Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
KMT2A	4297	hgsc.bcm.edu;broad.mit.edu	37	11	118380710	118380710	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	CTCCCCACTGATGCTTTGGCT	0.398	7	96
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	37678952	37678952	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	TTACAGTGACGCCCAGTACCC	0.408	35	143
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	96489363	96489363	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	TTGGCTCTTTGTTTGGATTCA	0.358	23	46
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	76349031	76349031	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	TTTGTAGGCAATCTTTGGCAG	0.413	42	37
MINK1	50488	hgsc.bcm.edu;ucsc.edu	37	17	4797861	4797861	+	Silent	SNP	G	G	T			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	GCAAGAGCTCGTTCACGATGT	0.607	5	21
KRT9	3857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	39725736	39725736	+	Missense_Mutation	SNP	T	T	A			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	CTGCTCATACTCCTGACGCAT	0.498	30	46
AGMAT	79814	hgsc.bcm.edu;broad.mit.edu	37	1	15904231	15904231	+	Silent	SNP	G	G	A			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	CTGGCGCATAGGCAGGATCCA	0.527	5	68
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	60314160	60314160	+	Missense_Mutation	SNP	G	G	A	rs143143349		TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	AATGCAGCACGTACACAATTA	0.308	42	21
LRRC7	57554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	70452024	70452024	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	CCTTGAGGACCTCTTATTGTC	0.328	25	21
FUBP1	8880	hgsc.bcm.edu;broad.mit.edu	37	1	78430845	78430845	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	TTTCCCGGTCCATCGCCATGA	0.408	9	131
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	G	T	rs121913254		TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	TACTCTTCTTGTCCAGCTGTA	0.458	87	49
DIEXF	27042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	210016932	210016932	+	Missense_Mutation	SNP	C	C	G			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	GAATTTTACCCACATCTGCGA	0.458	15	55
ANGPT4	51378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	861878	861878	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	GGCCCCAGAGCGCTGGATCTC	0.562	12	40
INO80B	83444	hgsc.bcm.edu;ucsc.edu	37	2	74682279	74682279	+	Silent	SNP	G	G	A			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	GCACCTCTGGGGCTATGGAGG	0.572	37	133
KCNH7	90134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	163693238	163693238	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	AATGATGGCACAGTTCTGCAC	0.423	18	60
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	190927295	190927295	+	Missense_Mutation	SNP	T	T	G			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	AACAGGTAAATATAAACACAG	0.323	40	82
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	ATAAGCATGACGACCTATGAT	0.393	33	66
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	13719099	13719099	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	GCCTCGGTGGTCATCCAGAGG	0.473	54	86
FNDC9	408263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	156770036	156770036	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	TTCCTCCCTCTGACCAAGATC	0.612	64	88
FAM50B	26240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	3850199	3850199	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	GTTCTCGGCGCATTACGACGC	0.647	12	19
C2	717	hgsc.bcm.edu;ucsc.edu	37	6	31913064	31913064	+	Missense_Mutation	SNP	T	T	G			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	GACTTTCACATCAATCTCTTC	0.592	50	109
STK38	11329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	36489539	36489539	+	Missense_Mutation	SNP	C	C	A			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	ATCTGCTTTACGGAGTATTTT	0.338	64	133
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	38980113	38980113	+	Silent	SNP	G	G	A			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	ATCTAAAATTGGCCATTGAAG	0.348	47	95
ATG5	9474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	106764041	106764041	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	GTTGGAATTCGTCCAAACCAC	0.378	73	151
RSPH4A	345895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	116938227	116938227	+	Silent	SNP	A	A	G			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	AGTCAGAAGGAAACACCTTTC	0.458	45	68
AOC1	26	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	150554515	150554515	+	Silent	SNP	C	C	T			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	CTGTGCTCTACGGCGGCTGGA	0.692	8	21
FAM83A	84985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	124219482	124219482	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	CGAGGAGTTCCGCCACCTCTA	0.672	11	15
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	139412203	139412203	+	Splice_Site	SNP	C	C	T			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	GGCCGACGCACCGGGCATGCA	0.667	9	67
BEND2	139105	hgsc.bcm.edu;broad.mit.edu	37	X	18221653	18221653	+	Missense_Mutation	SNP	G	G	T			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	AGATGACAAGGCTCTACCTGG	0.418	13	232
TAF9B	51616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	77394339	77394339	+	Splice_Site	SNP	C	C	T			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	CATTAACTTACGGAAAGCAAA	0.328	44	73
ARMCX1	51309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	100808652	100808652	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	ACGTGAATTGGGTGGTGTCCC	0.388	106	206
PCSK6	5046	broad.mit.edu;ucsc.edu	37	15	101929754	101929754	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	CAGCGCTGACGCAGATCCGTG	0.582	38	58
ERCC6L2	375748	broad.mit.edu;ucsc.edu	37	9	98774903	98774903	+	Missense_Mutation	SNP	G	G	C			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	CAGAAACTAAGAAATCACCTG	0.368	40	50
SERBP1	26135	broad.mit.edu;hgsc.bcm.edu	37	1	67895672	67895675	+	Splice_Site	DEL	TTCT	TTCT	-			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	CTGCTTTACCTTCTTTCTTAAGCG	0.632	36	106
APPL1	26060	broad.mit.edu;hgsc.bcm.edu	37	3	57302495	57302498	+	Frame_Shift_Del	DEL	AAAC	AAAC	-			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	agaactcaataaacaaaaacagat	0.314	18	42
NOTCH1	4851	broad.mit.edu;hgsc.bcm.edu	37	9	139413129	139413131	+	In_Frame_Del	DEL	TCA	TCA	-			TCGA-CS-5390-01A-02D-1468-08	TCGA-CS-5390-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0e64f0e-5a56-4e98-a5db-4d44bee595a9	43746417-c404-4b14-8a55-463e79f3a745	GCTGGCACAGTCATCAATGTTCT	0.631	13	27
