Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MAPK8	5599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	49618135	49618135	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	GAGCTAGATCATGAAAGAATG	0.398	17	152
PNLIPRP1	5407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	118357417	118357417	+	Missense_Mutation	SNP	G	G	T			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	TGACTTTGTTGATGTGATTCA	0.483	26	75
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	12291381	12291381	+	Missense_Mutation	SNP	T	T	A			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	TTGCTGCTGTTTATCAATCCA	0.423	75	150
TUBA3C	7278	hgsc.bcm.edu;broad.mit.edu	37	13	19752464	19752464	+	Silent	SNP	C	C	T	rs142499533		TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	AATTATTGGCCGCATCTTCCT	0.522	9	119
TDP1	55775	hgsc.bcm.edu;broad.mit.edu	37	14	90455299	90455299	+	Silent	SNP	C	C	T			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	CCTGGCCTGTCGTAGGTCAGT	0.448	4	54
RPS2	6187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	2014319	2014319	+	Missense_Mutation	SNP	G	G	C			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	CCAGGGACTTGATCTTCATGT	0.602	32	61
C16orf45	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	15661873	15661873	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	AGGACATCATGGACTTGAAGC	0.557	15	19
SGSM2	9905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	2282481	2282481	+	Silent	SNP	C	C	A			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	TCACTGACATCATCAAGTTTT	0.582	30	81
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577559	7577559	+	Missense_Mutation	SNP	G	G	T	rs28934573		TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	GCCCATGCAGGAACTGTTACA	0.572	34	56
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	56393488	56393488	+	Missense_Mutation	SNP	T	T	C			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	CTCAAAGGGGTTGTAGCTGTT	0.522	7	76
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	2891077	2891077	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	CCAAGCCTATGTGGACAGTAA	0.547	96	116
TTR	7276	hgsc.bcm.edu;broad.mit.edu	37	18	29172888	29172888	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	GTCCTCTGATGGTCAAAGTTC	0.483	7	79
HIPK1	204851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	114510515	114510515	+	Missense_Mutation	SNP	C	C	A			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	CAGACAACAACAATCCAGTTC	0.478	21	64
ABCB10	23456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	229683292	229683292	+	Missense_Mutation	SNP	T	T	C			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	CCTGAGCCCATCTGAGAGGTT	0.567	29	72
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	ATAAGCATGACGACCTATGAT	0.393	39	35
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	77617553	77617553	+	Silent	SNP	C	C	T			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	TCCAGTTGTGCTGACTCCCAC	0.468	40	76
ARHGAP31	57514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	119132892	119132892	+	Missense_Mutation	SNP	T	T	G			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	GCCTTGTGGCTCCTTCCCTGC	0.602	50	153
GABRA6	2559	hgsc.bcm.edu;broad.mit.edu	37	5	161119014	161119014	+	Silent	SNP	A	A	T			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	CAAAAGTGTCATATGCCACTG	0.408	8	99
PDLIM7	9260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	176918075	176918075	+	Silent	SNP	C	C	T	rs145886743		TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	TCCCCGGCCGCGGCCGCCAGT	0.667	9	16
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	42007295	42007295	+	Missense_Mutation	SNP	T	T	C			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	TAGTTTTACGTGCTCCATCCA	0.498	85	251
SLC7A2	6542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	17409358	17409358	+	Silent	SNP	C	C	A			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	ATTTTGGGGTCTCTGCAGCTT	0.438	43	96
GDAP1	54332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	75272416	75272416	+	Missense_Mutation	SNP	C	C	G			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	CATGTATTACCCACGGGTACA	0.403	53	34
ZNF707	286075	hgsc.bcm.edu;broad.mit.edu	37	8	144776021	144776021	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	GCCAAGCCCACGGCTTTCCCG	0.647	7	88
NLGN3	54413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	70367670	70367670	+	Missense_Mutation	SNP	T	T	A			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	AGCCTGTGCCTCACCCTGTGG	0.662	16	22
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	105178375	105178375	+	Missense_Mutation	SNP	T	T	A			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	TTTCTGCCAATCACTCATCTC	0.433	44	66
MAGEA12	4111	hgsc.bcm.edu;broad.mit.edu	37	X	151900225	151900225	+	Missense_Mutation	SNP	G	G	T			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	CGATCTGATTGTCGCCCAGCA	0.577	16	239
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7579592	7579592	+	Splice_Site	DEL	T	T	-			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	CAAGGGGGACTGTAGATGGGT	0.597	170	212
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76944338	76944339	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-DB-A4XE-01A-11D-A27K-08	TCGA-DB-A4XE-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6998fda2-aab1-4175-8606-2df81e5e7114	d4e7fe64-d8f5-4696-8470-f6fb2635b838	GCAATGAAGGGTGTCTATAAAT	0.391	31	90
