Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
SHOC2	8036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	112745430	112745430	+	Missense_Mutation	SNP	C	C	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TCACAATCAACTTGAACACCT	0.368	9	97
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	10615122	10615122	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	ACCACAGCAACGCTGACCCTC	0.517	30	35
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	113852031	113852031	+	Missense_Mutation	SNP	A	A	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	CTCATCAATGAGTTGTGAGTA	0.512	25	34
MIPEP	4285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	24411745	24411745	+	Missense_Mutation	SNP	T	T	C			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	GCATGTCCCATTTCATGGAAA	0.438	60	207
FRY	10129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	32811758	32811758	+	Missense_Mutation	SNP	C	C	G			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TCCTCAAAAACCAGAAGCTCA	0.537	16	35
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	35923243	35923243	+	Splice_Site	SNP	A	A	G			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TTTTCTTTTTAGATTACTGTG	0.313	17	42
TRPC4	7223	hgsc.bcm.edu;broad.mit.edu	37	13	38320234	38320234	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TTTGCACTGCCGTGACAGCTC	0.423	20	317
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	30024898	30024898	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	GCGGACAAATCCTCTCTGCTT	0.433	47	111
ZNF592	9640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	85326612	85326612	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	GGATGCCACTCGATTCTTCGG	0.567	28	102
CIITA	4261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	10997737	10997737	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	CCTGACCTCCCGAGCAAACAT	0.592	33	131
ITGAL	3683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	30530025	30530025	+	Silent	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	ATGGCAGCAACGCCTCCCTGG	0.612	13	53
TRPV3	162514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	3458040	3458040	+	Silent	SNP	G	G	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TCTTTGTGGGGGTGATCTCCG	0.657	33	33
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu	37	17	48741328	48741328	+	Missense_Mutation	SNP	C	C	G			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TTATCACCAACTCAGTCAAAC	0.587	10	104
ATP8B3	148229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	1785266	1785266	+	Silent	SNP	G	G	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	GCCACGCACAGGGCGGTCCAG	0.607	4	17
SAFB2	9667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	5587939	5587939	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TGCCAGGCGCGTGCCTGGTGC	0.662	5	16
MAG	4099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	35802842	35802842	+	Silent	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	CAGAGAGCCCCAGCTTCTCGG	0.607	15	2
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	40520711	40520711	+	Missense_Mutation	SNP	C	C	G			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TCGCTATCATCTCACTCAACA	0.403	44	16
SLC17A7	57030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	49933845	49933845	+	Silent	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	CATAGGAGGGCGGGGGTGCAG	0.647	10	8
LRRC7	57554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	70504174	70504174	+	Silent	SNP	G	G	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	CCCCTAGTCCGTTTGAAGACA	0.478	76	12
NUP210L	91181	hgsc.bcm.edu;ucsc.edu	37	1	154061934	154061934	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	ACATGGCTGGGCACCAGCTGG	0.483	112	221
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	157491079	157491079	+	Missense_Mutation	SNP	G	G	A	rs142943534		TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	GCGAGACACCGGAACTGAAAG	0.498	13	63
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu	37	1	160093040	160093040	+	Missense_Mutation	SNP	G	G	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	GTTCTGGCTCGAGATGGGCCC	0.642	17	133
NCF2	4688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	183543623	183543623	+	Splice_Site	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TACGCTTACCCAGACACACTC	0.463	171	207
ESRRG	2104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	216824353	216824353	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	CTTCATGAAGCGGCAAGCCTG	0.448	30	163
CYP24A1	1591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	52779339	52779339	+	Missense_Mutation	SNP	A	A	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TAAATGTCACAAAGGAAATCT	0.463	53	57
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu	37	22	38323452	38323452	+	Silent	SNP	G	G	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	ACTCGGAGCCGCCCTCGGCCA	0.687	13	19
REG3G	130120	hgsc.bcm.edu;broad.mit.edu	37	2	79253917	79253917	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TCCCCCTGCTATGCCTTGTTT	0.542	14	26
