Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ESPN	83715	hgsc.bcm.edu	37	1	6500833	6500833	+	Missense_Mutation	SNP	C	C	G	rs3817921		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	ESPN-514	NM_031475	exon4	c.C823G	p.P275A	GGGACCCCGCTGC	.	10	2	12	2	.	0	0	0	0	0
DRAXIN	374946	broad.mit.edu	37	1	11771907	11771907	+	Splice_Site	SNP	G	G	A	rs147444302	alternate_allele	TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	.	NM_198545	exon4	c.643-1G>A	.	TCTCCAGCAGGCA	.	27	6	29	0	G|1.000;C|0.000	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792762	109792762	+	Silent	SNP	T	T	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CELSR2-526	NM_001408	exon1	c.T61C	p.L21L	CTGCTGTTGCTGC	.	65	4	57	1	.	61	5	56	0	0
DDX20	11218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	112303729	112303729	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	DDX20-227	NM_007204	exon6	c.T944G	p.F315C	TAGTCTTTTCTAA	.	96	39	97	0	.	9	6	3	0	0
RXFP4	339403	broad.mit.edu;bcgsc.ca	37	1	155912175	155912175	+	Silent	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	RXFP4-90	NM_181885	exon1	c.G675A	p.L225L	CTACCTGCTGCTG	.	97	10	122	0	.	0	0	0	0	0
DSTYK	25778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205132071	205132071	+	Silent	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	DSTYK-333	NM_199462	exon5	c.C1621T	p.L541L	CCCATAGCATCCT	.	154	67	147	0	.	10	8	2	0	0
LEFTY1	10637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	226075314	226075314	+	Silent	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	LEFTY1-90	NM_020997	exon3	c.C522T	p.G174G	CTTCCAGCCGCTC	.	76	28	111	1	.	0	0	0	0	0
AGT	183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230841791	230841791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	AGT-226	NM_000029	exon3	c.G1012A	p.E338K	CGCTCTCAGTGAA	.	171	61	172	1	.	49	17	32	0	0
KIAA1279	26128	ucsc.edu	37	10	70775350	70775350	+	Silent	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	KIAA1279-91	NM_015634	exon7	c.G1044A	p.R348R	TTTAAGGAAAAAA	.	99	2	112	0	.	22	19	3	0	0
ERLIN1	10613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101911987	101911987	+	Silent	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	.	NM_006459	exon11	c.T948C	p.Y316Y	ATCTGAATATTTC	.	132	50	127	0	.	28	17	11	0	0
PPFIBP2	8495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	7669667	7669667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	PPFIBP2-273	NM_003621	exon18	c.T1696C	p.W566R	TGTGCATGGCTGG	.	117	44	140	0	.	14	5	9	0	0
SLC22A20	440044	bcgsc.ca	37	11	64985059	64985059	+	Missense_Mutation	SNP	G	G	T	rs113875023	alternate_allele	TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	SLC22A20-23	NM_001004326	exon3	c.G539T	p.G180V	CTTCGGGGGCCGC	.	46	10	56	0	G|0.992;A|0.008	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751585	76751585	+	Splice_Site	SNP	T	T	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	.	NM_138706	exon3	c.988+1T>C	.	GCATCCTGGCCCT	.	5	3	0	0	.	0	0	0	0	0
KLRC4-KLRK1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	10539567	10539567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	.	NM_001199805	exon8	c.G83A	p.S28N	AAATCACTCTTCT	.	56	18	70	0	.	0	0	0	0	0
STK38L	23012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	27468238	27468238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	STK38L-980	NM_015000	exon9	c.C792A	p.N264K	CATGAACTCAAAG	.	116	29	115	1	.	17	13	4	0	0
KRT18	3875	broad.mit.edu	37	12	53344644	53344644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	KRT18-91	NM_000224	exon3	c.A611G	p.E204G	AGATCGAGGCTCT	.	18	4	30	0	.	1446	679	764	1	2
KRR1	11103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	75895546	75895546	+	Silent	SNP	T	T	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	KRR1-92	NM_007043	exon9	c.A960G	p.A320A	AATAAATGCTTTG	.	73	21	87	0	.	22	18	4	0	0
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109692084	109692084	+	Silent	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	ACACB-98	NM_001093	exon43	c.C6111T	p.L2037L	ATTCCTCCCATCC	.	240	95	321	0	.	12	8	4	0	0
