Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
SLCO1B1	10599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	21329781	21329781	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	ACTTGTTTAATTAATCAAATT	0.274	39	43
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	102508452	102508452	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	GATCACTTCAATTGCAATCGG	0.537	12	18
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	31419095	31419095	+	Silent	SNP	C	C	T			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	AGGTGGGACACGCTTTCCAGG	0.617	17	21
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7574018	7574018	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	ATCTCGAAGCGCTCACGCCCA	0.522	20	8
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	76116777	76116777	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	AACATGAGGACGAAGTCCATC	0.637	29	109
CEACAM5	1048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42224879	42224879	+	Silent	SNP	G	G	A			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	CCCCAGACTCGTCTTACCTTT	0.547	45	69
DHDDS	79947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	26772898	26772898	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	TGCACAAGCTGTACAGGCCAC	0.517	46	92
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	46929726	46929726	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	TGTTGGACTTGTTGGTGACAT	0.592	82	103
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	T	rs121913499		TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	TAAGCATGACGACCTATGATG	0.398	28	53
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	20490510	20490510	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	CTTCGCCAAAGGCCTCGGGTT	0.498	35	180
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	129419503	129419503	+	Silent	SNP	T	T	C			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	ATGCCAAAGATGATGAGGTCA	0.443	9	64
TNFAIP3	7128	hgsc.bcm.edu;broad.mit.edu	37	6	138199814	138199814	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	TCAGAGAGGCGGCAAAAGAAT	0.557	7	84
ENPP2	5168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	120596283	120596283	+	Silent	SNP	A	A	G			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	AAACATCCAAAGGTTTCCTAA	0.348	66	63
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	138657002	138657002	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	ACCTTCTCATGGACTTCCTGA	0.642	11	98
CXorf23	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	19983583	19983583	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	AGCTTAGGACGTTTGTGACGA	0.458	41	36
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu	37	X	48682452	48682452	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	AATCCAAGAGAATTGGGTGTG	0.592	6	50
GLUD2	2747	hgsc.bcm.edu;broad.mit.edu	37	X	120182836	120182836	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	TTGAATGCTGGAGGAGTGACA	0.418	22	214
ZFYVE26	23503	broad.mit.edu;ucsc.edu	37	14	68251787	68251787	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	AGGCTCAGAGCTCAAACTTTG	0.502	75	111
MAP2K3	5606	broad.mit.edu;ucsc.edu	37	17	21217496	21217496	+	Missense_Mutation	SNP	C	C	T	rs35755743		TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	ACCAAGAAGACGGACATTGCT	0.617	65	317
LPAR4	2846	broad.mit.edu;ucsc.edu	37	X	78010568	78010568	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	CTGTTTCCGCATGAAAATGAG	0.358	50	260
PTCD1	26024	broad.mit.edu;ucsc.edu	37	7	99026819	99026819	+	Silent	SNP	G	G	A			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	GCCCTTTGTGGATGATTTCCT	0.557	10	92
XPO6	23214	broad.mit.edu;ucsc.edu	37	16	28137080	28137080	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	TCGGCCAGGCGGCCCACGGCC	0.582	29	117
ESCO2	157570	broad.mit.edu;hgsc.bcm.edu	37	8	27634263	27634266	+	Frame_Shift_Del	DEL	TAAG	TAAG	-			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	GTTTAACTGCTAAGTATCAACCAA	0.353	23	38
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76939673	76939674	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DU-6401-01A-11D-1705-08	TCGA-DU-6401-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3a81f733-b3a3-4578-b925-a663612bc92c	194434ed-46e0-4ce9-9f8f-38593d2d09c7	GTCTCAATCAGTTTTTTTGCCT	0.366	52	94