SPOPL	339745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	139308482	139308482	+	Silent	SNP	G	G	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	GGTGCCTGAGGGTAAACCCAA	0.378	35	174
ITGA6	3655	hgsc.bcm.edu;ucsc.edu	37	2	173366600	173366600	+	Missense_Mutation	SNP	A	A	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	CTTACTTCTGATGCATAGTAT	0.383	22	100
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	ATAAGCATGACGACCTATGAT	0.393	65	71
SUMF1	285362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	4491010	4491010	+	Silent	SNP	G	G	A	rs148557574		TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	CAAAGGAGTCGCCAAACTTCT	0.403	114	163
RBM6	10180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	50099412	50099412	+	Silent	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TCTATGTGCCCCAGGATCCTG	0.438	20	47
MCCC1	56922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	182759530	182759530	+	Silent	SNP	T	T	C			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TCTTCTCTCCTGCTGCAATCT	0.403	92	129
LRCH3	84859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	197559180	197559180	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	GTAGTAACAAACGGCGGAGGT	0.408	18	70
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	123192264	123192264	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	GGAAAAGTCCGTGTGCACCCC	0.438	52	147
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	67589138	67589138	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	CAGGAAAGGGGGAAATAACAA	0.308	41	74
PCDHB3	56132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140481839	140481839	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	CGCCACAGACCGTGGCTCCCC	0.672	21	67
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140711827	140711827	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TGAGCAGTTCCGGGACATGCA	0.587	76	288
GRPEL2	134266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	148727842	148727842	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TAGGGGATGGCCGCTTCCATT	0.517	31	114
NEDD9	4739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	11190997	11190997	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	CTGGAGAAAGACAATCGGTTG	0.547	62	64
PAQR8	85315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	52268301	52268301	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TGGGCCTTTGCCGAGGCTGAG	0.572	17	71
SIM1	6492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	100841631	100841631	+	Silent	SNP	G	G	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	GTCTGTAGGCGCACGATGCGT	0.617	21	75
JAK2	3717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	5090496	5090496	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TGGAAGTTTACGAGACTATCT	0.313	111	22
CKS2	1164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	91926227	91926227	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	AAGCAGATCTACTACTCGGAC	0.642	16	20
RPL7A	6130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	136217156	136217156	+	Silent	SNP	C	C	T	rs142456845	by1000genomes	TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TGATTGCACACGACGTGGATC	0.522	9	40
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu	37	X	140995929	140995929	+	Silent	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	AAAAGGTGGACGAGTTGGCGC	0.488	12	200
SART1	9092	broad.mit.edu;ucsc.edu	37	11	65733982	65733982	+	Silent	SNP	A	A	G			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	CCCTGAGCACAGTGGGGCCCC	0.677	5	15
TPST2	8459	broad.mit.edu;ucsc.edu	37	22	26937282	26937282	+	Silent	SNP	G	G	A	rs146078388	byFrequency	TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TGGCCAGCACGCGCGGGATGA	0.706	7	25
SNHG14	104472715	broad.mit.edu;ucsc.edu	37	15	25444675	25444675	+	RNA	SNP	C	C	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	ACGCTGAGGCCCAGCCTAGGT	0.493	75	231
GPX6	257202	broad.mit.edu;ucsc.edu	37	6	28472105	28472105	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	ACTCCAGGATGTCTGACTTGA	0.502	60	74
ENSA	2029	broad.mit.edu;ucsc.edu	37	1	150599964	150599964	+	Silent	SNP	G	G	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	GTCTCTTCATGAGGAAGTCGG	0.493	90	83
FSIP1	161835	broad.mit.edu;ucsc.edu	37	15	39910063	39910063	+	Silent	SNP	C	C	T	rs144527032	byFrequency	TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	CAAGAGTCTTCGACATAAAAT	0.398	86	52
NEGR1	257194	broad.mit.edu;ucsc.edu	37	1	72748110	72748110	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	GCAGCACAGGCTGAGGAGCAC	0.627	5	17
SLA	6503	broad.mit.edu;ucsc.edu	37	8	134050855	134050855	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TTCTTCTTTCGATCAAAGGAG	0.498	67	210
ZCCHC9	84240	broad.mit.edu;hgsc.bcm.edu	37	5	80607067	80607070	+	Frame_Shift_Del	DEL	AAAG	AAAG	-			TCGA-DB-5279-01A-01D-1468-08	TCGA-DB-5279-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	277aa1d8-ce6a-4e32-a267-73c33665ab97	1761720c-3e2f-4ce7-8551-b859117e150f	TGGAACATTTAAAGAAAGATTGCC	0.417	190	348
