Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	71010063	71010063	+	Missense_Mutation	SNP	G	G	A	rs148336562	by1000genomes	TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	AAAGTTTCTCGCCCTGGATCT	0.547	20	203
OR8J3	81168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55904857	55904857	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	AGCCAGCATCATTACCTCCGA	0.478	12	91
FTH1	2495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	61732945	61732945	+	Missense_Mutation	SNP	C	C	G			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	AAGTATTTGGCAAAGTTCTTC	0.458	31	29
PTPRCAP	5790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	67203469	67203469	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	GCCACCATCCGCGACGTGGTC	0.657	13	47
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	117768538	117768538	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	GTCCCATCACCTGTAAAGGTG	0.632	15	28
FERMT2	10979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	53385874	53385874	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	ACAGCTTTGAAGACTCTATCA	0.393	26	37
CATSPERB	79820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	92076966	92076966	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	CACCATTGTCGTAACAAAGCA	0.373	8	25
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	89382124	89382124	+	Missense_Mutation	SNP	C	C	G			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	CAGTGCCTATCAGGACAAGGT	0.617	34	117
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	89382142	89382142	+	Missense_Mutation	SNP	C	C	A			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	GGTCTCACTGCCCAACTACCC	0.612	39	119
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T	rs11540652		TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	GATGGGCCTCCGGTTCATGCC	0.572	52	8
ALPK2	115701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	56203630	56203630	+	Silent	SNP	G	G	A	rs76266246	byFrequency	TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	TGAGACCACCGTCTGATGCCT	0.498	57	77
CPXM1	56265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	2775986	2775986	+	Silent	SNP	G	G	A			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	ATTCATTCTCGTGAGGGAACT	0.567	19	21
HADHA	3030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	26437420	26437420	+	Silent	SNP	C	C	T			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	TCATGGCATACGCTGTCAATT	0.338	5	10
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	ATAAGCATGACGACCTATGAT	0.393	9	21
SLC19A3	80704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	228563995	228563995	+	Missense_Mutation	SNP	C	C	T	rs147502239	byFrequency	TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	GCCAGCGTGACGCTCCTGCAG	0.592	69	103
SCLY	51540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	239002577	239002577	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	CCTGGAAGAGAGGCTGGAAGT	0.672	11	10
CNTN4	152330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	2924865	2924865	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	ATAGAAGTGCAGTTCCCAGAA	0.408	18	22
LIFR	3977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	38523540	38523540	+	Missense_Mutation	SNP	C	C	G			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	GAGCTCCATACTCTCTTTACG	0.343	17	36
RAB23	51715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	57058690	57058690	+	Missense_Mutation	SNP	T	T	A			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	AGCTATTTGTTGTTTGAGTTT	0.318	9	6
PLG	5340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	161173247	161173247	+	Silent	SNP	C	C	T			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	TCCAATCCACCGAACTCTGTG	0.488	23	32
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	98497374	98497374	+	Missense_Mutation	SNP	G	G	T			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	TGCCATTCAGGTGTCTGCACA	0.438	15	28
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	128482972	128482972	+	Silent	SNP	G	G	A			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	CACCAGGGGCGGGCCGCTACA	0.592	20	34
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	8633423	8633423	+	Silent	SNP	G	G	A			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	GTTGTATTCTGAGAACTGATC	0.428	24	15
KIF24	347240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	34256165	34256165	+	Missense_Mutation	SNP	T	T	C	rs36062910		TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	TAGGTCTGCCTCCCTGCTGGG	0.572	17	24
TPM2	7169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	35685321	35685321	+	Missense_Mutation	SNP	C	C	A			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	TCCAGGATCACCAGCTTCCTG	0.627	13	27
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu	37	9	84609437	84609437	+	Missense_Mutation	SNP	G	G	T			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	AACCTTTTCAGAAAATGGATG	0.443	7	9
EIF1AX	1964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	20156713	20156713	+	Missense_Mutation	SNP	C	C	A			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	CTCATTCTTACCCCTGCGTCT	0.308	13	2
ATRX	546	hgsc.bcm.edu;broad.mit.edu	37	X	76855199	76855199	+	Splice_Site	SNP	A	A	G			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	TATTCGATTTACTTTGTATAA	0.348	6	1
CSMD2	114784	broad.mit.edu;ucsc.edu	37	1	34034977	34034977	+	Missense_Mutation	SNP	G	G	A	rs143459383		TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	CACTTACCAAGGCAGCGGACT	0.502	16	41
DIO2	1734	broad.mit.edu;ucsc.edu	37	14	80669148	80669148	+	Missense_Mutation	SNP	G	G	C			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	GCAATTTTCTGTCTCTGCACA	0.507	23	25
OR2M3	127062	broad.mit.edu;hgsc.bcm.edu	37	1	248366912	248366912	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DB-A4XB-01A-11D-A26M-08	TCGA-DB-A4XB-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aaf7e22-1669-4db1-b137-944ff01ddbdc	456815aa-07ae-46de-bf95-78b15569f6b1	TCTGTGACTTCCCCTCCCTAC	0.423	42	143
