Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
TRIM51	84767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55655604	55655604	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	GGAAAGGCTGCGAAAGGAGGG	0.433	22	42
PRICKLE1	144165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	42858963	42858963	+	Silent	SNP	A	A	G			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	GAAGGAAGGGACATCCCAACA	0.522	19	27
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578394	7578394	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	GCAGCGCTCATGGTGGGGGCA	0.642	45	15
PSMD12	5718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	65341917	65341917	+	Silent	SNP	T	T	A			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	GAACCAAATCTGACTGTTCAT	0.358	27	38
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	21425086	21425086	+	Silent	SNP	T	T	G			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	GCTTTTACCTTGAGTGAGTAT	0.493	16	20
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	8421423	8421423	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	GGGGCTGGGGATGCTCGGGGA	0.627	23	39
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	19166820	19166820	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	GCCCCCAGCCGAGCGAACTAT	0.647	26	45
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	103380351	103380351	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	TTTCTCTCCTCTTTCTCCTTT	0.453	12	22
PIAS3	10401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	145585437	145585437	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	GACCCCTTCTCACTTTCTGGG	0.637	52	55
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	62067511	62067511	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	CGAATATAATCCTCAACACAA	0.408	68	118
BUB1	699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	111423902	111423902	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	TGATGCAACTTCTTATGAAGT	0.428	12	25
WDR33	55339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	128522748	128522748	+	Splice_Site	SNP	C	C	G			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	TTATCATTACCTGTAATATTG	0.398	13	13
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	ATAAGCATGACGACCTATGAT	0.393	32	47
SPP2	6694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	234969077	234969077	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	GTGCATGCTCGCTGCAGCTGG	0.577	23	40
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	239976491	239976491	+	Silent	SNP	G	G	A			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	CGTTTGCATTGGGTCTTTGCT	0.507	37	70
PROS1	5627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	93624931	93624931	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	TTTCCATCTTTGCAGCTCATA	0.408	69	107
PLCH1	23007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	155200741	155200741	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	ATCTTTGTGGAGCAGAGCACT	0.453	28	53
SPATA16	83893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	172631478	172631478	+	Silent	SNP	A	A	G			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	ACACACGTTCATTATTGTTTC	0.373	26	40
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	98545941	98545941	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	GTCATGAAAACGGAGCGGGCG	0.498	34	84
CRYGN	155051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	151135095	151135095	+	Missense_Mutation	SNP	C	C	T	rs148445096		TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	TCCTACAGGCCGACAGGAGCC	0.627	27	34
CA9	768	hgsc.bcm.edu;ucsc.edu	37	9	35674208	35674208	+	Silent	SNP	T	T	C	rs137897809	by1000genomes	TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	AGGATCTACCTGGAGAGGAGG	0.542	7	15
RORB	6096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	77257427	77257427	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	ggcagcagcagAGTGGGGAGG	0.592	11	38
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	135205145	135205145	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	GCAGGAGAGATTTTACATGCA	0.353	28	38
CCDC160	347475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	133379653	133379653	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	GGCAAAGATCCGCGGAGAGCT	0.383	9	13
PLXNA3	55558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	153688767	153688767	+	Missense_Mutation	SNP	A	A	G	rs142949704		TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	CCCGCCCCCCAGCATGCGCGT	0.672	10	15
ZNF451	26036	broad.mit.edu;ucsc.edu	37	6	57012701	57012701	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	GGGGTAAATGGCAATGCCGGA	0.418	40	58
CPO	130749	broad.mit.edu;ucsc.edu	37	2	207814342	207814342	+	Splice_Site	SNP	T	T	C			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	CCTTTGCAGATCCTTAGCCCA	0.473	25	41
AKAP4	8852	broad.mit.edu;ucsc.edu	37	X	49957597	49957597	+	Silent	SNP	A	A	G			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	CACTTTGGCCACCTCCACACT	0.488	31	66
ATRX	546	broad.mit.edu;ucsc.edu	37	X	76813106	76813106	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	AATCTTATCTTCCATGGTTCC	0.338	35	65
COL1A2	1278	broad.mit.edu;ucsc.edu	37	7	94057712	94057712	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5872-01A-11D-1705-08	TCGA-DU-5872-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d597128b-776d-4925-908d-e5e1e4b18f8b	ded34f93-720b-42b6-8a5c-680d6beab0e7	TGAAAACATCCCAGCCAAGAA	0.488	34	100
