Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR51F2	119694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	4843405	4843405	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	TGCTGTTTCCATCTTCTACCT	0.478	27	49
CCDC82	79780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	96092275	96092275	+	Missense_Mutation	SNP	A	A	T			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	GTATAGTTTGAATTTAAAATG	0.343	32	81
OR8B4	283162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	124293908	124293908	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	ACTGTAGATCGAAGGGTTAAG	0.443	32	52
PYROXD1	79912	hgsc.bcm.edu;broad.mit.edu	37	12	21593340	21593340	+	Silent	SNP	A	A	G			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	TTCTCTTGGTAACAGCTTCTC	0.289	10	157
KRT6C	286887	hgsc.bcm.edu;broad.mit.edu	37	12	52865067	52865067	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	GTGGGTCTGCATCTGGGACAG	0.507	51	105
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	39883403	39883403	+	Silent	SNP	A	A	G			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	ACAACTGTCCATTCCATTACA	0.448	64	126
IGSF6	10261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	21658638	21658638	+	Missense_Mutation	SNP	G	G	T	rs1454374	byFrequency	TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	TTTTGCACCCGTCCAAGCACA	0.512	53	68
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577532	7577532	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	GGTGAGGATGGGCCTCCGGTT	0.577	40	17
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	11132435	11132435	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	GACGAAGGTCACCGCATGAAG	0.622	10	21
URI1	8725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	30503230	30503230	+	Missense_Mutation	SNP	G	G	A	rs140683632		TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	TATGTCCCTCGCAAATCCATC	0.408	51	167
GDAP2	54834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	118441728	118441728	+	Silent	SNP	C	C	A			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	GTTCAGGTACCACAGGCTCCC	0.438	64	128
OR2W3	343171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	248059264	248059264	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	GTGTGTGGCTATCTGCAAGCC	0.607	20	61
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	54880943	54880943	+	Silent	SNP	C	C	G			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	ACCTCATGCTCTGGATGGAGG	0.577	14	22
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	152474871	152474871	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	CGTTTCTGGACGCTGACGGTA	0.443	54	210
UBR3	130507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	170917865	170917865	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	TCCATGGAAAAATGCTTACAG	0.363	109	188
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	ATAAGCATGACGACCTATGAT	0.393	31	68
BCL6	604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	187449545	187449545	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	CTCCATCTGCAGGTACATAGC	0.537	20	51
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	85600267	85600267	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	GCGGCTGTTGCGCGGCAGGAG	0.582	26	35
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	160277114	160277114	+	Silent	SNP	G	G	A			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	GGAAACCGCCGGACTACAACG	0.612	10	26
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu	37	5	23526956	23526956	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	GGAGTGTGGGCGGGGCTTTAG	0.607	45	78
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	32039776	32039776	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	CCCGTCTTTGCCTCCACAGAG	0.592	10	12
PLEKHA8	84725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	30092391	30092391	+	Silent	SNP	C	C	T			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	AGGAAGAAATCCTAATGAAAA	0.308	21	106
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu	37	7	44805131	44805131	+	Missense_Mutation	SNP	C	C	A			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	CCCTTTGCCCCCCTGCAGCCC	0.687	30	13
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	87046828	87046828	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	CTGGTTCCTGTGGCCTGGGAG	0.428	21	43
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	109694416	109694416	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	TGAGGCAATGTCCACACCATT	0.483	67	48
FAM118B	79607	broad.mit.edu;ucsc.edu	37	11	126126563	126126563	+	Silent	SNP	C	C	G			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	TGGAGGCTGTCAAGCATAAAT	0.448	39	52
CSMD3	114788	broad.mit.edu;ucsc.edu	37	8	113304784	113304784	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	ATAGGTGGAGGATGGCTCCAC	0.403	59	243
KRT20	54474	broad.mit.edu;hgsc.bcm.edu	37	17	39034595	39034596	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-CS-5393-01A-01D-1468-08	TCGA-CS-5393-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddc229a3-8c45-4736-9cff-6495193c3c55	53327aaf-fa9c-44ed-8c21-1c557f76186e	GGTCTCCTCTAGAGTGTGCTCC	0.46	30	86
