Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	43597996	43597996	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	GAACCGACCCCCAGGCACCTT	0.627	23	20
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	89692830	89692830	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	AAACCCTTTTGTGAAGATCTT	0.373	48	48
EFEMP2	30008	hgsc.bcm.edu;broad.mit.edu	37	11	65635447	65635447	+	Missense_Mutation	SNP	G	G	A	rs142826827		TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	GCTCCGCTCCGAGGTGATGGT	0.627	7	108
AMICA1	120425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	118074285	118074285	+	Silent	SNP	C	C	G			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	GGAAAATGTCCCCCACCAGGT	0.507	22	136
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	103984727	103984727	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	GAGTGCCGATCCTGCGCTCTC	0.423	25	76
EFNB3	1949	hgsc.bcm.edu;broad.mit.edu	37	17	7611424	7611424	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	TCAGGGCCGGCGCTGTGAGGC	0.602	10	127
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	10214497	10214497	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	GCTTCCTGAAGATTCTTGCCA	0.443	18	53
ZNF519	162655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	14106371	14106371	+	Silent	SNP	C	C	T			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	GTATGCCTTGCTCTGGTAAAA	0.333	16	34
ICAM5	7087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	10401990	10401990	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	GCGCACACTACAGGCGCGTGG	0.682	32	63
AMPD1	270	hgsc.bcm.edu;ucsc.edu	37	1	115229523	115229523	+	Missense_Mutation	SNP	C	C	T	rs61738827	byFrequency	TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	TCCTTGGAAACGCTTTTTTCT	0.358	34	57
TMEM206	55248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	212553255	212553255	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	GAACTCCTGGAAAGAAGAGAA	0.498	36	94
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179637874	179637874	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	ATTTTCTCCCGCGTAAAATGT	0.289	13	38
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	48698353	48698353	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	GTCCTTGTCCCGGTCAGTGGC	0.607	9	32
OTOP1	133060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	4214703	4214703	+	Silent	SNP	G	G	A			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	CCAGGATGACGGTAATGACTG	0.388	18	35
FBXL7	23194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	15936897	15936897	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	CATCGCGCACTGCGGCCGGGT	0.677	4	9
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	118485663	118485663	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	TGCTAGTGGAAGCACTACCAG	0.453	17	43
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	127800434	127800434	+	Missense_Mutation	SNP	C	C	T	rs148971572	byFrequency	TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	AGCTCCAGTGCGGATGTTGGG	0.592	35	64
HIST1H2AC	8334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	26124693	26124693	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	AAGAAGACTCGCATCATCCCG	0.652	51	86
PTCHD4	442213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	47846864	47846864	+	Silent	SNP	G	G	A			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	GCAGGACACTGATGAAGTCAC	0.428	9	19
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	152783987	152783987	+	Silent	SNP	T	T	C			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	AGTCTGTGTATTCCTTCTTCA	0.433	16	68
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	157454205	157454205	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	TGGCTCAGTATGGACCTCAAC	0.463	29	40
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	121684517	121684517	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	TTGAGGCCATACTTAGTAAAG	0.393	36	97
GDF6	392255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	97157718	97157718	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	CAAACAAATACTTCTGTCTCC	0.562	15	34
PGM5	5239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	71098810	71098810	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	GATCCCAAGACGACATATTAT	0.512	11	47
OR1L8	138881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	125330525	125330525	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	TTGGGGACAACGCTTGTTGTA	0.453	23	46
MED12	9968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	70351408	70351408	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	AGAACTTGGACCAGTGGACCA	0.542	7	54
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	105011344	105011344	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	CTCCAGCCTATACCCTCTATT	0.463	35	83
ARHGEF6	9459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	135862897	135862897	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	GAGCCAGGCATGAGTCTGTTG	0.418	73	178
PIEZO2	63895	broad.mit.edu;ucsc.edu	37	18	10691245	10691245	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	AAGAGGTTGACGTAATTGTAG	0.488	38	96
OR2B3	442184	broad.mit.edu;ucsc.edu	37	6	29054524	29054524	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	TGACCACAGCGTGGCATGTTA	0.488	14	32
SGIP1	84251	broad.mit.edu;ucsc.edu	37	1	67142747	67142747	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	AGCATGGAGTCGCCAAAGTTA	0.403	28	83
ZNF429	353088	broad.mit.edu;ucsc.edu	37	19	21720782	21720782	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	TAAGAAAATTCATAGGATggg	0.458	7	54
PSG9	5678	broad.mit.edu;ucsc.edu	37	19	43766011	43766011	+	Splice_Site	SNP	C	C	T			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	AAGATACTCACGGAGGAGATT	0.522	91	166
COBL	23242	broad.mit.edu;ucsc.edu	37	7	51287614	51287614	+	Silent	SNP	T	T	G	rs145775268	by1000genomes	TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	TTCCAGGAGGTGGGGGAGCAC	0.552	5	40
MXRA5	25878	broad.mit.edu;ucsc.edu	37	X	3229518	3229518	+	Silent	SNP	C	C	T			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	CAATCTTGGCCGGTTTCATCA	0.517	32	112
RB1	5925	broad.mit.edu;hgsc.bcm.edu	37	13	48919319	48919320	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-DU-7290-01A-11D-2024-08	TCGA-DU-7290-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78e1afce-55f4-4924-9fa3-4e5227c2818c	a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62	GTTTGCACTCTTCAGCAAATTG	0.287	39	48