EXOC5	10640	ucsc.edu	37	14	57684753	57684753	+	Silent	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	EXOC5-137	NM_006544	exon15	c.G1560A	p.K520K	TTTTTTCTTCTGA	.	71	1	96	0	.	16	14	2	0	0
CDAN1	146059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43024004	43024004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CDAN1-92	NM_138477	exon11	c.G1553A	p.G518D	CCAGCACCACCAG	.	94	26	80	0	.	2	2	0	0	0
PSTPIP1	9051	hgsc.bcm.edu	37	15	77328195	77328195	+	Silent	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	PSTPIP1-23	NM_003978	exon14	c.A1038G	p.T346T	CTACACAGCCATC	.	32	3	60	0	.	10	10	0	0	0
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2138135	2138135	+	Missense_Mutation	SNP	G	G	A	rs201206500		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	TSC2-1908	NM_000548	exon40	c.G5155A	p.A1719T	CTGCACGCAAATG	.	121	41	160	1	G|1.000;A|0.000	0	0	0	0	0
MGRN1	23295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	4731570	4731570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	MGRN1-92	NM_015246	exon13	c.C1151A	p.P384H	TCCCACCTGGCTA	.	83	24	94	1	.	104	53	51	0	0
PDXDC1	23042	ucsc.edu;bcgsc.ca	37	16	15130101	15130101	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	PDXDC1-91	NM_015027	exon23	c.C2336A	p.S779X	ACCACTCACAGGT	.	167	49	241	2	.	102	43	59	0	0
STARD3	10948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37817259	37817259	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	STARD3-90	NM_006804	exon13	c.G1060T	p.E354X	CGCATTGAGCGGC	.	102	42	124	2	.	18	17	1	0	0
TMC8	147138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76133427	76133427	+	Silent	SNP	T	T	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	TMC8-90	NM_152468	exon10	c.T1239G	p.V413V	CAACGTTTGTGAC	.	203	76	212	1	.	0	0	0	0	0
APC2	10297	hgsc.bcm.edu	37	19	1469819	1469819	+	Silent	SNP	G	G	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	APC2-290	NM_005883	exon15	c.G6519C	p.T2173T	CTCCACGCCCGAG	.	3	3	2	1	.	0	0	0	0	0
RAB3D	9545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11447891	11447891	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	RAB3D-653	NM_004283	exon2	c.A185T	p.K62M	ACGGTCTTGACCT	.	395	130	451	2	.	22	11	11	0	0
FOSL2	2355	ucsc.edu	37	2	28631654	28631654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	FOSL2-712	NM_005253	exon3	c.G383A	p.R128H	AGCGTCGCATCCG	.	42	4	47	0	.	251	251	0	0	0
NRXN1	9378	hgsc.bcm.edu	37	2	50574025	50574025	+	Silent	SNP	G	G	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	NRXN1-92	NM_138735	exon1	c.C63G	p.G21G	GCCGCCGCCGCCG	.	4	3	2	1	.	1	1	0	0	0
CXCR1	3577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219029397	219029397	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CXCR1-658	NM_000634	exon2	c.C538G	p.P180A	TGTTTGGATGGTA	.	44	14	77	1	.	0	0	0	0	0
CXCR1	3577	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219029403	219029403	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CXCR1-658	NM_000634	exon2	c.T532A	p.Y178N	GATGGTAAGCCTG	.	36	13	63	1	.	0	0	0	0	0
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3016489	3016489	+	Silent	SNP	G	G	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	PTPRA-227	NM_002836	exon26	c.G2100T	p.V700V	TGAAGTGGGCATC	.	115	34	127	1	.	91	49	42	0	0
CST9L	128821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23548869	23548869	+	Silent	SNP	G	G	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CST9L-90	NM_080610	exon1	c.C219A	p.I73I	ATTCAAGATGTGC	.	66	19	81	0	.	0	0	0	0	0
PFKL	5211	broad.mit.edu	37	21	45741733	45741733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	PFKL-251	NM_002626	exon13	c.G1313A	p.G438D	ACGATGGCTTCGA	.	163	6	199	0	.	186	181	5	0	0
SGSM3	27352	hgsc.bcm.edu	37	22	40804935	40804935	+	Splice_Site	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	SGSM3-494	NM_015705	exon19	c.1903-2A>G	.	GTTCCCAGGCTGT	.	30	2	42	1	.	0	0	0	0	0
CTDSPL	10217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38009318	38009318	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CTDSPL-90	NM_001008392	exon5	c.C371G	p.P124R	TCTAGCCTATTAG	.	54	13	63	0	.	0	0	0	0	0
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46008824	46008824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	FYCO1-91	NM_024513	exon8	c.G2002A	p.A668T	TGCTGGCCTGCTC	.	150	62	173	0	.	13	3	10	0	0
