Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19482811	19482811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	UBR4-612	NM_020765	exon42	c.C6026T	p.P2009L	GAACCAGGTAACC	.	418	155	474	1	.	9	6	3	0	0
ADPRHL2	54936	broad.mit.edu	37	1	36557328	36557328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ADPRHL2-91	NM_017825	exon3	c.C418T	p.R140W	CCTGCCCGGGCCC	.	104	5	111	1	.	20	20	0	0	0
STK40	83931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36820910	36820910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	STK40-83	NM_032017	exon6	c.T467A	p.L156H	TTGATGAGGTCAG	.	187	66	215	0	.	7	6	1	0	0
KIAA0754	643314	broad.mit.edu	37	1	39880152	39880152	+	Silent	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	.	NM_015038	exon1	c.A4215T	p.V1405V	TGAGGTAATTGTC	.	89	22	67	2	.	0	0	0	0	0
HSPB11	51668	broad.mit.edu;bcgsc.ca	37	1	54395757	54395757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	HSPB11-90	NM_016126	exon3	c.C160T	p.H54Y	GTTTGTGGAAACA	.	132	5	73	0	.	10	10	0	0	0
DNAJC6	9829	broad.mit.edu	37	1	65775557	65775557	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DNAJC6-272	NM_001256864	exon1	c.C129T	p.A43A	GAACGCCGGGGCA	.	53	20	47	0	.	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109807154	109807154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CELSR2-526	NM_001408	exon11	c.G5368A	p.G1790S	GAGCAAGGCTGTA	.	126	50	135	0	.	10	6	4	0	0
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150531493	150531493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ADAMTSL4-92	NM_019032	exon16	c.G2615T	p.S872I	TTGGGAGTGGGGC	.	29	19	21	0	.	5	2	3	0	0
TCHHL1	126637	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152059687	152059687	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TCHHL1-92	NM_001008536	exon3	c.G471A	p.V157V	TGGGTCCACTCTG	.	175	54	180	1	.	0	0	0	0	0
KCNN3	3782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154744543	154744543	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KCNN3-91	NM_001204087	exon3	c.G1356A	p.K452K	GAGCGTCTTCATG	.	122	50	167	1	.	0	0	0	0	0
ELK4	2005	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	205588957	205588957	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ELK4-658	NM_021795	exon3	c.G1217C	p.X406S	AACTTTCACATGA	.	75	27	58	0	.	1	1	0	0	0
PRKCQ	5588	broad.mit.edu	37	10	6557067	6557067	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	PRKCQ-1380	NM_006257	exon2	c.A31C	p.N11H	CAAAGTTGGACAA	.	106	9	95	3	.	2	2	0	0	0
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55600213	55600213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	PCDH15-193	NM_001142763	exon30	c.G3865T	p.V1289F	CTACGACCTTGGC	.	109	44	180	1	.	0	0	0	0	0
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	83635808	83635808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NRG3-522	NM_001165972	exon1	c.T712C	p.S238P	CACGATTCTACTC	.	150	62	125	0	.	0	0	0	0	0
KIF11	3832	bcgsc.ca	37	10	94373230	94373230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KIF11-227	NM_004523	exon8	c.G886A	p.G296R	ACTTTGGGAAGGG	.	66	4	61	0	.	0	0	0	0	0
CYP2C8	1558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	96818110	96818110	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CYP2C8-90	NM_000770	exon5	c.C801G	p.F267L	GATCAGGAAGCAA	.	121	48	68	0	.	0	0	0	0	0
SORBS1	10580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	97096528	97096528	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SORBS1-155	NM_001034954	exon28	c.A3389C	p.K1130T	TCTGCTTTCCTCT	.	116	50	93	0	.	0	0	0	0	0
MARK2	2011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63671476	63671476	+	Silent	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MARK2-766	NM_001039469	exon15	c.C1533G	p.S511S	AGGGTCCCGGGCC	.	38	13	24	0	.	3	1	2	0	0
