Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
PPIF	10105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	81113478	81113478	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	ATGGCAAGCATGTTGTGTTCG	0.502	46	155
CTR9	9646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	10783517	10783517	+	Silent	SNP	C	C	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	AAAATGGTGTCCAGCTTCTTT	0.343	12	67
SYTL2	54843	hgsc.bcm.edu;ucsc.edu	37	11	85436182	85436182	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	GGGCTACATACTGGCTGTACT	0.463	23	94
BORA	79866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	73303185	73303185	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	AATCTCCATGAACAAACTCTC	0.328	67	328
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	105413659	105413659	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	ATCCACCTGGCCAGCCTGGAC	0.607	90	259
TP53	7157	hgsc.bcm.edu;broad.mit.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	GCACAAACACGCACCTCAAAG	0.542	19	20
SOGA2	23255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	8825636	8825636	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	CCATCGAGAAGGTGCAGGCCA	0.602	9	26
SERPINB12	89777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	61225658	61225658	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	AACAAACAAAAAGTGCTGGCT	0.463	25	84
ADC	113451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	33560160	33560160	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	TTTCACATTGGCAGTGGCTGT	0.587	26	103
COL24A1	255631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	86590808	86590808	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	ATTAGTAATTGTATCTTGTTT	0.348	16	66
C1orf65	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	223568185	223568185	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	AACAAAGTTTCCAGCGGTCCC	0.607	15	64
KANSL3	55683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	97267954	97267954	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	GGGCTTCCCACCAGGAGTGGC	0.617	8	19
FASTKD1	79675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	170428527	170428527	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	AGGAAAACAGGTGTTTTTTTC	0.373	10	50
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	21752212	21752212	+	Silent	SNP	G	G	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	CCCCGATGTCGAAAGCCTGGG	0.463	16	94
PLCXD3	345557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	41381990	41381990	+	Silent	SNP	G	G	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	TAGCTTTGGGGGTCAGCACCA	0.463	41	153
WWC1	23286	hgsc.bcm.edu;broad.mit.edu	37	5	167858267	167858267	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	GAATATCCGCGTGGCTGTCCT	0.532	7	134
HIST1H1C	3006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	26056346	26056346	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	GAGTTTAAAGGAGCCAGAAGC	0.527	48	177
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	4259754	4259754	+	Silent	SNP	G	G	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	TGAGCAAGGTGGTGACCGTGG	0.567	22	134
RADIL	55698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	4855893	4855893	+	Silent	SNP	G	G	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	GCAGTGTCCCGGAGAAGAAGA	0.657	18	54
GLIS3	169792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	3828287	3828287	+	Silent	SNP	G	G	C			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	CTTCGGTGTAGACAGAGGAGA	0.562	11	30
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu	37	X	107840717	107840717	+	Silent	SNP	T	T	C	rs143442986		TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	TGGGTTCCCCTGGAGCTCCAG	0.537	6	100
IGSF10	285313	broad.mit.edu;ucsc.edu	37	3	151163027	151163027	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	AGCAATTTCTGAGTATGGTTT	0.438	21	193
SLC4A4	8671	broad.mit.edu;ucsc.edu	37	4	72121038	72121038	+	Silent	SNP	A	A	C			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	GGAAAAGGAGAGAATCTCTGA	0.448	6	131
IDH1	3417	broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	ATAAGCATGACGACCTATGAT	0.393	25	75
ZC3H12B	340554	broad.mit.edu;ucsc.edu	37	X	64719804	64719804	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	CACGGCCCAAGCCTTGAAAAT	0.443	65	287
LY9	4063	broad.mit.edu;ucsc.edu	37	1	160783602	160783602	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	TACCGTCTCCCGAACACCATG	0.572	65	279
BTNL8	79908	broad.mit.edu;ucsc.edu	37	5	180338425	180338425	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	CTGGTTCCCCCGGCCCACAGC	0.527	80	374
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76939056	76939060	+	Frame_Shift_Del	DEL	ATTTA	ATTTA	-			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	TTGAAGAAATATTTAATTTTACAGA	0.351	75	355
