Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
WDR96	80217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	105990414	105990414	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	TTTAGCTTCCGGTCAGAAAAA	0.423	56	71
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu	37	11	55111136	55111136	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	TTTTGTGCACTCTGTGGTTCA	0.453	11	171
NLRX1	79671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	119050958	119050958	+	Missense_Mutation	SNP	G	G	A	rs151306288		TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	GCTGGGCTGCGCACACTCCTG	0.612	96	53
CLEC9A	283420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	10215755	10215755	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	TCAAGAGAATTGTTTAAAGGA	0.368	10	114
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578524	7578524	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	TTGGCCAGTTGGCAAAACATC	0.562	82	4
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	62995074	62995074	+	Silent	SNP	A	A	G			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	CTGGAGAGTAAATTGTGTACC	0.408	44	71
CCDC19	25790	hgsc.bcm.edu;broad.mit.edu	37	1	159842834	159842834	+	Missense_Mutation	SNP	G	G	A	rs148876212	byFrequency	TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	GTGGCAATCCGGTTCTGCACT	0.597	8	109
PPFIA4	8497	hgsc.bcm.edu;broad.mit.edu	37	1	203025938	203025938	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	GGCAGCAACCCCAGCAGCAGC	0.562	4	11
CHEK2	11200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	29090043	29090043	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	TGTCTTAAGGCTTCTTCTGTC	0.488	115	168
WDR33	55339	hgsc.bcm.edu;broad.mit.edu	37	2	128477431	128477431	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	CTGAGGGCCAGGCGGGCCTTG	0.632	6	95
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	152383461	152383461	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	TTCCTGAGGGCGAGCACCGTG	0.463	7	12
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	ATAAGCATGACGACCTATGAT	0.393	44	92
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	37369109	37369109	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	TCCAAATCACATTTGGTCCAA	0.403	56	56
AMACR	23600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	33989379	33989379	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	GCGGGGGCTCACGTCCTGCTC	0.507	49	100
OR10C1	442194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	29408070	29408070	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	CACATCTCTCGCTCTGGATGT	0.587	57	82
ZNF425	155054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	148809259	148809259	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	GTATTCTTCATGTTCAACTGT	0.363	18	226
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu	37	8	35583683	35583683	+	Silent	SNP	C	C	T			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	ACTCCCTGCTCCTGAATTCTG	0.502	10	150
FBXO43	286151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	101146458	101146458	+	Silent	SNP	T	T	C			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	TCAAAACTTCTCCCCAGGGAG	0.408	65	70
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu	37	9	133942444	133942444	+	Silent	SNP	C	C	T	rs145571152	byFrequency	TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	GTAGCGGGAACGTGGACCCCA	0.647	5	43
ARHGEF1	9138	broad.mit.edu;ucsc.edu	37	19	42396179	42396179	+	Silent	SNP	C	C	T			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	ACCACAGCTTCCTGGAGAAGA	0.612	32	37
TRPC6	7225	broad.mit.edu;ucsc.edu	37	11	101375482	101375482	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	CCCCTTCTCACGGAGAACTGT	0.463	76	143
MTHFD2P1	100287639	broad.mit.edu;ucsc.edu	37	3	95374179	95374179	+	RNA	SNP	C	C	T			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	GATATTCTAACGGTGGCATCA	0.418	15	27
MEGF8	1954	broad.mit.edu;ucsc.edu	37	19	42857651	42857651	+	Silent	SNP	G	G	A			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	AACGATGCCGGCCCGGCAGCT	0.682	5	31
MAPK12	6300	broad.mit.edu;ucsc.edu	37	22	50693717	50693717	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	GCAGGGACTCGAAGTAGGGAT	0.612	63	73
PDE6C	5146	broad.mit.edu;ucsc.edu	37	10	95385365	95385365	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	CAAGCTTGGAGAAGTAGAGCC	0.413	7	47
DHX30	22907	broad.mit.edu;hgsc.bcm.edu	37	3	47888021	47888023	+	In_Frame_Del	DEL	ATC	ATC	-			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	CTGCAATGTTATCATCACCCAAC	0.65	64	166
FSTL5	56884	broad.mit.edu;hgsc.bcm.edu	37	4	162697089	162697089	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	TATTTAAACATTTGATCCACC	0.284	47	27
DHX35	60625	broad.mit.edu;hgsc.bcm.edu	37	20	37591029	37591029	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	GCCCGTGGGACCGGTGAAGTT	0.721	16	14
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76938271	76938272	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	actcatgctctttatctctttt	0.337	64	13
NOTCH1	4851	broad.mit.edu	37	9	139393364	139393365	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-DU-7301-01A-11D-2086-08	TCGA-DU-7301-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8	536cb58b-852c-491a-94f7-ffbea4c98871	GTTGTTCTGCATATCTTTGTTA	0.609	8	313
