Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	16883005	16883005	+	Silent	SNP	C	C	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	AACCACAAAACGTTCCAGCCA	0.363	17	110
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	26243813	26243813	+	Missense_Mutation	SNP	A	A	G			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	GATATTGACGAAGAGATTGAA	0.318	21	287
PSD	5662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	104173754	104173754	+	Missense_Mutation	SNP	A	A	C			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	AGGCAGCTCAAAGGTGAAGAA	0.652	11	117
GAS2	2620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	22747932	22747932	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	TCCTGGTGCCGAGATTTAGGG	0.398	15	150
OR1S1	219959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	57982589	57982589	+	Missense_Mutation	SNP	A	A	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	CGTCATTGACAATTTGCTCTT	0.453	176	262
OAF	220323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	120097624	120097624	+	Missense_Mutation	SNP	C	C	G			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	CCTGCTGAGCCCCCATCTCCA	0.642	54	78
LST3	338821	hgsc.bcm.edu;ucsc.edu	37	12	21205042	21205042	+	Silent	SNP	A	A	C			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	ATAGTCCAGTAAGATCTCATG	0.388	25	127
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	43925953	43925953	+	Missense_Mutation	SNP	T	T	C			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	GCCTTCATTATAGGTTCTAAG	0.343	13	154
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	TCGGATAAGATGCTGAGGAGG	0.562	75	13
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	10309482	10309482	+	Missense_Mutation	SNP	C	C	G			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	AGAAGTCCAGCTTTGAAGAAA	0.403	50	82
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	33482401	33482401	+	Silent	SNP	C	C	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	TGGCTGTCTGCAACCTGCTCC	0.552	25	211
GAS2L2	246176	hgsc.bcm.edu;broad.mit.edu	37	17	34072135	34072135	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	CCTGGGGATTCGTGAAGGCTG	0.632	18	285
AMY2B	280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	104115689	104115689	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	TTCTAGGTTCGTATTTATGTG	0.368	148	856
MUC1	4582	hgsc.bcm.edu;broad.mit.edu	37	1	155160204	155160204	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	TCACCGCTGACGTCTGAGATC	0.577	7	78
AIM2	9447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	159035847	159035847	+	Silent	SNP	G	G	A	rs148686373		TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	CACGTGAGGCGCTATTTACCT	0.368	34	343
SIRPD	128646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	1517834	1517834	+	Missense_Mutation	SNP	G	G	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	CAGCAGCAGGGTTGGACGAAA	0.607	44	160
RTDR1	27156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	23401832	23401832	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	GCGCTATGGTCATGGGGGAGT	0.657	66	221
PTPN18	26469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	131116491	131116491	+	Missense_Mutation	SNP	G	G	A	rs11892325	byFrequency	TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	GTGCTCCACCGTGGCCGGCAG	0.627	62	145
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu	37	2	141528521	141528521	+	Missense_Mutation	SNP	G	G	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	AGTTTCAGATGTTGGTAAACA	0.353	13	228
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	152342397	152342397	+	Silent	SNP	C	C	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	CCTTGAAGGACACCTCATCTG	0.458	67	134
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	ATAAGCATGACGACCTATGAT	0.393	41	72
C2orf62	0	hgsc.bcm.edu;broad.mit.edu	37	2	219232561	219232561	+	Silent	SNP	C	C	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	TGGTCACCTTCGCCGCCGAGT	0.701	6	67
CCDC158	339965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	77244544	77244544	+	Missense_Mutation	SNP	A	A	G			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	TGTTGTTTCTATTGGCGGAGA	0.353	35	389
CCNG2	901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	78081991	78081991	+	Nonsense_Mutation	SNP	A	A	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	TAGTCAGTGTAAATGTACTGC	0.363	92	155
ZNF713	349075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	56006946	56006946	+	Silent	SNP	A	A	C			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	ATCTGAACTCAAACCTTATGC	0.368	36	146
OR13C2	392376	hgsc.bcm.edu;broad.mit.edu	37	9	107367614	107367614	+	Missense_Mutation	SNP	C	C	A			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	AACATCTGCACTGCACAGCCA	0.522	26	273
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	131337005	131337005	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	GGAGAAGATGCGAGAAAAAGG	0.468	53	98
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	140850187	140850187	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	GGAGAACCGCCGCGCCTTCCT	0.642	10	27
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76890086	76890086	+	Splice_Site	SNP	T	T	C			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	AGCTCTTACCTGTAAAGTCTT	0.393	85	29
DNAH11	8701	broad.mit.edu;ucsc.edu	37	7	21678576	21678576	+	Missense_Mutation	SNP	G	G	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	TTGTGAAAAAGCTCTCGCTGA	0.403	70	166
TRPM6	140803	broad.mit.edu;ucsc.edu	37	9	77435280	77435280	+	Silent	SNP	A	A	G			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	ACTGTTTAAGACTAAAGTTGA	0.413	38	113
RHAG	6005	broad.mit.edu;ucsc.edu	37	6	49604490	49604490	+	Silent	SNP	C	C	A			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	TGGCAATTTCCAGGACTATAG	0.443	59	144
SNX17	9784	broad.mit.edu;ucsc.edu	37	2	27599364	27599364	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	TGATGCCACCCGGGAGTCTAT	0.572	80	276
SMCO4	56935	broad.mit.edu;ucsc.edu	37	11	93212240	93212240	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	CACGACCACGGCCAGCGTGGG	0.652	10	95
RMI1	80010	broad.mit.edu;ucsc.edu	37	9	86616940	86616940	+	Missense_Mutation	SNP	C	C	G			TCGA-DH-5142-01A-01D-1468-08	TCGA-DH-5142-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a80ae1c-948a-4a98-b0c2-f81ab2415083	25f1462b-2671-4f5d-85e0-9539594b53e4	AAATGCCGATCGAAGTATAGA	0.343	16	103
