Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
PSMC3	5702	hgsc.bcm.edu;broad.mit.edu	37	11	47444498	47444498	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	CCTTGTGGTTCATTGGCAAGA	0.592	19	238
PCNXL3	399909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	65393163	65393163	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	TGTGTGGTGATCGCCGTGCTC	0.627	13	22
GPR83	10888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	94113592	94113592	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	CATGGCAAACCAGTGGAAGGC	0.517	73	168
KRT71	112802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	52946764	52946764	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	GCTCCCTGCCCGGAAGGAGGA	0.652	19	167
FGD6	55785	hgsc.bcm.edu;broad.mit.edu	37	12	95604123	95604123	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	TTGGGAGTTGGAAATTTTGGG	0.413	12	151
PDE8A	5151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	85681058	85681058	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	TTAATGCAGCATCTTGACAAC	0.463	10	44
OR1A1	8383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	3119139	3119139	+	Silent	SNP	G	G	A	rs113780617		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	TCTTCTCATCGGTAACCATCC	0.483	20	197
OR4D2	124538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	56247641	56247641	+	Missense_Mutation	SNP	G	G	A	rs149114670		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	GCTGGATGTCGTCTGGTTCTT	0.527	18	74
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	11144121	11144121	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	CCGGCATGTTCGACCAGAAGT	0.637	26	73
ZNF91	7644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	23543197	23543197	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	TGATTAAAAGCTTTGCCACAT	0.358	6	40
GPBP1L1	60313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	46120875	46120875	+	Silent	SNP	T	T	C			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	CTGCAGTTCGTAGGGGACCAT	0.453	14	59
SOAT1	6646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	179320474	179320474	+	Silent	SNP	T	T	C			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	TCATTGTCAATGATAGTCGGA	0.408	21	208
EDEM2	55741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	33722668	33722668	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	AATCCCTGCCGTACAGGTGAC	0.542	10	58
APOBEC3B	9582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	39387537	39387537	+	Silent	SNP	C	C	T	rs144471703		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	TGCGCATCTTCGCTGCCCGCA	0.572	36	204
SMYD1	150572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	88393054	88393054	+	Silent	SNP	C	C	G			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	CAGTGAAATCCATGTTTCATA	0.493	18	83
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	ATAAGCATGACGACCTATGAT	0.393	48	50
CPS1	1373	hgsc.bcm.edu;ucsc.edu	37	2	211515094	211515094	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	CAGTGGGTCTGCTATGAATGT	0.408	8	73
RUFY4	285180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	218954072	218954072	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	ATTTTCTCGGCGGTATCCATG	0.602	6	35
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	TCCTCTCTCTGAAATCACTGA	0.333	7	45
DAB2	1601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	39381673	39381673	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	GGTTCTGAGACGGGAGGAGCA	0.542	23	106
CPEB4	80315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	173317440	173317440	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	CACCACCCACATCACCCTCAT	0.537	18	107
NKAPL	222698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	28228259	28228259	+	Silent	SNP	A	A	G			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	GAGCTCTTGCATCCTTTAACC	0.443	47	59
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	113517991	113517991	+	Silent	SNP	A	A	G			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	CAGGAAGACTAGTAGAAGCAG	0.368	111	146
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	2021511	2021511	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	GGACGACGAGGGCCTGTACAC	0.602	13	46
PRDM14	63978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	70978498	70978498	+	Silent	SNP	C	C	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	GCTGCTTCCCCGGCTCTGTGA	0.537	9	88
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	100589785	100589785	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	TTCCTAAGTGTGGCTCAAGTT	0.388	11	92
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu	37	9	139392000	139392000	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	CAGAAACAGGGGTGTCTCCTC	0.677	3	20
OTUD5	55593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	48791845	48791845	+	Silent	SNP	G	G	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	GAATGGGTTCGTCCTCGTTTT	0.507	13	130
ESX1	80712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	103499230	103499230	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	CTCCCCTTGCCATCAGCGAGG	0.602	25	239
SASH3	54440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	128914084	128914084	+	Missense_Mutation	SNP	G	G	A	rs140091268		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	ATGCTGCGCCGCAAGCCCTCC	0.577	12	31
HS3ST6	64711	broad.mit.edu;ucsc.edu	37	16	1962181	1962181	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	GTGATCTGCCCATCCAGGGTT	0.687	6	12
KRTCAP3	200634	broad.mit.edu;ucsc.edu	37	2	27666916	27666916	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	CAGAGAAGTTGGGTTTAGGAC	0.483	3	21
ITPRIPL1	150771	broad.mit.edu;ucsc.edu	37	2	96993753	96993753	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	ACGGCTGCCCCTCACGGACTG	0.567	17	87
PLCD3	113026	broad.mit.edu;ucsc.edu	37	17	43194022	43194022	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	AGCTCCTCGGGATTTGGGGAG	0.692	31	36
MRPL15	29088	broad.mit.edu;hgsc.bcm.edu	37	8	55049886	55049889	+	Frame_Shift_Del	DEL	GGTC	GGTC	-	rs144260791		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	TATTGATTTGGGTCGTGTTGATCC	0.426	28	60
TCF12	6938	broad.mit.edu;hgsc.bcm.edu	37	15	57555366	57555369	+	Frame_Shift_Del	DEL	AAAG	AAAG	-			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	GACTGAAAACAAAGAAAAGGATGA	0.382	22	28
CIC	23152	broad.mit.edu;hgsc.bcm.edu	37	19	42791372	42791373	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	ACAGTGAGACAGAGAGTGACCA	0.663	19	8
NOTCH1	4851	ucsc.edu	37	9	139412597	139412597	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	ACCCAGCGAGCACTCATCCAC	0.672	1	11
