Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	105793848	105793848	+	Silent	SNP	A	A	G	rs147001132	byFrequency	TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TGTCAGTGCCATAGGGACCCC	0.617	4	5
OR5AP2	338675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	56409492	56409492	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	CTCCCAGACACGAGAACTGGG	0.488	13	37
PRCP	5547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	82571020	82571020	+	Splice_Site	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TGCACATACCGTGTTATTACA	0.353	10	34
ESAM	90952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	124624651	124624651	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	AAAGACCCACGGATGACATCT	0.478	36	68
TUBGCP5	114791	hgsc.bcm.edu;broad.mit.edu	37	15	22835954	22835954	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	CACAAAATAGAAAAAACAATC	0.313	57	98
DUOX2	50506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	45401122	45401122	+	Silent	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	AGTCTGTACGGGAGAATTTGC	0.557	14	46
MYH11	4629	hgsc.bcm.edu;broad.mit.edu	37	16	15839063	15839063	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	ACCTTCATGGCGGTCAGCTGC	0.617	24	43
DVL2	1856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7130442	7130442	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TCTCCGAAGACGTAATAGCAC	0.587	37	72
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	12620681	12620681	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TTCCCTGAAGCGCAAAGCCAG	0.398	6	15
ATP8B3	148229	hgsc.bcm.edu;broad.mit.edu	37	19	1785228	1785228	+	Silent	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TCATGATGGCGTAGAAACCAA	0.597	5	8
WDR63	126820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	85546977	85546977	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TTTAACTGCCGAATAGATGAA	0.368	42	72
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	118558706	118558706	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	CCAGGTGCCTATGTGAACCTC	0.468	26	54
FLG	2312	hgsc.bcm.edu;broad.mit.edu	37	1	152279767	152279767	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	ATGGTGACGCGACCCTGAGTG	0.597	113	238
OR6K3	391114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	158687191	158687191	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	CCTGCACAGGTAGAAAAAGCC	0.453	26	33
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	176863937	176863937	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TCTCTTTCCCGCTCCTCAGAC	0.532	60	105
AGBL5	60509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	27278054	27278054	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	CCAAACCCTCCGTCGCCTCTT	0.557	42	79
PSD4	23550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	113950108	113950108	+	Missense_Mutation	SNP	C	C	T	rs117870995	by1000genomes	TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	CTTGGCCTCACGCCTCTATCG	0.597	23	50
PDE11A	50940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	178936632	178936632	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	ATTCACTCTCGATTCCAGCAG	0.537	37	66
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	238277603	238277603	+	Silent	SNP	G	G	A	rs115551245	by1000genomes	TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GCCGTATGGCGTCCAGCACCG	0.557	17	24
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	77614192	77614192	+	Silent	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	CCAATACAATCTACTTATTCA	0.507	15	44
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	164730794	164730794	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TCCGTTAGAGTTTTATCTATT	0.328	25	77
SENP5	205564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	196654715	196654715	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	AAATAGACCTGAATTTCTTCA	0.413	26	27
TLR6	10333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	38830190	38830190	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TTTCAATGTCGTTTTAGAATA	0.323	11	25
SNCA	6622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	90743488	90743488	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TGTCACACCCGTCACCACTGC	0.502	15	25
NDST3	9348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	119064828	119064828	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	CTTCACTGTCGTCCTCAACCC	0.428	15	36
PRSS12	8492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	119216148	119216148	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GAGCGTAGCCCCGCAGAGGAG	0.532	12	17
RAPGEF6	51735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	130766884	130766884	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GTTTGGAAGGCTTTGGAAGTT	0.443	22	67
PCDHGB4	8641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140769049	140769049	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	CTGCAGGCCCGCGACCAGGGC	0.677	23	19
GRIA1	2890	hgsc.bcm.edu;ucsc.edu	37	5	153174271	153174271	+	Silent	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	AGGGCGAGTGCGGCAGCGGGG	0.458	10	28
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	156589604	156589604	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	ACGATATCTACCTCTCTGTCA	0.483	61	156
