Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
SYNPO2L	79933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	75406654	75406654	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	TGTTCTCCAGATGGGCTCATC	0.652	36	47
F2	2147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	46760818	46760818	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	TCTTCAGAGCCCCTTTAACAA	0.478	51	95
DGKH	160851	hgsc.bcm.edu;broad.mit.edu	37	13	42763202	42763202	+	Silent	SNP	C	C	T			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	GCTCGAACAACTGCTGCAGGC	0.463	7	125
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577114	7577114	+	Missense_Mutation	SNP	C	C	A			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	AGGACAGGCACAAACACGCAC	0.552	52	11
YES1	7525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	756710	756710	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	GGACATGGTGACACTGTAGTG	0.453	115	183
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	197072215	197072215	+	Missense_Mutation	SNP	C	C	G			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	GTTTTGTAAGCTCTGTATTTA	0.343	95	202
POLR1A	25885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	86316951	86316951	+	Silent	SNP	G	G	A			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	TCACATGTGCGCCCTGGGACC	0.458	44	98
SLC9A4	389015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	103149082	103149082	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	GTCGAGGTGGACAGCTGACCA	0.502	13	23
RGPD4	285190	hgsc.bcm.edu;broad.mit.edu	37	2	108496508	108496508	+	Missense_Mutation	SNP	A	A	T			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	GATCACTTAAACGGCCTGCTT	0.453	18	326
ACTR3	10096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	114699855	114699855	+	Silent	SNP	C	C	T			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	ATACTGGAATCAATGCTATCT	0.328	55	78
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	ATAAGCATGACGACCTATGAT	0.393	34	71
LAMB2	3913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	49159715	49159715	+	Silent	SNP	G	G	A			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	CACCCGCCAGGTGCTGGATCT	0.597	34	71
TBC1D9	23158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	141578954	141578954	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	GACACCTTGGTCCACCAGTGC	0.502	96	162
GLRB	2743	hgsc.bcm.edu;broad.mit.edu	37	4	158065079	158065079	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	TTCTGGATCAACCCGGACGCG	0.488	12	189
CDC20B	166979	hgsc.bcm.edu;broad.mit.edu	37	5	54436230	54436230	+	Silent	SNP	G	G	A			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	GTTGTTTTAGGCATTTCTGAA	0.333	27	65
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	67575480	67575480	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	TTTGGCTGACGCTTTCAAACG	0.383	24	174
HLA-DRA	3122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	32410420	32410420	+	Missense_Mutation	SNP	C	C	A			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	GTGGACAAAGCCAACCTGGAA	0.493	80	147
PDE1C	5137	hgsc.bcm.edu;broad.mit.edu	37	7	31877484	31877484	+	Splice_Site	SNP	G	G	A			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	GCACACTTACGCTTCTGGCTG	0.428	91	265
KAL1	3730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	8555923	8555923	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	GATCACAGGCTCAATAGAAAT	0.468	19	25
USP51	158880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	55514658	55514658	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	TGGGTACTACATACGTGACAG	0.453	42	70
FRMD7	90167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	131216497	131216497	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	GTCTTCCAGAAAGCCTTGCAG	0.463	140	259
POC1A	25886	broad.mit.edu;ucsc.edu	37	3	52159164	52159164	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	AAATACTCCCCCGTTCTTGAA	0.433	29	74
BCOR	54880	broad.mit.edu;ucsc.edu	37	X	39923699	39923699	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	CCTGTCCACCCGGAGGGTGGG	0.607	29	64
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76854942	76854942	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	TCCTTCACCACCTCCCCGAGA	0.388	308	491
ATRX	546	hgsc.bcm.edu	37	X	76854944	76854944	+	Silent	SNP	T	T	G			TCGA-CS-4942-01A-01D-1468-08	TCGA-CS-4942-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ee5832e7-577c-4507-a4fd-a70646fabc24	f2b83686-8044-4e74-9554-8b4d3c40b2b2	CTTCACCACCTCCCCGAGATC	0.393	323	505
