Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
NLRP14	338323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	7064302	7064302	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	TAAGAGGTGGGCCATGAAAGT	0.428	27	209
NCKAP1L	3071	hgsc.bcm.edu;ucsc.edu	37	12	54914539	54914539	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	TGCCATGTTGCGTTATGCCAT	0.463	231	495
LGR5	8549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	71978453	71978453	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	GTGCCATCACCAGCTTATCCA	0.458	95	187
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	90631838	90631838	+	Missense_Mutation	SNP	C	C	T	rs121913503		TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	ATGGGCGTGCCTGCCAATGGT	0.632	51	82
KRT36	8689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	39642800	39642800	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	CTTGCATGCCGTGGCACAAGG	0.577	5	27
CDH20	28316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	59174700	59174700	+	Silent	SNP	G	G	A			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	TCAATGCAGAGATGAAATATA	0.433	15	144
SERPINB3	6317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	61323264	61323264	+	Missense_Mutation	SNP	A	A	C			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	TGTCCATTCCATCAATTTCTC	0.378	29	131
GBP5	115362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	89728016	89728016	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	ATCATTTGCTCGTTCTGCCTT	0.463	66	80
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	233344354	233344354	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	CTGGCTTTGGCCCCTGTATCA	0.423	14	93
PCSK2	5126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	17434533	17434533	+	Silent	SNP	C	C	T			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	CCCTGTACGACGAGAGCTGCT	0.597	26	152
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu	37	22	21115635	21115635	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	AGTAGCAGAACATTACCTGGA	0.368	11	127
SPECC1L	23384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	24717648	24717648	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	TATTATGGCTCACCAGCCGAC	0.438	86	187
C2orf71	0	hgsc.bcm.edu;broad.mit.edu	37	2	29294007	29294007	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	GTGGTGGGTGGGCTTAGCACC	0.687	41	91
RIF1	55183	hgsc.bcm.edu;broad.mit.edu	37	2	152293371	152293371	+	Missense_Mutation	SNP	C	C	A			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	GCCCCGGGAACTCCCCGAATG	0.418	11	120
CHRNA1	1134	hgsc.bcm.edu;broad.mit.edu	37	2	175614763	175614763	+	Missense_Mutation	SNP	C	C	T	rs137852804		TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	GAGGCAATGACGAACACCATG	0.537	9	148
PLXNB1	5364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	48461210	48461210	+	Missense_Mutation	SNP	G	G	C			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	ATGGCCCCTGGGAAAGTGGTG	0.701	7	14
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu	37	5	37008732	37008732	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	CAGGTATTCTCAAGATATGAA	0.274	12	224
C5orf34	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	43506030	43506030	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	AGGATATTTCCATTCCTCTGG	0.408	22	269
ADRB2	154	hgsc.bcm.edu;broad.mit.edu	37	5	148206922	148206922	+	Silent	SNP	C	C	T			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	GGTACCGGGCCACCCACCAGG	0.537	20	288
GRM1	2911	hgsc.bcm.edu;broad.mit.edu	37	6	146720659	146720659	+	Silent	SNP	G	G	C			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	TGGCTCTGGGGTGCATGTTCA	0.488	9	128
RALYL	138046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	85774590	85774590	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	CCGCTGAAGCGTCCCAGAGTG	0.507	7	49
KLF4	9314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	110249405	110249405	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	GTCCTTTTCCGGGGCCACGAT	0.587	88	177
CHMP1A	5119	broad.mit.edu;ucsc.edu	37	16	89715806	89715806	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	ACTGCGTCTACGCGGGACGCC	0.597	70	151
CATSPER1	117144	broad.mit.edu;ucsc.edu	37	11	65790440	65790440	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	ATCATTTCCCGGAAGCCCTGA	0.557	69	115
CIC	23152	broad.mit.edu	37	19	42797299	42797300	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	TGCCCCAGAGTCTGAGCTTGAG	0.718	9	7
IDH2	3418	hgsc.bcm.edu	37	15	90628591	90628591	+	Silent	SNP	G	G	A			TCGA-DH-5141-01A-01D-1468-08	TCGA-DH-5141-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b77c396b-3f9c-4f1a-864e-f92793906b9d	8ab5bff0-41b4-493c-9626-d706d1c6aa38	AGACCAGGACGGACGTCATCA	0.642	6	6