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	51889804	51889804	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GACGTGGTGTTCTGTCCTCTC	0.498	28	70
CHN2	1124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	29535576	29535576	+	Silent	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	AGGTCCACACGTTCCGAGGCC	0.483	29	51
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	43581598	43581598	+	Splice_Site	SNP	G	G	C			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TTTTGGACAGGTTTGTGTGAC	0.368	27	148
WBSCR17	64409	hgsc.bcm.edu;broad.mit.edu	37	7	70597851	70597851	+	Silent	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TAGCCGGCTTCGTGCTCTTCC	0.672	3	20
HGF	3082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	81339500	81339500	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	ATGTTTGTTCGTGTTGGAATC	0.348	19	86
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	142563850	142563850	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TGTGAAGGCCGCCAGGAACCT	0.637	7	8
OR2A5	393046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	143747664	143747664	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	CTGCACACCCCCATGTACTTC	0.502	42	79
ABCF2	10061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	150921894	150921894	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GCCATAACGACGGCCTGAGTT	0.463	14	43
GRHL2	79977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	102585973	102585973	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	ACCTACCTCAACAAAGGACAG	0.522	16	28
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	135798758	135798758	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GCACCATGATGACAGACGGCC	0.433	17	38
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	18912471	18912471	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TGCGGCACGCGGTTCAGCACC	0.602	20	43
CYBB	1536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	37660587	37660587	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TCAACAGAAGGTGGTCATCAC	0.418	95	168
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	39933842	39933842	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TGGGGACCGACGTAGTGAGGT	0.612	7	20
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	39933843	39933843	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GGGGACCGACGTAGTGAGGTG	0.607	7	20
PCDH19	57526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	99662058	99662058	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GTAGATGTCGCCTGAGTTGGG	0.587	39	66
SLC25A53	401612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	103349186	103349186	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GGCAGAGGCCCACAGGCTTGG	0.532	16	32
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	148069037	148069037	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	AATGTGTTACGGGGCTATGAA	0.483	40	103
L1CAM	3897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	153133300	153133300	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	CAGGACACGCGCACCTGGCTC	0.667	26	67
SLC35F3	148641	broad.mit.edu;ucsc.edu	37	1	234041399	234041399	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GTCGCGCTCCGTGGAGGATCT	0.642	25	41
MT1HL1	645745	broad.mit.edu;ucsc.edu	37	1	237167625	237167625	+	Silent	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TGCAGGAGCCGGCGCAGGCGT	0.627	8	19
MIR548I2	100302277	broad.mit.edu;ucsc.edu	37	4	9557805	9557805	+	RNA	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GGATCAGGGACGAACTTTGTT	0.383	58	126
HRNR	388697	broad.mit.edu;ucsc.edu	37	1	152192866	152192866	+	Silent	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TGTGTTGGCCGCGGCCTGAAG	0.632	6	20
TFDP3	51270	broad.mit.edu;ucsc.edu	37	X	132351926	132351926	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	CCTCTGCACCGTCTCCCAGAC	0.592	36	85
LBH	81606	broad.mit.edu;ucsc.edu	37	2	30457270	30457270	+	Splice_Site	SNP	G	G	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TTTCTTGGCAGCCCCGACTAT	0.542	22	43
PCLO	27445	broad.mit.edu;ucsc.edu	37	7	82785657	82785657	+	Silent	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GCCCAGGGTCCGGGGGTCTTC	0.418	15	37
MPPED1	758	broad.mit.edu;ucsc.edu	37	22	43870690	43870690	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GTTCATGGCCGACCTCATCAA	0.542	33	83
DLGAP5	9787	broad.mit.edu;ucsc.edu	37	14	55619340	55619340	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GGTAATCCAGGACACTGAGCA	0.323	4	17
CXXC11	285093	broad.mit.edu;ucsc.edu	37	2	242814228	242814228	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TTCCCCGCCACGGCCTGGGGT	0.677	6	6
CYP4F3	4051	broad.mit.edu;ucsc.edu	37	19	15770103	15770103	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	GCGCTTCCGCGTCCTGCCTGA	0.672	8	19
PSME4	23198	broad.mit.edu;hgsc.bcm.edu	37	2	54123990	54123990	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TTTTTAGCTGTTTAAGGATAC	0.348	74	172
TEX33	339669	broad.mit.edu;hgsc.bcm.edu	37	22	37387528	37387528	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DU-6403-01A-11D-1705-08	TCGA-DU-6403-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d48a626-5f15-4f2d-8ca9-947b7d39146a	1ae82b76-b781-4d6e-a0da-ba341056fe11	TTACCCAGATCATCCGTCTTC	0.542	38	85