DPF2	5977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65107956	65107956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DPF2-91	NM_006268	exon2	c.C133G	p.Q45E	GACTCACAGACCG	.	137	53	165	0	.	13	9	4	0	0
ADRBK1	156	bcgsc.ca	37	11	67048958	67048958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ADRBK1-521	NM_001619	exon9	c.C676T	p.R226C	AAAAAGCGCATCA	.	62	4	45	0	.	13	13	0	0	0
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	92599961	92599961	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	FAT3-73	NM_001008781	exon21	c.T11713A	p.L3905M	GGAATCTTGGGCA	.	102	43	88	0	.	0	0	0	0	0
ALKBH8	91801	ucsc.edu	37	11	107423870	107423870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ALKBH8-68	NM_138775	exon5	c.A559G	p.N187D	TGTTGTTCTCATA	.	38	4	15	0	.	1	1	0	0	0
CCDC15	80071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	124847425	124847425	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CCDC15-69	NM_025004	exon6	c.G682C	p.G228R	ATAAGAGGAGAGT	.	57	19	24	0	.	0	0	0	0	0
STT3A	3703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	125478106	125478106	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	STT3A-90	NM_152713	exon9	c.T883G	p.F295V	CAACAATTTGAAG	.	96	43	105	0	.	21	6	15	0	0
IQSEC3	440073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	275007	275007	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	IQSEC3-560	NM_001170738	exon11	c.G2922A	p.L974L	GGACCTGAAGGAG	.	195	100	143	0	.	0	0	0	0	0
CD163L1	283316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7527336	7527336	+	Silent	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CD163L1-100	NM_174941	exon13	c.C3111A	p.R1037R	CACTAGGCGGAGC	.	183	53	142	1	.	0	0	0	0	0
SCAF11	9169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	46342224	46342224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SCAF11-93	NM_004719	exon5	c.A394G	p.I132V	ACCTTATACAGCT	.	25	13	25	0	.	0	0	0	0	0
MTERFD3	80298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	107371368	107371368	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MTERFD3-68	NM_001033050	exon3	c.T1125G	p.F375L	AGGGTTAAATAAT	.	124	68	54	0	.	8	6	2	0	0
DIABLO	56616	bcgsc.ca	37	12	122710521	122710521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DIABLO-659	NM_138929	exon2	c.C41T	p.S14L	AAGAATGAAGTTA	.	52	4	33	0	.	1	1	0	0	0
MMP17	4326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132334421	132334421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MMP17-226	NM_016155	exon9	c.C1279T	p.P427S	AGCCTCCCGCCTG	.	270	85	217	0	.	0	0	0	0	0
SUCLA2	8803	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48571053	48571053	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SUCLA2-226	NM_003850	exon2	c.G196C	p.E66Q	CAGCTTCTTGCAA	.	187	55	115	1	.	10	6	4	0	0
STK24	8428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99127511	99127511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	STK24-979	NM_003576	exon4	c.C468A	p.D156E	TTTAATGTCTCTG	.	123	25	119	0	.	0	0	0	0	0
CIDEB	27141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24775587	24775587	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CIDEB-90	NM_014430	exon5	c.C329G	p.P110R	CTTGTAGGGCTCC	.	150	51	139	0	.	6	4	2	0	0
ACTR10	55860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	58680398	58680398	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ACTR10-90	NM_018477	exon6	c.G500C	p.G167A	CCCTAGGAGGAAA	.	27	16	34	0	.	20	10	10	0	0
SPTLC2	9517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	78036838	78036838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SPTLC2-92	NM_004863	exon5	c.G645T	p.K215N	TTCATGCTTGTCC	.	75	34	64	0	.	0	0	0	0	0
C14orf159	80017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	91681816	91681816	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	C14orf159-92	NM_001102368	exon13	c.C1632T	p.H544H	TGTCCACAGTCAG	.	95	39	117	0	.	42	18	24	0	0
