Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
YME1L1	10730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	27411836	27411836	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	AGATTCAATTCTCTTCCCACC	0.348	32	23
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	43595972	43595972	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CCAGGCAGCCGGCACGCCCTT	0.627	26	7
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	105803313	105803313	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CCTGGGGGGCCTGGGACAGTG	0.572	20	7
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	63064782	63064782	+	Nonsense_Mutation	SNP	C	C	T	rs111381363		TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CAGGTTTGGGCGAAGATTTAT	0.398	42	68
DPP3	10072	hgsc.bcm.edu;ucsc.edu	37	11	66276620	66276620	+	Silent	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CTGAGCGTTTCCCAGAGGATG	0.602	20	37
GAB2	9846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	77931439	77931439	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CTCTTCTTAGGGGCAGGACTG	0.577	30	39
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	113860240	113860240	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CGAGAAGAGCCCGAGGGACAG	0.637	38	62
OR6M1	390261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	123676254	123676254	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CGGCCACCTTGTCATAATCCA	0.488	29	54
GDF3	9573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	7843233	7843233	+	Silent	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TGGCAGACAGGTTAAAGTAGA	0.478	20	52
DPPA3	359787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	7867929	7867929	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GAAGATGAGTGGCTTTACAGC	0.478	13	25
STAT6	6778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	57501513	57501513	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GCGTCGGAGCCGACCAGGAAC	0.602	11	37
UBL7	84993	hgsc.bcm.edu;broad.mit.edu	37	15	74751068	74751068	+	Silent	SNP	A	A	G			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GTTTGCCAGCAATAAGCTGCT	0.502	8	132
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	81181824	81181824	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GTGGAGTGGACGGAGTGGTTC	0.483	26	56
SLCO3A1	28232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	92706193	92706193	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	AACTATAAACGCTACATCAAA	0.547	28	36
SLC12A3	6559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	56928468	56928468	+	Silent	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TTCCCTATCTCCTTGGCCGCA	0.557	9	9
NUDT7	283927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	77775636	77775636	+	Missense_Mutation	SNP	G	G	A	rs35294368		TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CTTGGTCACCGTTTTATTAAT	0.473	24	43
CDH13	1012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	83250986	83250986	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GTCCAAGTTCCGGCTCACTGG	0.463	23	40
OVCA2	124641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	1946242	1946242	+	Silent	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	ATGTTTTTGGGGACACTGACA	0.547	30	53
RANGRF	29098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	8192897	8192897	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CTTACCTTCAATCAGCCCCCG	0.567	19	42
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	17721591	17721591	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GTGGACAGCAGTGCGCAGACT	0.547	17	67
FAM83G	644815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	18881610	18881610	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TGGTGCTGGGCGCTGGCCTGG	0.642	7	10
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	21402283	21402283	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	ATTCTGAGATACGTTAACCCT	0.383	24	67
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	21402284	21402284	+	Silent	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TTCTGAGATACGTTAACCCTG	0.383	25	67
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	43496145	43496145	+	Silent	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CCACTTCATTGGGCTGAGTGC	0.473	9	34
LRRC4B	94030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	51020955	51020955	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GCTGTAGTGCGCCTTGAAGGC	0.692	7	13
KLK1	3816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	51323240	51323240	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TTTGCACTCATCATTAGGCAG	0.547	12	30
KLK15	55554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	51330300	51330300	+	Silent	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	ACATGATGTCGTTGCGGTGGC	0.687	38	52
LILRA2	11027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	55086781	55086781	+	Silent	SNP	G	G	A	rs144206436		TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CCCCCGGGGAGAGCCTGACCC	0.577	37	62
PTPRH	5794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	55713502	55713502	+	Missense_Mutation	SNP	C	C	T	rs147691392	byFrequency	TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TACAAACACCCGGGTTCAAGT	0.542	45	67
SRSF11	9295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	70687521	70687521	+	Splice_Site	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CTTCCCGCCGGAGTGAGTATC	0.587	11	47
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	94486867	94486867	+	Silent	SNP	G	G	A	rs61750159		TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CATACTCCTCGGGGCTCCTGT	0.557	47	95
F5	2153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	169512193	169512193	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	AGGTTCTAAACGATCATGCAT	0.403	86	171
SLC35F3	148641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	234041367	234041367	+	Missense_Mutation	SNP	C	C	T	rs146928346		TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GTGGACGAGGCGATTAAGGAG	0.647	21	45
OR14C36	127066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	248512354	248512354	+	Missense_Mutation	SNP	C	C	T	rs145207343		TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	ATTTCTAAGGCGGGATGTGTA	0.473	22	31
PROKR2	128674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	5283062	5283062	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	AATCTGCTCCGTCTGGAACCC	0.607	6	24
ITCH	83737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	33068913	33068913	+	Silent	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TGTACTTCTCCGTTGACAAAG	0.313	33	71
NDUFAF7	55471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	37468832	37468832	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TAAAGAGAAGGTCCCGTTAGA	0.423	16	27
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	61468710	61468710	+	Silent	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GTAACTCTGACGAAACATCAA	0.328	14	29
