0	1108																											tcgctcacgctggagctgtaga	0.535													10	10	---	---	---	---					
SURF2	6835	broad.mit.edu	37	9	136227265	136227266	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr9:136227265_136227266delGA	ENST00000371964.4	+	5	683_684	c.642_643delGA	c.(640-645)aggafs	p.RR214fs		NM_017503.3	NP_059973.3	Q15527	SURF2_HUMAN	surfeit 2	214							protein binding			breast(1)|large_intestine(1)|lung(4)	6				OV - Ovarian serous cystadenocarcinoma(145;4.87e-07)|Epithelial(140;4.02e-06)|all cancers(34;3.71e-05)		ATGAGAGCAGGAGAGAGACGAC	0.554													9	29	---	---	---	---					
HMX3	340784	broad.mit.edu	37	10	124895904	124895904	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr10:124895904delC	ENST00000357878.5	+	1	427	c.338delC	c.(337-339)tcfs	p.S113fs		NM_001105574.1	NP_001099044.1	A6NHT5	HMX3_HUMAN	H6 family homeobox 3	113					cell differentiation	nucleus	sequence-specific DNA binding transcription factor activity			lung(4)	4		all_neural(114;0.0765)|Colorectal(57;0.102)|all_lung(145;0.11)|Lung NSC(174;0.163)		Colorectal(40;0.122)|COAD - Colon adenocarcinoma(40;0.141)		CTGGAGCGCTCCCCAGCCTGG	0.687													2	4	---	---	---	---					
RP11-1060J15.4	0	broad.mit.edu	37	12	27855780	27855781	+	RNA	INS	-	-	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:27855780_27855781insA	ENST00000536317.1	-	0	519				RP11-1060J15.4_ENST00000542660.1_RNA|RP11-1060J15.4_ENST00000536922.1_RNA																							TGCCAAGGCTGAaaaaaaaaga	0.396													2	4	---	---	---	---					
LOC100507250	100507250	broad.mit.edu	37	12	69078745	69078745	+	RNA	DEL	A	A	-			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:69078745delA	ENST00000500695.2	-	0	282					NR_038930.1																						aataaaaCACATGAAGGAATT	0.463													2	4	---	---	---	---					
ZNF737	100129842	broad.mit.edu	37	19	20728437	20728437	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:20728437delT	ENST00000427401.4	-	4	666	c.572delA	c.(571-573)ctfs	p.H191fs		NM_001159293.1	NP_001152765.1	C9JHM3	C9JHM3_HUMAN	zinc finger protein 737	191					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			breast(2)|kidney(1)|lung(7)|ovary(1)|stomach(1)|urinary_tract(1)	13						AATTTTCTTATGTGTAGTAAG	0.358													12	29	---	---	---	---					
SERPIND1	3053	broad.mit.edu	37	22	21138419	21138420	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr22:21138419_21138420insG	ENST00000215727.5	+	3	1332_1333	c.1049_1050insG	c.(1048-1050)gggfs	p.G350fs	PI4KA_ENST00000466162.1_Intron|PI4KA_ENST00000572273.1_Intron|PI4KA_ENST00000255882.6_Intron|SERPIND1_ENST00000406799.1_Frame_Shift_Ins_p.G350fs	NM_000185.3	NP_000176.2	P05546	HEP2_HUMAN	serpin peptidase inhibitor, clade D (heparin cofactor), member 1	350					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity			breast(2)|endometrium(3)|kidney(1)|large_intestine(2)|lung(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	13	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	CTGGAATACGTGGGGGGCATCA	0.540											OREG0026325	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	36	72	---	---	---	---					
MEI1	150365	broad.mit.edu	37	22	42191530	42191531	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr22:42191530_42191531insT	ENST00000401548.3	+	29	3690_3691	c.3650_3651insT	c.(3649-3651)cggfs	p.R1217fs	MEI1_ENST00000300398.4_Intron|MEI1_ENST00000400107.1_Frame_Shift_Ins_p.R550fs|MEI1_ENST00000476893.1_3'UTR	NM_152513.3	NP_689726.3	Q5TIA1	MEI1_HUMAN	meiosis inhibitor 1	1217							binding			breast(1)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(7)|lung(10)|prostate(2)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	30						CAGGCCCTGCATGGCTTCTTCC	0.574													23	36	---	---	---	---					
