Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
DCDC1	341019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	31312399	31312399	+	Splice_Site	SNP	T	T	C			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	CAACAGATGGTCTAGAAGATA	0.338	14	21
SELPLG	6404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	109017462	109017462	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	GCTTCCATGGCTGCTGGTGCA	0.622	10	42
ACIN1	22985	hgsc.bcm.edu;broad.mit.edu	37	14	23564434	23564434	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	CTCTACCCCTCGATTACCACT	0.592	8	110
GLOD4	51031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	685481	685481	+	Silent	SNP	T	T	C			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	AGTGCAGAGCTCTGCGAGCAG	0.662	5	18
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578177	7578177	+	Splice_Site	SNP	C	C	T			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	CAAACCAGACCTCAGGCGGCT	0.532	12	13
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	TCGGATAAGATGCTGAGGAGG	0.562	7	18
FBXO47	494188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	37107930	37107930	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	TCATCCCAACCTGCTGTTAAG	0.423	15	50
AIM1L	55057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	26650673	26650673	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	CCTCGTAGTACCAGATGCAGC	0.622	24	54
SLC5A9	200010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	48703490	48703490	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	CTTCCTGCTGGCCATCTTCTG	0.572	6	40
TYW3	127253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	75204387	75204387	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	GTAGCTCTGAAGAAAGCAAAT	0.383	18	20
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	216496989	216496989	+	Silent	SNP	A	A	C			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	AATTTGGTCCAGGTGTCAGGA	0.373	44	120
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	27456961	27456961	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	GGTGTGCATTCAGGTGATGCG	0.587	26	29
XDH	7498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	31588394	31588394	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	AGCATGCATCGCACAGGGCGG	0.572	44	106
ZEB2	9839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	145157730	145157730	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	CTCATTCGGCCATTTACAGAG	0.413	7	35
CNOT10	25904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	32754815	32754815	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	GCTGTCCTAGAAAAAATGATT	0.348	24	52
OR5K2	402135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	98217294	98217294	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	TCTATTTTTTTCCTATACATT	0.333	15	43
NFKBIZ	64332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	101572700	101572700	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	GGATGCAGATGGTGACACGTG	0.388	15	71
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	178936092	178936092	+	Missense_Mutation	SNP	A	A	C	rs121913274		TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	GAAATCACTGAGCAGGAGAAA	0.353	8	33
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu	37	4	66361196	66361196	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	TGGGTATAACTGTGAGGTGGA	0.463	12	124
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	131930714	131930714	+	Silent	SNP	T	T	A			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	AAGAGGAAATTGAAAAATCAT	0.368	12	72
HAVCR1	26762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	156482407	156482407	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	TTGGTCCAGACAATGCCATTT	0.478	10	28
KIF13A	63971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	17764345	17764345	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	ACATACTCATTGACAGCACAG	0.493	9	25
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	12668832	12668832	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	CCCAGAGGACAGATTATCTAC	0.413	26	74
AMER1	139285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	63410720	63410720	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	TTCCCCATCCCGTTCCACATC	0.498	12	31
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	105167163	105167163	+	Silent	SNP	C	C	T			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	ACTTGACAAACGAATGGGTAG	0.418	55	99
CNGA2	1260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	150909279	150909279	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	GAAATTTGAACTATTTGTCTT	0.527	50	145
ADAMTS19	171019	broad.mit.edu;ucsc.edu	37	5	129039955	129039955	+	Silent	SNP	C	C	A			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	GTGGCAAAGGCATACGTCATC	0.428	65	109
EIF4B	1975	broad.mit.edu;ucsc.edu	37	12	53431273	53431273	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	TCCAACTTCTAAACCTCCCAA	0.478	14	19
PRDM5	11107	broad.mit.edu;ucsc.edu	37	4	121631494	121631494	+	Silent	SNP	C	C	T			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	CTCCAGTGTGCGTCCTCTTGT	0.488	8	31
IDH1	3417	broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	ATAAGCATGACGACCTATGAT	0.393	20	51
CROCC	9696	broad.mit.edu;ucsc.edu	37	1	17250936	17250936	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	TGCCGAGCGCGATGAGCTCGC	0.652	9	25
CPVL	54504	broad.mit.edu;ucsc.edu	37	7	29134736	29134736	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	GCGTTGTGGTCCAGGGGAAGT	0.507	11	46
RIPK1	8737	broad.mit.edu;hgsc.bcm.edu	37	6	3105782	3105782	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	GAGGAGTCCTGGTTTGCTCCT	0.527	47	111
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76937745	76937745	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DU-7298-01A-11D-2024-08	TCGA-DU-7298-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f04a9dc1-2a7d-464f-9e72-92e2afe0d451	004f58de-822a-4232-8784-e3a1bc15783d	TTTTAATTACTTTTTTCTTAA	0.338	63	108