AHNAK2	113146	broad.mit.edu	37	14	105406110	105406110	+	Silent	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	AHNAK2-47	NM_138420	exon7	c.T15678G	p.G5226G	TGCTTCACCCCCT	.	95	23	91	9	.	32	32	0	0	0
MGA	23269	bcgsc.ca	37	15	42057124	42057124	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MGA-522	NM_001164273	exon23	c.C7785T	p.N2595N	TGCCAACCTTGTG	.	135	5	157	0	.	0	0	0	0	0
ELL3	80237	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44066413	44066413	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ELL3-91	NM_025165	exon9	c.T1005G	p.I335M	TCTTTTAATCTCT	.	144	58	160	1	.	1	0	1	0	0
FAM63B	54629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	59139573	59139573	+	Silent	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	FAM63B-90	NM_001040450	exon7	c.A1446T	p.V482V	CAACGTAGATGGT	.	48	17	37	0	.	4	3	1	0	0
DAPK2	23604	broad.mit.edu;ucsc.edu	37	15	64200745	64200745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DAPK2-333	NM_014326	exon12	c.C1087T	p.P363S	TCCGTGGGTGGAG	.	48	10	60	1	.	0	0	0	0	0
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	89400337	89400337	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ACAN-25	NM_001135	exon12	c.T4521A	p.S1507R	TGTCAGTGAACTT	.	50	13	39	0	.	0	0	0	0	0
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24581079	24581079	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RBBP6-230	NM_006910	exon17	c.A3068T	p.N1023I	GGAAGAATGATGG	.	80	28	37	0	.	1	0	1	0	0
CHST6	4166	bcgsc.ca	37	16	75513372	75513372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CHST6-90	NM_021615	exon3	c.G355A	p.D119N	AGAGGTCGGACAG	.	95	61	32	1	.	0	0	0	0	0
ARHGEF15	22899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8215790	8215790	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ARHGEF15-230	NM_025014	exon2	c.T433G	p.S145A	TCTGCCTCAGCTC	.	74	35	54	0	.	1	1	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	402	33	175	11	.	20	3	17	0	0
FBXO47	494188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37099134	37099134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	FBXO47-90	NM_001008777	exon9	c.T980C	p.L327P	ATTAGGAGACGTG	.	101	34	86	0	.	0	0	0	0	0
COPZ2	51226	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	46103806	46103806	+	Silent	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	.	.	.	.	.	CAATAACGACCAT	.	60	16	36	0	.	20	12	8	0	0
AMZ2	51321	hgsc.bcm.edu;bcgsc.ca	37	17	66246341	66246341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	AMZ2-22	NM_001033574	exon2	c.C13T	p.R5W	ATAATACGGCACT	.	59	5	30	0	.	0	0	0	0	0
C17orf70	80233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79518169	79518169	+	Silent	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	C17orf70-92	NM_025161	exon3	c.T351C	p.P117P	GTCCACAGGGATC	.	559	133	446	1	.	19	15	4	0	0
DLGAP1	9229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	3508641	3508641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DLGAP1-229	NM_001242761	exon11	c.C2498T	p.T833I	ACTGCGGTTCGGA	.	70	24	66	0	.	1	1	0	0	0
RALBP1	10928	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	9524704	9524704	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RALBP1-522	NM_006788	exon5	c.C1166G	p.P389R	CGATGCCCACGCT	.	124	48	130	1	.	26	13	13	0	0
DSG4	147409	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	28966661	28966661	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DSG4-177	NM_001134453	exon3	c.T95A	p.F32Y	AGGAATTTGACAT	.	160	65	131	2	.	0	0	0	0	0
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29116286	29116286	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DSG2-563	NM_001943	exon11	c.T1545C	p.V515V	GAATGTTACTGCA	.	109	35	118	0	.	29	18	11	0	0
UBXN6	80700	ucsc.edu	37	19	4453972	4453972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	UBXN6-90	NM_025241	exon2	c.T202C	p.S68P	CCCGGGACTGCTT	.	12	4	13	0	.	73	39	34	0	0