IDUA	3425	hgsc.bcm.edu	37	4	980971	980971	+	Missense_Mutation	SNP	T	T	G	rs10794537		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	IDUA-91	NM_000203	exon1	c.T99G	p.H33Q	GGTGCATGTGGAC	.	2	2	0	0	T|0.175;G|0.825	7	0	7	0	0
FNIP2	57600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	159825696	159825696	+	Silent	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	FNIP2-68	NM_020840	exon17	c.A3345G	p.X1115X	CTTATAAGCTAAA	.	121	46	172	0	.	14	9	5	0	0
SH3RF1	57630	hgsc.bcm.edu	37	4	170043337	170043337	+	Silent	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	SH3RF1-567	NM_020870	exon7	c.T1260C	p.A420A	AGCAGCAGCGGCG	.	50	3	76	0	.	15	15	0	0	0
ZCCHC10	54819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132334373	132334373	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	ZCCHC10-90	NM_017665	exon4	c.T415C	p.S139P	AATCAGAGGAGGA	.	82	20	99	1	.	21	12	9	0	0
PCDHGB3	56102	hgsc.bcm.edu	37	5	140751166	140751166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	.	NM_018924	exon1	c.A1205G	p.Y402C	ACACATACAGGTT	.	57	3	107	0	.	1	1	0	0	0
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	145610424	145610424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	RBM27-70	NM_018989	exon6	c.C794A	p.S265Y	ATAGCTCTTCCAA	.	97	37	118	0	.	6	5	1	0	0
ARSI	340075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149677576	149677576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	ARSI-92	NM_001012301	exon2	c.C911T	p.S304L	CCCCCCGAGAAAG	.	71	28	94	0	.	0	0	0	0	0
F12	2161	broad.mit.edu;bcgsc.ca	37	5	176830985	176830985	+	Silent	SNP	G	G	A	rs148322446	alternate_allele	TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	F12-90	NM_000505	exon10	c.C1125T	p.G375G	CAGCCCGCCAACG	.	28	16	44	0	G|1.000;C|0.000	0	0	0	0	0
NDUFAF4	29078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	97344647	97344647	+	Silent	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	NDUFAF4-91	NM_014165	exon2	c.T213C	p.D71D	TTTGGAATCAACA	.	114	32	128	0	.	12	5	7	0	0
CALU	813	broad.mit.edu	37	7	128407599	128407599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CALU-90	NM_001199671	exon7	c.C757A	p.R253S	AAGAACCGTGATG	.	134	5	141	0	.	89	89	0	0	0
CHCHD3	54927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	132709362	132709362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CHCHD3-90	NM_017812	exon3	c.A195T	p.R65S	AGCTACTCTTCTT	.	208	19	200	1	.	62	49	13	0	0
KRBA1	84626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149416749	149416749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	KRBA1-91	.	.	.	.	ACGAGACGCTGGT	.	46	10	43	0	.	4	4	0	0	0
PABPC1	26986	hgsc.bcm.edu	37	8	101719226	101719226	+	Splice_Site	SNP	C	C	G	rs112580522	bycluster	TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	PABPC1-68	NM_002568	exon11	c.1337-1G>C	.	GGAATGCTGCATT	.	54	6	63	1	G|1.000;|0.000	0	0	0	0	0
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133931710	133931710	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	TG-145	NM_003235	exon21	c.T4468G	p.C1490G	TTGGCCTGTGTCC	.	109	41	102	0	.	0	0	0	0	0
SMARCA2	6595	hgsc.bcm.edu	37	9	2039761	2039761	+	Silent	SNP	A	A	G	rs13296982		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	SMARCA2-653	NM_139045	exon4	c.A651G	p.Q217Q	GCAGCAACAACAG	.	41	3	39	0	A|1.000;|0.000	33	33	0	0	0
USP11	8237	hgsc.bcm.edu	37	X	47102998	47102998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	USP11-659	NM_004651	exon13	c.T1916C	p.L639P	ACCGGCTCTCGTA	.	24	2	31	0	.	0	0	0	0	0
GNPTAB	79158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	102159058	102159058	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	GNPTAB-92	NM_024312	exon13	c.1637delT	p.V546fs	.	.	100	33	101	0	.	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	63414861	63414861	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	LACTB-90	NM_171846	exon2	c.384delG	p.V128fs	.	.	106	35	107	0	.	0	0	0	0	0
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	43464597	43464598	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	EPG5-580	NM_020964	exon30	c.5289_5290insTT	p.F1763fs	.	.	121	39	143	0	.	0	0	0	0	0
