Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
RPP30	10556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	92631801	92631801	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	GGCTCTGCGCGGACTTGTGGA	0.637	69	94
SPA17	53340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	124564278	124564278	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	CACATAGCCAGAGAGGAGGCA	0.408	17	98
M6PR	4074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	9094479	9094479	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	TCCCCCACACCACGATATGCT	0.468	57	449
GPRC5D	55507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	13102595	13102595	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	GCAATGCAGACGACCGGGTCG	0.567	15	86
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	124332564	124332564	+	Silent	SNP	C	C	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	CCGGCAAAACCGAGACCACCA	0.552	57	38
COL4A2	1284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	111147702	111147702	+	Silent	SNP	C	C	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	CTGACATCCACGGAGACCCAG	0.557	12	111
NPAP1	23742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	24921762	24921762	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	CGGATGTGCCCGGCATCTTGG	0.622	12	61
GPR139	124274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	20043246	20043246	+	Silent	SNP	C	C	G			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	TGGTGCGGAACCGCTTGCTGA	0.502	21	132
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7579311	7579311	+	Splice_Site	SNP	C	C	G	rs68140816		TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	GGGCAACTGACCGTGCAAGTC	0.532	56	16
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	65105453	65105453	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	TCCCGCCTGATATGCAGGAGA	0.527	29	48
TTYH2	94015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	72246149	72246149	+	Silent	SNP	C	C	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	TTGCCGTGCCCCTCTTCTCCA	0.652	38	58
ACER1	125981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	6307219	6307219	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	CAAAGCAGACGGTCACTGATC	0.542	12	49
GPR32	2854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	51273893	51273893	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	GAGGCTGCAGTGACAGGCAAC	0.498	7	17
BSDC1	55108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	32842101	32842101	+	Silent	SNP	G	G	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	GCAGCTTTTGGGACAGGTCCT	0.597	42	63
PCIF1	63935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	44567656	44567656	+	Silent	SNP	C	C	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	ATGAGAATCACGGCAGCCCCC	0.602	14	90
APOBEC3H	164668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	39497965	39497965	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	CACGAGAAACCGCTTTCCTTC	0.537	29	9
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179613099	179613099	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	GACTGGAAGAAATTTCTTGAC	0.333	23	124
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	ATAAGCATGACGACCTATGAT	0.393	29	42
CNTN3	5067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	74419100	74419100	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	AAGAGTTTCTGGAAACTGAAC	0.333	12	68
STX19	415117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	93733522	93733522	+	Silent	SNP	A	A	G			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	TCTGTAAGTAAGCTTTCATTA	0.328	11	66
PLCH1	23007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	155198970	155198970	+	Silent	SNP	G	G	A			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	TCACTGCAGGGGTGGGTGCTG	0.577	10	68
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	166960403	166960403	+	Silent	SNP	G	G	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	ACTCTTCTGAGGTTAAGCTGT	0.368	9	20
SKP2	6502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	36152899	36152899	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	ATTCCAGACCTGAGTAGCAAC	0.517	17	50
GABRA6	2559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	161118969	161118969	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	TTTTAACTATGACCACTTTGA	0.403	10	79
DLX5	1749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	96651603	96651603	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	CTGAAAGCTGGAATAAATAGT	0.498	47	77
PAX4	5078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	127255046	127255046	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	AGCCACCACAGGGGGTGTAGC	0.582	46	71
KEL	3792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	142655011	142655011	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	TCTCAGCGTTCGGTTAAAGTT	0.522	16	42
BICD2	23299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	95481306	95481306	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	CACATGCACACGTGGTGGTAG	0.657	22	67
DBH	1621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	136501814	136501814	+	Silent	SNP	G	G	A			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	GGACCGATGGGGACACTGCCT	0.617	7	26
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	107938508	107938508	+	Silent	SNP	A	A	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	ATACAAGTGCAGGGGCAGAAG	0.488	19	58
ZNF629	23361	broad.mit.edu;ucsc.edu	37	16	30795077	30795077	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	CACCAGGTGCGAGCTCTGCGT	0.657	4	38
OLFM3	118427	broad.mit.edu;ucsc.edu	37	1	102290602	102290602	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	CATGCAGTCACGAAGTCTTGT	0.373	7	44
MUC17	140453	broad.mit.edu;ucsc.edu	37	7	100679309	100679309	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	TTCAACAACTCCTGCTGTCAC	0.473	46	257
COL14A1	7373	broad.mit.edu;ucsc.edu	37	8	121290392	121290392	+	Nonsense_Mutation	SNP	A	A	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	AACAGAATTTAAACTAAATGC	0.378	52	63
CXXC4	80319	broad.mit.edu;ucsc.edu	37	4	105412082	105412082	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	GCCAGCTCCCCCTGAGGAGGA	0.602	13	61
CCDC33	80125	broad.mit.edu;ucsc.edu	37	15	74554908	74554908	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	GGATGCAGGGCAAGAAGGTAA	0.597	4	13
ROS1	6098	broad.mit.edu;hgsc.bcm.edu	37	6	117746774	117746774	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	CAGCCAAGAGTTGCAAAATTG	0.378	60	90
METAP2	10988	broad.mit.edu;hgsc.bcm.edu	37	12	95868076	95868078	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	AAAAAGACGAAAGAAGAAGAAGA	0.557	11	45
ATRX	546	broad.mit.edu	37	X	76814313	76814313	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-7007-01A-11D-2024-08	TCGA-DU-7007-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	df228b01-461e-4a51-8c28-88879459fd88	fa26b78b-94df-41be-a392-604dc13d3b93	ATAAATAATCGTCCTCTGAAA	0.274	15	6
