Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ANO2	57101	hgsc.bcm.edu;broad.mit.edu	37	12	5860068	5860068	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	TACAGAAGATGGGATGAGGAA	0.348	4	71
TBK1	29110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	64891776	64891776	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	AGAGATGGAAGGGGTGGTTAA	0.299	59	54
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	117768410	117768410	+	Silent	SNP	G	G	A			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	GCCCATTCCCGGGACCCGAGG	0.701	43	68
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu	37	12	124401043	124401043	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	CAAGCAGCTAGAGATGTCCAT	0.453	14	192
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	29390775	29390775	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	AATGCAGACACGCAGGTAAGC	0.478	29	42
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	62302717	62302717	+	Missense_Mutation	SNP	C	C	A			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	TTCTATGTTGCAATCCAGTTT	0.393	55	120
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577532	7577532	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	GGTGAGGATGGGCCTCCGGTT	0.577	76	18
ADPRM	56985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	10614361	10614361	+	Missense_Mutation	SNP	G	G	C			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	CAAGCCTTTGGCACAGTTCAT	0.438	46	78
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	9069716	9069716	+	Silent	SNP	A	A	C			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	ACACGCCCTTAGTACTTCTGC	0.498	68	125
RDH8	50700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	10127828	10127828	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	CCAGCTGGACGTGTGCAGTGA	0.627	25	24
MTHFR	4524	hgsc.bcm.edu;broad.mit.edu	37	1	11854817	11854817	+	Missense_Mutation	SNP	G	G	T			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	TCCCACTCCTGGGTACGGTAG	0.582	11	191
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	27100207	27100207	+	Splice_Site	SNP	C	C	T			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	gcagcagcaACGGTGAGTAAA	0.577	10	65
KIFAP3	22920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	170003639	170003639	+	Splice_Site	SNP	T	T	A			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	TGAGAAAAGCTTTAAAGAAGA	0.284	29	39
RGS13	6003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	192627429	192627429	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	AATTGCCTCACGGTGGAGCAG	0.413	11	91
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	198677313	198677313	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	AAAGCAGATACTACTATTTGT	0.294	51	72
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	ATAAGCATGACGACCTATGAT	0.393	49	81
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	9476091	9476091	+	Missense_Mutation	SNP	C	C	A			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	AGCCCGAACTCTGAAGGAGAA	0.532	28	56
SRP72	6731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	57340227	57340227	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	CAGTTATACCGTTTGGAACGC	0.353	26	27
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	131940537	131940537	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	CTTATACAGGACCAGCAGGAA	0.333	18	45
MCHR2	84539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	100382335	100382335	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	AAAATATAGCACACCAAAATC	0.323	90	135
CPED1	79974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	120629721	120629721	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	ATTTTGCCCCCGACCCTTCTT	0.597	71	94
UBN2	254048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	138982568	138982568	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	TAAATTACCACGGAAATCTCA	0.418	26	49
GLDC	2731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	6644691	6644691	+	Splice_Site	SNP	C	C	T			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	TTCATCAATGCTCTAAAATTA	0.463	36	54
CTSV	1515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	99795313	99795313	+	Missense_Mutation	SNP	C	C	A			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	GCCATTCGAGCCCCATTCTGG	0.438	42	62
C12orf63	0	broad.mit.edu;ucsc.edu	37	12	97137849	97137849	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	CACTAAATATGCAAATCCATT	0.299	9	78
DUSP27	92235	broad.mit.edu;ucsc.edu	37	1	167097454	167097454	+	Missense_Mutation	SNP	C	C	A			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	TACAACGAGACCTCAAGTTCC	0.562	30	64
ZCCHC8	55596	broad.mit.edu;ucsc.edu	37	12	122958070	122958070	+	Missense_Mutation	SNP	G	G	C			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	TTGTTTTTCTGCTGGTTTCGG	0.373	30	51
FBN1	2200	broad.mit.edu;ucsc.edu	37	15	48795985	48795985	+	Splice_Site	SNP	T	T	C			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	ACCACATACCTGAATTCTGTG	0.483	40	72
PHC2	1912	broad.mit.edu;hgsc.bcm.edu	37	1	33797964	33797966	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	CCTGTGCATACTTCTTCTTGAGA	0.581	129	256
API5	8539	broad.mit.edu;hgsc.bcm.edu	37	11	43348086	43348087	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	GGTTTGTGACATATTTCTGTGA	0.376	70	164
GRAMD1B	57476	broad.mit.edu;hgsc.bcm.edu	37	11	123476150	123476153	+	Frame_Shift_Del	DEL	ACTA	ACTA	-			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	CCAACAGCACACTAACATCCACAG	0.534	67	136
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76814305	76814305	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DB-5275-01A-01D-1468-08	TCGA-DB-5275-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc50e0af-23d9-4528-b5ac-3974449bc1aa	12ee7643-7bc5-4051-baa7-d1f9a6245fa1	TAGAAATGATAAATAATCGTC	0.289	54	12