LRRC8E	80131	broad.mit.edu	37	19	7964010	7964010	+	Silent	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	LRRC8E-92	NM_001268284	exon4	c.T603G	p.G201G	GGAGGGTGAGAAG	.	93	28	81	16	.	1	1	0	0	0
ZNF799	90576	ucsc.edu;bcgsc.ca	37	19	12502160	12502160	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ZNF799-74	NM_001080821	exon4	c.C1052A	p.S351X	TTCAGTGAACTAG	.	91	35	80	2	.	4	1	3	0	0
RDH13	112724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55570627	55570627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RDH13-92	NM_001145971	exon2	c.G82T	p.G28W	AAGCCCCACCGGT	.	87	37	69	0	.	12	7	5	0	0
GEN1	348654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17962535	17962535	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GEN1-359	NM_182625	exon14	c.C2056G	p.Q686E	TATCCTCAGGATA	.	108	54	32	0	.	1	1	0	0	0
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24469667	24469667	+	Silent	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ITSN2-539	NM_147152	exon28	c.T3384C	p.P1128P	CATACCAGGATGA	.	71	35	28	0	.	0	0	0	0	0
NRBP1	29959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27660178	27660178	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NRBP1-334	NM_013392	exon10	c.A854T	p.Q285L	TGCCACAGGAAGC	.	415	233	381	2	.	57	19	38	0	0
RFX8	731220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102014128	102014128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	.	NM_001145664	exon12	c.C1304A	p.P435H	CCCATAGGAAGGC	.	176	50	138	0	.	0	0	0	0	0
NPHP1	4867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	110922202	110922202	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NPHP1-92	NM_207181	exon8	c.T834A	p.N278K	CATCCTATTTCGC	.	130	38	88	0	.	2	0	2	0	0
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	122161975	122161975	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CLASP1-91	NM_015282	exon26	c.C2705G	p.T902S	ATCCGAGTGAAGA	.	160	44	154	0	.	8	5	3	0	0
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	241725900	241725900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KIF1A-91	NM_001244008	exon6	c.G460A	p.V154I	CACGGACGCGCTC	.	238	22	203	0	.	0	0	0	0	0
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	46254225	46254225	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NCOA3-229	NM_181659	exon5	c.G357A	p.Q119Q	ACTTCAGGCAAGT	.	42	15	18	0	.	0	0	0	0	0
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49509272	49509272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ADNP-92	NM_015339	exon5	c.T1979C	p.L660P	TAGGTGAGCTTTT	.	233	102	220	0	.	17	7	10	0	0
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	15561570	15561570	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	LIPI-70	NM_198996	exon2	c.C280T	p.Q94X	TCTTTTGTGTGTT	.	155	46	94	0	.	0	0	0	0	0
HLCS	3141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	38309141	38309141	+	Missense_Mutation	SNP	C	C	G	rs148324626		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	HLCS-157	NM_000411	exon5	c.G604C	p.E202Q	TGTCCTCCAGCAG	.	154	54	184	0	C|1.000;G|0.000	3	3	0	0	0
TSPEAR	54084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45949793	45949793	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TSPEAR-244	NM_144991	exon5	c.C678T	p.T226T	CCTTGGGGTGGCG	.	28	12	23	0	.	0	0	0	0	0
IL17RA	23765	hgsc.bcm.edu	37	22	17566096	17566096	+	Silent	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	IL17RA-92	NM_014339	exon1	c.C115A	p.R39R	GACCACCGGGCGC	.	8	8	1	0	.	1	0	1	0	0
HIC2	23119	ucsc.edu	37	22	21800382	21800382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	HIC2-703	NM_015094	exon3	c.G1198A	p.E400K	GAGGAGGAGAACG	.	21	4	10	0	.	0	0	0	0	0
CSNK1E	1454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38690131	38690131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CSNK1E-1193	NM_001894	exon9	c.G1202A	p.R401Q	GGGATCCGGGAGA	.	53	14	51	0	.	10	8	2	0	0
