Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	89692835	89692835	+	Missense_Mutation	SNP	G	G	T	rs57374291		TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	CTTTTGTGAAGATCTTGACCA	0.368	25	48
MS4A6E	245802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	60107365	60107365	+	Silent	SNP	T	T	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	TGCTGGTTTCTACTGTGTTGG	0.493	76	200
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	108381685	108381685	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	CCAAGCTGTAGTTTATGCAAT	0.433	8	30
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	108382533	108382533	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	AACAGAAAACGTACTAGTCGT	0.373	24	99
FZD10	11211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	130648631	130648631	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	CGAGCTCACCGGGGTCTGCTA	0.647	18	43
TICRR	90381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	90167424	90167424	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	TCCAAAAAGACCAGGGAATTC	0.453	43	94
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	18053797	18053797	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	AGGCCAGCCCGGTGGAGGCAG	0.617	10	44
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	29663747	29663747	+	Nonsense_Mutation	SNP	T	T	G			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	ATTGCTATTTTAGCACGCTAC	0.408	23	61
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	14763803	14763803	+	Silent	SNP	G	G	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	TGGAGGGAACGTCTGCCAAAA	0.478	8	14
NEDD4L	23327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	56008358	56008358	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	TACTATGTCAATCATAACAAT	0.478	4	7
CD70	970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	6590911	6590911	+	Missense_Mutation	SNP	C	C	T	rs148772362		TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	ATGCACACCACGAGGCAGATC	0.627	32	62
UBE2M	9040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	59068093	59068093	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	GAGGTCAATGTTGGGGTGATA	0.582	18	35
PRAMEF4	400735	hgsc.bcm.edu;broad.mit.edu	37	1	12941802	12941802	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	TCTGGGGAAACGTAGCGAGAG	0.488	83	239
TCHH	7062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	152082385	152082385	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	CCGCTCCTGGCGCCTTCTCTT	0.612	22	48
CD1E	913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	158324220	158324220	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	GCTGTCCTTCCGCATGCTCCA	0.542	29	90
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	237777663	237777663	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	AGAACAAAAAACACGGCCTTC	0.517	12	22
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	58349322	58349322	+	Silent	SNP	G	G	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	AAAGTAAAGGGTCTCCAAAGA	0.527	14	34
LRRC3	81543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	45877263	45877263	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	TCTGCCCAGCGCCCCCGCCTC	0.652	13	33
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	32013006	32013006	+	Missense_Mutation	SNP	G	G	C	rs143349198	by1000genomes	TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	CCTTGAGGCTGAACTTGAGGA	0.567	19	31
DEPDC5	9681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	32302244	32302244	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	AGGGCAGCAGCGGCGGCGGCG	0.607	14	33
PDIA6	10130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	10929977	10929977	+	Silent	SNP	G	G	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	CAGGAGACTCGCCTTTCTGAA	0.423	24	65
KCNS3	3790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	18113581	18113581	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	TCATGAGCTACCTTACTTTAA	0.453	34	69
CLHC1	130162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	55404777	55404777	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	AGCTTAATGCCAACTTTTTTC	0.353	17	48
B3GNT7	93010	hgsc.bcm.edu;broad.mit.edu	37	2	232263412	232263412	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	GATCGACGACGTCTTTCTGGG	0.672	18	39
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	233681681	233681681	+	Missense_Mutation	SNP	G	G	A	rs149585458		TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	GAAATTCTTCGGCGACAGCAG	0.488	67	108
PROM1	8842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	15991422	15991422	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	ATCTCTTTTCAGGGAGTTCCT	0.413	6	7
CCKAR	886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	26483467	26483467	+	Silent	SNP	G	G	A	rs150897748		TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	AGGAGGAGGTGTAGGACAGGA	0.627	20	93
MUC7	4589	hgsc.bcm.edu;ucsc.edu	37	4	71347577	71347577	+	Silent	SNP	C	C	T	rs41424846	byFrequency	TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	GAATTATTGACGACATGGTGG	0.338	19	52
PPEF2	5470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	76812812	76812812	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	GTCGTTGTGGCTGCTGGGGAT	0.522	99	224
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	126239159	126239159	+	Silent	SNP	C	C	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	ATAGCGGCCTCGTGACCACTG	0.547	16	34
MARCH11	441061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	16067657	16067657	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	CTCATCCGATTGAACAGGTGC	0.478	45	124
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140176070	140176070	+	Silent	SNP	C	C	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	TGTCGAGCTACGTTTCGGTGC	0.682	13	43
PCDHB2	56133	hgsc.bcm.edu;broad.mit.edu	37	5	140475880	140475880	+	Silent	SNP	C	C	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	ACCTGCCCCTCGCCTCCCTGG	0.692	15	116
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	51882309	51882309	+	Silent	SNP	C	C	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	GGTAAGGCCACGATTCAAGCA	0.512	26	110
DDC	1644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	50611629	50611629	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	GTCCTCAAACGTGTCTGGCTC	0.557	38	166
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	86415593	86415593	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	AACCTGCTGCGGCTCTTCCAG	0.522	69	257
SLC26A3	1811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	107423751	107423751	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	CAATCTCCTACGGTGTTTTGG	0.418	21	79
BRAF	673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	140453154	140453154	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	TAGACCAAAATCACCTATTTT	0.373	22	90
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	90301560	90301560	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	CCAAAGGGATGCTGGAGGTGT	0.577	10	11
MUM1L1	139221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	105449891	105449891	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	ATGCTTGTTAGCATCTTCAGA	0.413	14	6
HTR3C	170572	broad.mit.edu;ucsc.edu	37	3	183774718	183774718	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	CAGTGAAGGTCGAATTAAGTA	0.478	39	104
CLEC12A	160364	broad.mit.edu;ucsc.edu	37	12	10124176	10124176	+	Splice_Site	SNP	A	A	G			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	CTTTGTCAAGATTTCTTTACA	0.318	19	32
UGT2B17	7367	broad.mit.edu;ucsc.edu	37	4	69434170	69434170	+	Silent	SNP	C	C	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	TGAGCTGCATCAGCAGAAAGA	0.423	47	307
COBLL1	22837	broad.mit.edu;ucsc.edu	37	2	165578649	165578649	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	CTGGATGTGTGCAAGGTCTTG	0.488	21	58
RPSAP52	204010	broad.mit.edu;ucsc.edu	37	12	66152273	66152273	+	RNA	SNP	T	T	G			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	TCTGACCCACTGAGGGAGCTC	0.498	5	11
RPL10L	140801	broad.mit.edu;ucsc.edu	37	14	47120403	47120403	+	Silent	SNP	G	G	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	CTTCAAATTCGTCAGCATTAA	0.517	27	78
ACSM2A	123876	broad.mit.edu;ucsc.edu	37	16	20476848	20476848	+	Nonsense_Mutation	SNP	C	C	T	rs146541514		TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	GGCTGGCAAGCGACTCCCAAG	0.517	6	23
SDK2	54549	broad.mit.edu;ucsc.edu	37	17	71410870	71410870	+	Silent	SNP	G	G	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	TGGCTTCCGCGTGCACATTGC	0.597	16	26
NF1	4763	broad.mit.edu;hgsc.bcm.edu	37	17	29548901	29548901	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	AGATAGCATTGATTTGTGGAA	0.289	23	44