PAX8	7849	hgsc.bcm.edu;broad.mit.edu	37	2	114002201	114002201	+	Splice_Site	SNP	C	C	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TCTCGTAGTACCTACTCCAAT	0.552	32	124
HRH1	3269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	11301013	11301013	+	Missense_Mutation	SNP	G	G	A	rs139664451	byFrequency	TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TCACTGGGCCGTCCTCTCTGC	0.552	94	113
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52651430	52651430	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TAATAATCAGGATAGTCCTTT	0.363	23	38
BRD2	6046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	32947789	32947789	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GGAGCCCTCTTTACGTGATTC	0.483	14	35
PACSIN1	29993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	34498365	34498365	+	Splice_Site	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	ACCGCGGCAGGTGAGTGCCTC	0.582	9	11
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	76024624	76024624	+	Silent	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GAGAAAACCTCGAAGCCTTGT	0.418	60	88
HACE1	57531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	105232863	105232863	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TTCTTACCCCGGAGGCATCTG	0.348	23	46
EGFR	1956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	55221710	55221710	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	ATAGGTCTGCCGCAAATTCCG	0.582	46	156
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	70231260	70231260	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	agcacacCTTCACGCCGTTCC	0.657	16	18
STAG3	10734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	99795727	99795727	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TGGTTTCCATGGTCATGGACA	0.463	29	64
CUL1	8454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	148451085	148451085	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TATAACTACTGTACTAGTGTT	0.403	15	24
LETM2	137994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	38250441	38250441	+	Silent	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TTTGGATTGACGCCAAAGTTG	0.393	22	48
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	88885200	88885200	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TAGCAGTCCTGGCCCACGGCC	0.572	19	38
SLC45A4	57210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	142228890	142228890	+	Silent	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CCTCGTCTGGGAAGGCAGGGA	0.677	32	100
SECISBP2	79048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	91954798	91954798	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GAATTTCCCAACCTGGCAGTT	0.398	13	91
ACE2	59272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	15580079	15580079	+	Silent	SNP	T	T	C			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GATTATTTTCTCCTTTGCTAA	0.323	44	79
FAM47C	442444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	37027911	37027911	+	Silent	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	ATCTCTGCCCGGAGCCTCCAG	0.622	21	39
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	49088176	49088176	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CCGTCGCAGAGGATTGGCCAG	0.602	14	42
NLGN3	54413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	70389237	70389237	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	ACCAAGGGTCCGAGATCATTA	0.527	5	11
BTK	695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	100613413	100613413	+	Silent	SNP	C	C	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GACGTATCACCCCTTGAGGGT	0.473	42	73
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	135405491	135405491	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	AGTTAGTTGGGAAGAAGACGT	0.438	35	138
SPANXN1	494118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	144337223	144337223	+	Silent	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	ACTTAGCCCCCGAACCGAGTT	0.403	35	57
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	154065952	154065952	+	Nonsense_Mutation	SNP	G	G	A	rs137852354		TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GGGTGAATTCGAAGGTAGCGA	0.527	8	24
PPM1J	333926	broad.mit.edu;ucsc.edu	37	1	113252867	113252867	+	Missense_Mutation	SNP	C	C	T	rs113935705	byFrequency	TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	GTTGGGGAGACGCCAGCCACG	0.622	34	67
MYOCD	93649	broad.mit.edu;ucsc.edu	37	17	12656007	12656007	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CCTGTCAGTCGCTGGGTCCCT	0.627	24	47
TTC3	7267	broad.mit.edu;ucsc.edu	37	21	38536430	38536430	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TTCGAAGCTCTCTATGACCAA	0.398	14	59
PLCG1	5335	broad.mit.edu;ucsc.edu	37	20	39802384	39802384	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CGTGGTGTATGAGGAAGACAT	0.517	12	109
C10orf71	0	broad.mit.edu;ucsc.edu	37	10	50531225	50531225	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	AGCTACCAGCCAGGCAGGAAG	0.547	5	11
USE1	55850	broad.mit.edu;ucsc.edu	37	19	17327047	17327047	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CACAGCCAGAGAGCGAGTGCC	0.607	17	21
SLC35F1	222553	broad.mit.edu;ucsc.edu	37	6	118635328	118635328	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TTGTGGACTTACCGACCACAG	0.597	31	56
NRD1	4898	broad.mit.edu;ucsc.edu	37	1	52301821	52301821	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	AAAAAGTGTGCCAGCCCCGGC	0.418	3	33
KLRAP1	10748	broad.mit.edu;ucsc.edu	37	12	10746526	10746526	+	RNA	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CTGTTTACATCCCTTCCAGTC	0.363	12	59
SLC9A6	10479	broad.mit.edu;ucsc.edu	37	X	135112296	135112296	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TTTAGGGTTGGTGTTGATTCA	0.358	22	74
SLAMF7	57823	broad.mit.edu;ucsc.edu	37	1	160719612	160719612	+	Splice_Site	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CTCTCACAGAGCACCTGTCAA	0.493	54	93
GPR115	221393	broad.mit.edu;ucsc.edu	37	6	47680159	47680159	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TCTAGACTTTCGAGCTCCAGA	0.423	51	120
POLR2G	5436	broad.mit.edu;ucsc.edu	37	11	62530370	62530370	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CACCACCATTGACAATATTGG	0.468	35	66
AIM2	9447	broad.mit.edu;hgsc.bcm.edu	37	1	159032502	159032504	+	In_Frame_Del	DEL	TAA	TAA	-			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TTTTTGGCCTTAATAACCTGGAT	0.399	17	54
ATRX	546	ucsc.edu	37	X	76764056	76764056	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	TGCTGATTGTACTGCTGCTGG	0.413	88	152
EGFR	1956	broad.mit.edu	37	7	55268101	55268101	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-5852-01A-11D-1705-08	TCGA-DU-5852-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c81bf20-05e8-4fae-8585-c192e8084231	f1c56802-8ab9-48c7-856a-af4aac8aebe7	CTACCTTGTCATTCAGGTACA	0.517	25	1274