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	51160300	51160300	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SHANK3-69	NM_033517	exon21	c.C3997G	p.P1333A	CCACCCCCTGCCC	.	36	10	34	0	.	0	0	0	0	0
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46009857	46009857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	FYCO1-91	NM_024513	exon8	c.G969T	p.E323D	TCCTAGCTCCAGG	.	47	11	79	0	.	9	5	4	0	0
RBM5	10181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50155814	50155814	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RBM5-278	NM_005778	exon25	c.T2373A	p.Y791X	CGCATATGGTTTG	.	150	63	172	0	.	43	28	15	0	0
KIAA1524	57650	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108288411	108288411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KIAA1524-92	NM_020890	exon9	c.G938A	p.R313H	ATATGGCGCAGCT	.	276	111	195	2	.	0	0	0	0	0
WDR52	55779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113120585	113120585	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	WDR52-90	NM_001164496	exon10	c.T1172G	p.I391R	TCCCATATCTTGT	.	81	36	38	0	.	0	0	0	0	0
KALRN	8997	broad.mit.edu	37	3	124209630	124209630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KALRN-738	NM_003947	exon30	c.C4480T	p.R1494W	AAGGGGCGGGAGC	.	80	5	77	0	.	0	0	0	0	0
CCRL1	51554	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132319273	132319273	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CCRL1-658	NM_178445	exon1	c.A32C	p.Y11S	CAGATTATTATTA	.	231	84	196	1	.	1	0	1	0	0
MYNN	55892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169496621	169496621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MYNN-91	NM_001185118	exon4	c.G332A	p.C111Y	CTAAATGCAAAAT	.	81	32	75	0	.	2	0	2	0	0
KNG1	3827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186435425	186435425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KNG1-92	NM_000893	exon1	c.G94T	p.D32Y	GACAAGGATTTAT	.	157	37	129	0	.	0	0	0	0	0
CPZ	8532	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8607801	8607801	+	Silent	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CPZ-93	NM_001014447	exon5	c.G795C	p.L265L	GTACCTGTGCTCT	.	206	71	175	1	.	0	0	0	0	0
TBC1D19	55296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	26585819	26585819	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TBC1D19-153	NM_018317	exon1	c.T4C	p.L2L	GAAATGTTGCAGG	.	70	29	54	0	.	2	1	1	0	0
N4BP2	55728	ucsc.edu	37	4	40122111	40122111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	N4BP2-602	NM_018177	exon9	c.G2380A	p.D794N	CCAGTTGATAAGA	.	45	4	26	0	.	0	0	0	0	0
GRSF1	2926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71702003	71702003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	.	NM_002092	exon2	c.T386C	p.L129P	GGTGGAAGGTCTT	.	154	46	141	0	.	30	15	15	0	0
TBC1D9	23158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	141600812	141600812	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TBC1D9-23	NM_015130	exon4	c.C546T	p.S182S	GTTAATGCTGAGG	.	82	30	61	0	.	3	1	2	0	0
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38418272	38418272	+	Silent	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	EGFLAM-187	NM_001205301	exon12	c.C1599A	p.G533G	TCAAGGCTGTGTG	.	120	35	153	0	.	0	0	0	0	0
DAB2	1601	broad.mit.edu	37	5	39383200	39383200	+	Silent	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DAB2-227	NM_001343	exon10	c.T861C	p.F287F	GGTGGGAAAGAAG	.	183	6	182	0	.	28	27	1	0	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	89979468	89979468	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GPR98-103	NM_032119	exon28	c.T5730C	p.D1910D	TCCTGATGGTGAT	.	108	38	97	0	.	0	0	0	0	0
STK10	6793	hgsc.bcm.edu	37	5	171471934	171471934	+	Silent	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	STK10-1022	NM_005990	exon19	c.A2859C	p.P953P	CTTGCTTGGGGTG	.	98	5	95	0	.	8	8	0	0	0
