Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR4X1	390113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	48285724	48285724	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	CCCTCCATTTCTTTGGTGGCA	0.498	33	58
OR5M9	390162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	56230846	56230846	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	CCCCAGGAGAGTAAATTCTGT	0.418	9	42
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	rs121912666		TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	AGGCGGCTCATAGGGCACCAC	0.557	28	4
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	48733300	48733300	+	Silent	SNP	C	C	T			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	CCCTGCCCTGCTACTTGCTCT	0.597	9	65
APPBP2	10513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	58556547	58556547	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	AATGAAGCATCTCATCGTGTA	0.383	33	59
PLA2G2D	26279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	20442002	20442002	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	GTACTCACAGCAGTGGATGTT	0.547	33	48
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	62586854	62586854	+	Splice_Site	SNP	G	G	A			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	TTCTTTCAGGGTAGTCAGCAG	0.493	50	87
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	175046809	175046809	+	Silent	SNP	C	C	A			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	AGAACATCATCTTCAGGCACA	0.607	28	37
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	186045567	186045567	+	Silent	SNP	A	A	T			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	TAGTTCCTCCAAGTTTTCAGA	0.378	13	22
CCDC173	129881	hgsc.bcm.edu;broad.mit.edu	37	2	170537668	170537668	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	TGGAATTATGGTGACCTGCTG	0.388	40	52
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179422678	179422678	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	GGCCTGTCTAGCACAACAATG	0.448	21	260
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	ATAAGCATGACGACCTATGAT	0.393	20	50
UGT1A6	54578	hgsc.bcm.edu;broad.mit.edu	37	2	234602346	234602346	+	Silent	SNP	C	C	T			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	ATGAAGAACTCGCATCAGCTG	0.393	13	181
SNED1	25992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	242003028	242003028	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	CGAGCTCACCCGTGCAGAAAT	0.622	5	13
WDR52	55779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	113098287	113098287	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	tcctcctGAAATTCTTTTTCT	0.453	31	57
VEGFC	7424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	177605151	177605151	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	GAAAATCCTGGCTCACAAGCC	0.418	51	56
VEGFC	7424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	177605165	177605165	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	ACAAGCCTTCTGGCGGTTCGT	0.418	51	59
DDX43	55510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	74117789	74117789	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	TCTGCAAATGAGTAACTTCGT	0.388	26	12
ABCF2	10061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	150911221	150911221	+	Silent	SNP	G	G	A			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	AAGCCAGGATGTCTCCAGGCC	0.542	26	46
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	8376664	8376664	+	Silent	SNP	C	C	T			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	TATCAAGCAGCGTTACTTGAA	0.453	16	46
P2RY6	5031	broad.mit.edu;ucsc.edu	37	11	73007739	73007739	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	CGGGCCCTGACCCGCACGGCC	0.612	53	193
TRIM48	79097	broad.mit.edu;ucsc.edu	37	11	55035824	55035824	+	Splice_Site	SNP	A	A	G			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	TTTTTTTTACAGGCTTTTGGA	0.343	31	52
CELSR3	1951	broad.mit.edu;ucsc.edu	37	3	48694173	48694173	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	CCTCCCTCGCGCCGCGCGCAG	0.726	5	7
TRPV5	56302	broad.mit.edu;ucsc.edu	37	7	142609711	142609711	+	Silent	SNP	G	G	A			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	CCATCATGGCGATGAACAAGT	0.542	15	109
CLCN6	1185	broad.mit.edu;hgsc.bcm.edu	37	1	11883807	11883810	+	Frame_Shift_Del	DEL	TGAA	TGAA	-			TCGA-DU-6542-01A-11D-1893-08	TCGA-DU-6542-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96dd5230-96ed-40d9-a861-339fdb8a9842	d6e9d687-e7e6-475b-8290-ddea4d015a92	AAATGCTATCTGAATGGCGTAAAG	0.554	29	78
