Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MASTL	84930	hgsc.bcm.edu;broad.mit.edu	37	10	27459597	27459597	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	ATGAACTCTGATTCATCTTTT	0.323	4	70
TBATA	219793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	72541755	72541755	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	CTTGGCTTGCGCCCTGACTTC	0.587	40	55
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	608555	608555	+	Silent	SNP	G	G	A			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	CGAGGTCAGCGTCACCATCAG	0.662	8	21
OR52D1	390066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	5510502	5510502	+	Missense_Mutation	SNP	G	G	C	rs74379370	by1000genomes	TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	GGCATTGCCCGACTGGCCTGT	0.522	78	88
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu	37	11	22363146	22363146	+	Silent	SNP	C	C	T			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	TAGAGGTGCCCGAGAGGAAGG	0.642	4	38
CHST1	8534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	45671624	45671624	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	AGGCCGGTGGACACGGAGTTG	0.622	8	63
OR5B21	219968	hgsc.bcm.edu;broad.mit.edu	37	11	58275443	58275443	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	GAGTGGATGATCACCATCATT	0.478	7	72
CCDC153	283152	hgsc.bcm.edu;broad.mit.edu	37	11	119063944	119063944	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	ATGGCACTGGCGACTCATCTC	0.592	5	83
GNPTAB	79158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	102142925	102142925	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	CAATGTTGCTAGTACACAATG	0.338	38	108
RBM23	55147	hgsc.bcm.edu;ucsc.edu	37	14	23371258	23371258	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	GCAGCCTGGgcggcggcggca	0.557	36	62
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578265	7578265	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	TTCCACTCGGATAAGATGCTG	0.552	34	11
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	10351193	10351193	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	CTGGCGGTTGGCATGGTTCAG	0.453	80	132
ALDH3A1	218	hgsc.bcm.edu;broad.mit.edu	37	17	19641635	19641635	+	Splice_Site	SNP	C	C	T			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	CCCCCTCTCACCTTGGCCGGG	0.632	4	62
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	6707865	6707865	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	AGCCCTGCGTCGGAGAAGACA	0.682	21	44
PDCD2L	84306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	34900075	34900075	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	GAAACAGGGAAACAGCCTTGC	0.522	30	58
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	186105910	186105910	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	TACATGGTCCCGTCAAGGGCA	0.428	66	55
ADNP	23394	hgsc.bcm.edu;broad.mit.edu	37	20	49508437	49508437	+	Silent	SNP	A	A	G			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	TCAAATGAATAGTTTCGTATT	0.423	13	169
ORC4	5000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	148716409	148716409	+	Silent	SNP	G	G	A			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	CTATTTCCATGAGTTCTTTCA	0.264	17	22
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	ATAAGCATGACGACCTATGAT	0.393	28	44
B3GNT5	84002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	182987919	182987919	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	GAAGGACGTGGGGCAATGAAA	0.428	28	67
PRKAA1	5562	hgsc.bcm.edu;broad.mit.edu	37	5	40765101	40765101	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	TGGGCTTGTCGCCAAATAGAA	0.438	6	60
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	153026583	153026583	+	Missense_Mutation	SNP	G	G	A	rs138238382		TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	GGCCCTCCACGTCTGCTTCAT	0.502	14	113
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	75834890	75834890	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	AGAATCATATTGAGCATAAAC	0.413	22	30
SYBU	55638	hgsc.bcm.edu;broad.mit.edu	37	8	110655043	110655043	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	CTCAGAGAAAGGAGACTCAGA	0.552	6	92
SYBU	55638	hgsc.bcm.edu;broad.mit.edu	37	8	110655044	110655044	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	TCAGAGAAAGGAGACTCAGAG	0.552	6	93
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu	37	8	113277704	113277704	+	Silent	SNP	A	A	G			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	TTCTGGAGCCATTCAATTCCA	0.403	9	117
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	133961128	133961128	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	TCCTGGTGTGACATATGACCA	0.468	25	175
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	10085416	10085416	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	TCCACAAGCAGAGGCGGTCCC	0.672	13	34
EDA	1896	hgsc.bcm.edu;broad.mit.edu	37	X	68836453	68836453	+	Missense_Mutation	SNP	C	C	T	rs41539891		TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	CCCTGACAGCCCCATCACCAG	0.677	26	9
ACBD3	64746	broad.mit.edu;ucsc.edu	37	1	226349374	226349374	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	cgccgccttcgctcctcttcc	0.458	14	11
ZAP70	7535	broad.mit.edu;ucsc.edu	37	2	98354504	98354504	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	CAGGGCAAGCGGATGGAGTGC	0.607	3	4
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76939957	76939957	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DU-7015-01A-11D-2024-08	TCGA-DU-7015-10B-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a50aaa7-8539-4a6a-83a3-92dc92614388	9eb0f222-3de6-4ad6-b286-4c12998c1536	AATGTAGCAATACCATTGGTT	0.398	121	57