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32038155	32038155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TNXB-90	NM_019105	exon14	c.G5027A	p.R1676H	CCAAGGCGGGGTG	.	82	27	49	0	.	1	1	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51768400	51768400	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	PKHD1-603	NM_170724	exon43	c.A6991C	p.I2331L	CCTCTATAACATT	.	118	41	97	0	.	0	0	0	0	0
MDN1	23195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90459294	90459294	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MDN1-100	NM_014611	exon25	c.C3583T	p.Q1195X	GATTTTGGGTGGC	.	138	70	138	1	.	0	0	0	0	0
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	33380559	33380559	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	BBS9-230	NM_014451	exon11	c.G1249C	p.V417L	GTCGTGGTTTCTC	.	94	34	19	0	.	9	4	5	0	0
GBAS	2631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	56046042	56046042	+	Splice_Site	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GBAS-514	NM_001483	exon3	c.233-1G>C	.	GTTTCAGTTCACA	.	213	89	102	0	.	0	0	0	0	0
SLC13A4	26266	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	135370357	135370357	+	Silent	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SLC13A4-90	NM_012450	exon14	c.G1518T	p.L506L	TGCCAGCAGGGTG	.	243	88	157	1	.	0	0	0	0	0
MLL3	58508	broad.mit.edu	37	7	151921114	151921114	+	Nonsense_Mutation	SNP	A	A	T	rs4024337		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MLL3-1398	NM_170606	exon20	c.T3309A	p.C1103X	TTGTCTACATTGC	.	450	9	239	1	.	0	0	0	0	0
ANK1	286	broad.mit.edu;bcgsc.ca	37	8	41582026	41582026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ANK1-716	NM_001142446	exon7	c.A758C	p.N253T	GCCACGTTGAGGT	.	42	7	54	0	.	0	0	0	0	0
TRPM6	140803	broad.mit.edu	37	9	77448994	77448994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TRPM6-335	NM_017662	exon6	c.C589T	p.H197Y	AGGAATGAGAGGA	.	175	5	134	0	.	0	0	0	0	0
GOLGA2	2801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131021446	131021446	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GOLGA2-91	NM_004486	exon19	c.G2016A	p.Q672Q	CCTCACCTGGGTT	.	61	22	73	0	.	1	0	1	0	0
C9orf78	51759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	132593305	132593305	+	Silent	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	C9orf78-90	NM_016520	exon6	c.C387A	p.I129I	TTCCACGATCCCT	.	123	45	151	0	.	30	13	17	0	0
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	10066562	10066562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	WWC3-134	NM_015691	exon8	c.A674C	p.K225T	ATGATAAAACAAG	.	38	27	25	0	.	6	0	6	0	0
SSX5	6758	broad.mit.edu	37	X	48054486	48054486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SSX5-90	NM_021015	exon3	c.C149A	p.A50D	CTGCTGGCTGGCT	.	260	6	236	1	.	0	0	0	0	0
RLIM	51132	broad.mit.edu	37	X	73811995	73811995	+	Silent	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RLIM-228	NM_183353	exon5	c.C1155A	p.P385P	ACGAATGGGAATT	.	79	4	104	0	.	1	1	0	0	0
XIAP	331	bcgsc.ca	37	X	123020210	123020210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	XIAP-1084	NM_001204401	exon2	c.G698T	p.R233L	TGGGCCGGAATCT	.	41	23	46	2	.	0	0	0	0	0
PNCK	139728	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152938463	152938463	+	Splice_Site	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	PNCK-207	NM_001135740	exon3	c.119+1G>C	.	CACTCACGAGCCG	.	91	66	112	6	.	0	0	0	0	0
LAMTOR2	28956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156027791	156027791	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	LAMTOR2-523	NM_014017	exon3	c.254delG	p.R85fs	.	.	315	118	311	0	.	0	0	0	0	0
GPR123	84435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	134912186	134912187	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GPR123-90	NM_001083909	exon4	c.174_175del	p.58_59del	.	.	55	18	45	0	.	0	0	0	0	0
