Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
ACO1	48	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	32433772	32433772	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
AGAP4	119016	hgsc.bcm.edu	37	10	46342585	46342585	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
AHSA2	130872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	61413601	61413601	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
ALLC	55821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	3727534	3727534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
ANK2	287	broad.mit.edu;ucsc.edu	37	4	114213643	114213643	+	Silent	SNP	T	C	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
ARHGAP39	80728	hgsc.bcm.edu	37	8	145773342	145773344	+	In_Frame_Del	DEL	CTG	CTG	-	rs138155129	bycluster;by1000genomes	TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
ASH1L	55870	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155450216	155450216	+	Silent	SNP	G	G	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
ATAD5	79915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	29161396	29161396	+	Silent	SNP	G	G	T	rs114289357	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
ATP7B	540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	52518307	52518307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
B3GALTL	145173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	31903770	31903770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
C12orf35	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	32137779	32137779	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
C1orf84	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	43868851	43868851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
C1S	716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7174353	7174353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
C6orf204	0	hgsc.bcm.edu	37	6	118812811	118812813	+	In_Frame_Del	DEL	TGT	TGT	-	rs71866282	bycluster;by1000genomes	TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
CC2D2A	57545	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	15556749	15556749	+	Silent	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
CCDC24	149473	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	44461642	44461642	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
CDH11	1009	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	65038653	65038653	+	Silent	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
CHD1	1105	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	98228309	98228309	+	Silent	SNP	T	T	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
CNNM4	26504	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	97475200	97475200	+	Silent	SNP	T	T	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
DNAJB4	11080	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	78470926	78470926	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
ELMO1	9844	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	37262227	37262227	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
ERC1	23085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	1299182	1299182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
EVC	2121	broad.mit.edu;hgsc.bcm.edu	37	4	5733355	5733355	+	Silent	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
FAM5B	57795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	177249921	177249921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
GPR98	84059	broad.mit.edu;hgsc.bcm.edu	37	5	90079095	90079095	+	Silent	SNP	G	G	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
GPRC5C	55890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	72443073	72443073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
HLA-DPB1	3115	hgsc.bcm.edu	37	6	33054014	33054014	+	Frame_Shift_Del	DEL	A	A	-	rs142167543	bycluster;by1000genomes	TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
HS1BP3	64342	broad.mit.edu;ucsc.edu	37	2	20823713	20823713	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
KIAA0355	9710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	34791500	34791500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
KLF12	11278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	74420129	74420129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
KLHL4	56062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	86890606	86890606	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
KLK6	5653	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51466690	51466690	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
LARGE	9215	broad.mit.edu;hgsc.bcm.edu	37	22	33700423	33700423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
LARS	51520	hgsc.bcm.edu	37	5	145543912	145543913	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
LRP5	4041	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	68193567	68193567	+	Silent	SNP	C	C	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
LRRC42	115353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	54428053	54428053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
LRRTM1	347730	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	80530941	80530941	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
MAP1S	55201	broad.mit.edu;hgsc.bcm.edu	37	19	17838796	17838796	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
MAP1S	55201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17838790	17838790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
MARCKS	4082	hgsc.bcm.edu	37	6	114181301	114181302	+	In_Frame_Ins	INS	-	-	TGAGGC	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
MEI1	150365	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	42172238	42172238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
MEX3A	92312	broad.mit.edu;ucsc.edu	37	1	156047265	156047265	+	Silent	SNP	G	A	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
MEX3B	84206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	82336581	82336581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
MICAL3	57553	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	18368682	18368682	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
MIR199A2	406977	broad.mit.edu;hgsc.bcm.edu	37	1	172113783	172113783	+	RNA	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
MIR3184	100423003	broad.mit.edu;hgsc.bcm.edu	37	17	28444131	28444131	+	RNA	SNP	A	A	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
MOCS3	27304	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	49576416	49576416	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
MPND	84954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	4352949	4352949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
MTFR1	9650	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	66619369	66619369	+	Silent	SNP	A	A	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
MYO15A	51168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18062259	18062259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
NDST2	8509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75563696	75563696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
NFASC	23114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	204943409	204943409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
PCCB	5096	broad.mit.edu;hgsc.bcm.edu	37	3	136046479	136046479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
PCDH7	5099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	30724623	30724623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
PPP6R3	55291	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	68355413	68355413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
PREX1	57580	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47266546	47266546	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
RAD54L2	23132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	51667705	51667705	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
RIOK2	55781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	96503556	96503556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
RNF14	9604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	141362998	141362998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
RNF14	9604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	141363016	141363016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
SEC31A	22872	broad.mit.edu;hgsc.bcm.edu	37	4	83788105	83788105	+	Silent	SNP	T	T	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
SERPINH1	871	broad.mit.edu;hgsc.bcm.edu	37	11	75280027	75280027	+	Silent	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
SGCA	6442	hgsc.bcm.edu;ucsc.edu	37	17	48243426	48243427	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
SGK223	157285	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	8233967	8233967	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
SLC15A4	121260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	129285429	129285430	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
SLC5A11	115584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	24869990	24869990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
SLCO1B3	28234	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	21036504	21036504	+	Silent	SNP	A	A	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
SMARCA4	6597	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11144110	11144110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
SMC1B	27127	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	45745648	45745648	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
SNORD89	692205	broad.mit.edu;hgsc.bcm.edu	37	2	101889409	101889409	+	RNA	SNP	A	A	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
SPAG1	6674	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	101252794	101252795	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
SPECC1	92521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	20000054	20000054	+	Silent	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
SYNRG	11276	hgsc.bcm.edu;ucsc.edu	37	17	35880695	35880695	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
TARS2	80222	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	150459930	150459930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
TBL1XR1	79718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	176769354	176769354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
THRA	7067	hgsc.bcm.edu	37	17	38245611	38245612	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
TMEM180	79847	broad.mit.edu;ucsc.edu	37	10	104231152	104231152	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
TMEM182	130827	broad.mit.edu;hgsc.bcm.edu	37	2	103380788	103380788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
TRDMT1	1787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	17195548	17195548	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
TUBB3	10381	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	90001521	90001521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
UBE4B	10277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	10238756	10238758	+	In_Frame_Del	DEL	GGG	GGG	-	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	GGG	GGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
UNC13B	10497	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35385805	35385805	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
USP15	9958	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	62749239	62749239	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
YARS	8565	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	33245096	33245096	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
ZNF175	7728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52084648	52084648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
DIO2	1734	broad.mit.edu	37	14	80669073	80669073	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
OR7E37P	100506759	broad.mit.edu	37	13	42005884	42005885	+	RNA	INS	-	A	A	rs34102051		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
PBX2	5089	broad.mit.edu	37	6	32155509	32155509	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
TTC3	7267	broad.mit.edu	37	21	38460511	38460517	+	Frame_Shift_Del	DEL	GTATATG	-	-	novel		TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	GTATATG	GTATATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
Unknown	0	broad.mit.edu	37	1	205437150	205437151	+	RNA	INS	-	GTGT	GTGT	rs34140801	bycluster;by1000genomes;alternate_allele	TCGA-A3-3319-01A-01D-0966-08	TCGA-A3-3319-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a771a7ad-8dfa-46ee-849d-4478798c46a6	3cf11e36-4249-4b4d-9def-42e9ec38e274	
