Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
UBE4A	9354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	118239407	118239407	+	Silent	SNP	C	C	T			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	TGGATGAATTCGATTACTCTG	0.433	84	171
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	124335566	124335566	+	Silent	SNP	C	C	T			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	TGATCGTGCCCGACCTGCAGC	0.632	17	49
TBC1D4	9882	hgsc.bcm.edu;broad.mit.edu	37	13	76055900	76055900	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	CTGGGCGGCTCCATAACTCTC	0.731	5	6
OR3A2	4995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	3181606	3181606	+	Silent	SNP	G	G	A			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	CCACAGCAAAGAGCAGCAGCT	0.537	38	66
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	rs28934578		TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GTGGGGGCAGCGCCTCACAAC	0.652	57	21
WRAP53	55135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7592042	7592042	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	AGCCCATCCTTCTCCCCACGC	0.587	20	59
SUMO2	6613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	73177151	73177151	+	Splice_Site	SNP	C	C	G			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GAATTCCTCACCTGTCGTTCA	0.363	18	47
C19orf26	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	1231248	1231248	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GCCCGCTGCCGCTGGAAGTGG	0.667	34	63
NWD1	284434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	16860740	16860740	+	Silent	SNP	C	C	T			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GCAGAAACTTCGAGTCTCTCG	0.617	16	138
PVR	5817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	45153147	45153147	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	CCCATGGCCCGCTGCGTCTCC	0.612	23	144
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	47575123	47575123	+	Silent	SNP	G	G	A			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GCGGGATAGGGGGCATCATTC	0.622	15	32
LILRA1	11024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	55106273	55106273	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	CTGGATTACACGGATCCCACA	0.562	51	90
CLCNKB	1188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	16378309	16378309	+	Silent	SNP	C	C	T			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GGGGTATGCTCTGGCAGGTGA	0.622	30	54
SLC24A3	57419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	19677486	19677486	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	CGTCATCATGGGGATCACCTT	0.592	15	35
KRTAP19-2	337969	hgsc.bcm.edu;broad.mit.edu	37	21	31859568	31859568	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	CAGCCATCTCCACAGCCTCTG	0.512	8	156
KCNJ15	3772	hgsc.bcm.edu;broad.mit.edu	37	21	39671533	39671533	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	CTCACTGGGGCGTTTCTCTTT	0.493	10	113
RASL10A	10633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	29709887	29709887	+	Silent	SNP	G	G	A			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GGGCCTTCACGTAGTCGAAAC	0.652	5	39
EIF3L	51386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	38270462	38270462	+	Silent	SNP	C	C	T			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GGCTTCTCCGCCTGCACTCCC	0.552	34	38
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	196765182	196765182	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	ATCATGGCATAGTCAGGTACC	0.418	11	150
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	ATAAGCATGACGACCTATGAT	0.393	28	42
FANCD2OS	115795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	10146220	10146220	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GTTCATCGTGCGCAACTCTGA	0.532	6	55
SCN5A	6331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	38598771	38598771	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GCCTTTAAATGTTGCCTGGGA	0.498	7	36
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	57182125	57182125	+	Silent	SNP	G	G	A			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	TCACGACCTCGTCGGACAGCG	0.537	25	72
PRMT10	90826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	148594115	148594115	+	Silent	SNP	G	G	T			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	AATACCTTTCGGGAATATGTT	0.328	37	103
PRPS1L1	221823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	18067044	18067044	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GATATGATCCGCACCTGCTAT	0.473	45	77
LRRC8A	56262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	131671134	131671134	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GTGGTCACAGATGTGGGCGTG	0.572	12	29
CNKSR2	22866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	21534627	21534627	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GAAAAATTTGGTGAATGCACT	0.398	25	12
ZKSCAN2	342357	broad.mit.edu;ucsc.edu	37	16	25251836	25251836	+	Silent	SNP	G	G	A			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GATGCACAACGGCTTTCCCTA	0.473	26	51
TPR	7175	broad.mit.edu;hgsc.bcm.edu	37	1	186302356	186302358	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GGCTCAATCTGAGGATGACTCTG	0.443	24	88
SNX16	64089	broad.mit.edu;hgsc.bcm.edu	37	8	82752142	82752144	+	In_Frame_Del	DEL	CTT	CTT	-	rs142163451		TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	AAAAGAAGAACTTCTTTGATTTC	0.389	40	153
HAP1	9001	broad.mit.edu;hgsc.bcm.edu	37	17	39881249	39881249	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	CCTTCCTCAGCCGGCACCTTC	0.627	84	324
SMARCA4	6597	broad.mit.edu;hgsc.bcm.edu	37	19	11106926	11106928	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	CTCATCGACCAGAAGAAGGACAA	0.576	52	162
KCNG1	3755	broad.mit.edu;hgsc.bcm.edu	37	20	49626525	49626527	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	GGTTGCGGTCGAAGAAGAACTCG	0.645	13	49
NXF4	55999	broad.mit.edu;hgsc.bcm.edu	37	X	101818628	101818630	+	RNA	DEL	ATT	ATT	-			TCGA-DU-7019-01A-11D-2024-08	TCGA-DU-7019-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16d72485-c192-4735-97fc-e46e71bc0209	f211dabd-dc6e-4168-a894-6a2c1eeb90f8	CCTGCCTGACATTATAGAGAAGG	0.458	13	15