C2CD2L	9854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118984691	118984704	+	Frame_Shift_Del	DEL	TTTCCAAGGTAACA	TTTCCAAGGTAACA	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TTTCCAAGGTAACA	TTTCCAAGGTAACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	C2CD2L-68	NM_014807	exon12	c.1619_1626del	p.540_542del	.	.	126	30	141	0	.	0	0	0	0	0
MARK3	4140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	103969341	103969341	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MARK3-360	NM_001128918	exon18	c.2039delG	p.R680fs	.	.	203	69	303	0	.	0	0	0	0	0
SLC5A6	8884	hgsc.bcm.edu;bcgsc.ca	37	2	27428892	27428892	+	Splice_Site	DEL	A	A	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SLC5A6-92	NM_021095	exon7	c.579+2T>-	.	.	.	512	109	453	0	.	0	0	0	0	0
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	109380179	109380179	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RANBP2-675	NM_006267	exon20	c.3184delA	p.N1062fs	.	.	110	53	88	0	.	0	0	0	0	0
SLC32A1	140679	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	37353586	37353607	+	Frame_Shift_Del	DEL	GGGCGCTGAAGCGCCCGTCGAG	GGGCGCTGAAGCGCCCGTCGAG	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	GGGCGCTGAAGCGCCCGTCGAG	GGGCGCTGAAGCGCCCGTCGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SLC32A1-90	NM_080552	exon1	c.219_240del	p.73_80del	.	.	111	42	30	0	.	0	0	0	0	0
IFT122	55764	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	129214436	129214436	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	IFT122-92	NM_052985	exon19	c.2347delT	p.F783fs	.	.	251	114	294	0	.	0	0	0	0	0
ATP11B	23200	broad.mit.edu	37	3	182607235	182607235	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ATP11B-93	NM_014616	exon25	c.2881delT	p.F961fs	AAAACATTTCTTT	.	17	9	10	0	.	0	0	0	0	0
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176709581	176709584	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NSD1-188	NM_022455	exon19	c.6008_6009del	p.2003_2003del	.	.	83	24	101	0	.	0	0	0	0	0
KCNK5	8645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	39159405	39159412	+	Frame_Shift_Del	DEL	TTGTGGAC	TTGTGGAC	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TTGTGGAC	TTGTGGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KCNK5-227	NM_003740	exon5	c.754_761del	p.252_254del	.	.	95	20	169	0	.	0	0	0	0	0
AKAP12	9590	hgsc.bcm.edu;bcgsc.ca	37	6	151671659	151671659	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	AKAP12-293	NM_005100	exon4	c.2133delC	p.H711fs	.	.	142	50	155	0	.	0	0	0	0	0
ZBTB2	57621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	151686673	151686676	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TTTC	TTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ZBTB2-91	NM_020861	exon3	c.1525_1528del	p.509_510del	.	.	127	39	137	0	.	0	0	0	0	0
TAF6	6878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99711723	99711723	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TAF6-91	NM_001190415	exon2	c.221delA	p.Q74fs	.	.	421	177	276	0	.	0	0	0	0	0
GCM1	8521	hgsc.bcm.edu;bcgsc.ca	37	6	52993368	52993369	+	In_Frame_Ins	INS	-	-	AAA	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GCM1-90	NM_003643	exon6	c.947_948insTTT	p.Y316delinsFY	.	.	112	22	140	0	.	0	0	0	0	0
OR13G1	441933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247836182	247836183	+	Missense_Mutation	DNP	CG	CG	AA	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	OR13G1-69	NM_001005487	exon1	c.C161T	p.T54I	ATGGGCGTATGCA	.	155.0	51.0	131.0	0.0	G|0.999;A|0.000	0	0	0	0	0
ADCY3	109	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25051028	25051029	+	Missense_Mutation	DNP	GA	GA	AC	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ADCY3-94	NM_004036	exon13	c.T2174G	p.L725R	CAGCTGAGCTGGA	.	142	82	92	1	.	0	0	0	0	0
