Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
RAG2	5897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	36614246	36614246	+	Silent	SNP	G	G	A			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	GGACTCTTTGGGGAGTGTGTA	0.448	32	59
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	39454427	39454427	+	Missense_Mutation	SNP	C	C	G	rs148812741		TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	CTAGGTCGCTCTAGGCCGAGA	0.388	20	37
TMX1	81542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	51713855	51713855	+	Missense_Mutation	SNP	G	G	C			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	CAAGGACTAAGAAGGACTTCA	0.353	42	57
TP53	7157	hgsc.bcm.edu;ucsc.edu	37	17	7578208	7578208	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	CACCACACTATGTCGAAAAGT	0.542	13	38
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578550	7578550	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	GAGGGCAGGGGAGTACTGTAG	0.552	15	22
CASP14	23581	hgsc.bcm.edu;broad.mit.edu	37	19	15166067	15166067	+	Missense_Mutation	SNP	G	G	A	rs148526551		TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	TGCCTTGCACGTTTATTCCAC	0.547	4	50
WDR62	284403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	36572456	36572456	+	Missense_Mutation	SNP	A	A	T			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	CACTGGCAGAAAAACATCTTC	0.473	19	90
WARS2	10352	hgsc.bcm.edu;ucsc.edu	37	1	119575933	119575933	+	Silent	SNP	C	C	T	rs77497675	byFrequency	TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	GGTCTGATTTCGACATTTTGG	0.458	45	129
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	ATAAGCATGACGACCTATGAT	0.393	33	53
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	215823176	215823176	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	TAAACTGCTGATTCTAGAGTG	0.388	25	25
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	219895549	219895549	+	Silent	SNP	G	G	A			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	GCAGCTGGGCGCACTTGGCTG	0.637	9	30
FAM208A	23272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	56694986	56694986	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	CAGTGCTGGAGGGATTTTCTG	0.299	16	54
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	66201659	66201659	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	CCTGCAGGATGCATTAACCAG	0.403	45	85
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	126239329	126239329	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	CCAGAAGGGTATGATGTGTCT	0.532	35	54
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	154270897	154270897	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	TTGACTCTTTTGGTGTTGTCG	0.458	36	56
GRM4	2914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	33996059	33996059	+	Missense_Mutation	SNP	A	A	C			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	AGGATGATGTAGACTTTGGGC	0.607	56	80
RARRES2	5919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	150037192	150037192	+	Silent	SNP	A	A	G			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	CACTCACCCCATTGGGCCTGA	0.567	237	389
KCNU1	157855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	36694322	36694322	+	Silent	SNP	A	A	G			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	TTTATCTGCCAAAGATTCCCA	0.423	16	41
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	10106879	10106879	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	CTGCGGCAGCGGTTGGAGGAC	0.701	12	20
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	24753561	24753561	+	Missense_Mutation	SNP	T	T	A			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	ACTGCTAGGTTTTTTCCTTGC	0.393	33	66
DCAF8L1	139425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	27999088	27999088	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	CCACCGCATCGTGGACACATC	0.547	14	28
ZNF157	7712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	47272249	47272249	+	Silent	SNP	A	A	C			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	CTGAGAAGGCAACCCTCACGA	0.438	7	27
KCND1	3750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	48826090	48826090	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	ACCGACACGGCGATGAAGAAG	0.642	11	8
OPCML	4978	broad.mit.edu;ucsc.edu	37	11	132527046	132527046	+	Silent	SNP	C	C	T			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	AGCAGGTGTACGGACCTTCGT	0.502	20	61
IL17REL	400935	broad.mit.edu;ucsc.edu	37	22	50435799	50435799	+	Silent	SNP	G	G	A			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	CAGGCAGGGAGCTGTGACTTC	0.667	6	33
VPS13C	54832	broad.mit.edu;hgsc.bcm.edu	37	15	62302761	62302776	+	Frame_Shift_Del	DEL	CATGTAGAGTTTTGCA	CATGTAGAGTTTTGCA	-			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	CATAAGGATTCATGTAGAGTTTTGCAGAGGCTGATA	0.352	17	58
SMARCA4	6597	broad.mit.edu	37	19	11143993	11143993	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6667-01A-12D-2024-08	TCGA-CS-6667-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c14ddc3-acf0-4f96-bdb6-eb517d1da522	49ca5323-38a1-4786-b6aa-66de49b053a1	CCGAGCCCACCGCATCGGGCA	0.607	8	42
