Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
CAMK1D	57118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	12803041	12803041	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	CTTGGACGCCGTGTACTATCT	0.577	13	23
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu	37	10	26359114	26359114	+	Silent	SNP	T	T	C			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	ACTTAGGATATCAATCTATGA	0.318	4	75
HPS1	3257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	100185433	100185433	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	TGGAGAAGCCATCCATCAGCT	0.692	15	25
CBX5	23468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	54635636	54635636	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	AATTTGTGGACATTTCACATT	0.398	45	72
MIPEP	4285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	24444199	24444199	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	ATGATATGATCCCCAGCAGAT	0.393	54	62
ZDHHC7	55625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	85010046	85010046	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	TGAGGGGGGCCCCCCAAAGAC	0.572	17	24
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7579362	7579362	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	CCCAGACGGAAACCGTAGCTG	0.612	54	7
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	35640173	35640173	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	CTCACCTGCATTGGCTTTAAG	0.408	15	45
HNF1B	6928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	36059196	36059196	+	Silent	SNP	G	G	A			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	GCTTGTGTGCGTACACTGGAG	0.532	7	43
FPGT	8790	hgsc.bcm.edu;ucsc.edu	37	1	74670899	74670899	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	TAGTATCTTTCCAGATATACC	0.388	11	68
USP25	29761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	17246819	17246819	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	AGAATTGATATCACATTATAG	0.328	34	182
CYP26B1	56603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	72359586	72359586	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	GTCCGGACACCGCCACCGAAC	0.647	20	17
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	166872165	166872165	+	Missense_Mutation	SNP	C	C	T	rs146374754		TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	GGTTCCACTACGGGCTGTTCT	0.413	54	87
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	ATAAGCATGACGACCTATGAT	0.393	24	38
LMCD1	29995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	8590439	8590439	+	Silent	SNP	C	C	T			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	AATATAAGAGCGAGGCCCTCG	0.587	34	70
FAM134B	54463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	16475174	16475174	+	Silent	SNP	C	C	T			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	CTGCTGATTGCGTCTCTTTGC	0.493	38	52
CHDC2	286464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	36091355	36091355	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	CAATTCCTTTCTCTTGAGGAA	0.433	30	64
HNRNPH2	3188	hgsc.bcm.edu;broad.mit.edu	37	X	100667035	100667035	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	GGCCTACCCTGGTCCTGCTCA	0.527	5	99
IGF2R	3482	broad.mit.edu;ucsc.edu	37	6	160501242	160501242	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	GAGAGCAGGGCGAAGCTGTGG	0.557	44	50
GATA3	2625	broad.mit.edu;ucsc.edu	37	10	8100437	8100437	+	Silent	SNP	G	G	A			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	CCCCGGCCTCGTCCTCCTCCT	0.716	33	39
HELZ	9931	broad.mit.edu;ucsc.edu	37	17	65105677	65105677	+	Silent	SNP	A	A	G			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	GTGCGTGGGGAGCAGGAAGGG	0.473	43	42
PDK1	5163	broad.mit.edu;ucsc.edu	37	2	173423525	173423525	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	AGAAATAAGTCTCCTTCCAGA	0.393	30	42
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76939340	76939343	+	Frame_Shift_Del	DEL	CTAC	CTAC	-			TCGA-DU-6407-01A-13D-1705-08	TCGA-DU-6407-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee	4a5655ba-0f40-4c74-9534-23eb5df3ad4d	TGCTCACTATCTACCTGTTTTCTT	0.358	132	277
