Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
LRRC18	474354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	50122058	50122058	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	GTCACTAAGGCGCAGAATACA	0.507	25	54
CDH23	64072	hgsc.bcm.edu;broad.mit.edu	37	10	73544798	73544798	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CTGCAATGCACGCCTCACCTT	0.602	11	124
CCDC89	220388	hgsc.bcm.edu;broad.mit.edu	37	11	85397064	85397064	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CTTAAACTCCGTCTCCTCTTC	0.552	5	62
KCNJ1	3758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	128710111	128710111	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	AAGCGAGTGACGACCCATTTC	0.408	11	106
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	6128787	6128787	+	Missense_Mutation	SNP	G	G	A	rs61749370		TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	ATCGTGCAACGGCGGTTCCGA	0.612	26	51
AL021546.6	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	120894951	120894951	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	ACTCCCATCGCGTCGTGGAGG	0.478	19	37
TGM7	116179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	43584939	43584939	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	TAGGATGAAAGTTCCCAGCGG	0.478	70	97
ACSBG1	23205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	78475123	78475123	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CAACTGTTTCCAGATCTGCAT	0.463	24	40
TMEM8A	58986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	427459	427459	+	Silent	SNP	G	G	A			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	AAACGTTGACGGAGGCATTGC	0.677	14	29
CES3	23491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	66997813	66997813	+	Missense_Mutation	SNP	C	C	T	rs148620443	byFrequency	TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	AGTCCAGTACCGCCTTGGGGT	0.607	75	77
RFXANK	8625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	19307810	19307810	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	TCTCACCAACCGGCAGCGAGG	0.617	31	241
FASLG	356	hgsc.bcm.edu;broad.mit.edu	37	1	172628634	172628634	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	GTAGGATTGGGCCTGGGGATG	0.572	5	54
ADCY3	109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	25062839	25062839	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CCCCCCAGCACGGTGCCCGTG	0.642	18	132
TRIM54	57159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	27522276	27522276	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CATTTACAAACGCCAGAAGGT	0.522	16	28
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	ATAAGCATGACGACCTATGAT	0.393	41	72
FLNB	2317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	58095050	58095050	+	Splice_Site	SNP	G	G	C			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CCCCTACAGGGTAGGTTGTGA	0.552	8	13
SUMF2	25870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	56145816	56145816	+	Nonsense_Mutation	SNP	A	A	T			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CAAGGGAGACAAAGCTGAGGA	0.532	17	156
KLHL15	80311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	24006740	24006740	+	Silent	SNP	T	T	C			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CTACAGCAAATTCAGAGCGTG	0.458	103	135
SOX3	6658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	139586763	139586763	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	GCCATTTTGCGCCGCTGCCCG	0.632	39	43
FLNA	2316	hgsc.bcm.edu;broad.mit.edu	37	X	153593776	153593776	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	GTACACCTTGAAGTCAGCTGT	0.672	9	103
APOB	338	broad.mit.edu;ucsc.edu	37	2	21227213	21227213	+	Silent	SNP	G	G	A			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CGGTGCCTACGGCTGGGGAGG	0.507	38	40
KRT16P2	400578	broad.mit.edu;ucsc.edu	37	17	16734855	16734855	+	RNA	SNP	C	C	T	rs688852	by1000genomes	TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CACAGTCTGCCGCAGGGCCAG	0.632	6	53
MYH2	4620	broad.mit.edu;ucsc.edu	37	17	10432336	10432336	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CGCTGCTTCTCTGCTTTGGCC	0.582	33	74
ZNF292	23036	broad.mit.edu;hgsc.bcm.edu	37	6	87966376	87966377	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	AATTCAGAAACTCTCAAAATAG	0.356	11	28
SPDYE1	285955	broad.mit.edu;hgsc.bcm.edu	37	7	44042300	44042301	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	GTGCTCGCCCCTGAGCCTGAGG	0.614	19	50
GNAI1	2770	broad.mit.edu;hgsc.bcm.edu	37	7	79846804	79846805	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	TTGTGGTCTCTTTTAAGTTTTG	0.342	13	28
NOTCH1	4851	broad.mit.edu;hgsc.bcm.edu	37	9	139413070	139413072	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CACTCGCAGTAGAAGGAGGCCAC	0.655	10	20
ANO9	338440	broad.mit.edu;hgsc.bcm.edu	37	11	418481	418483	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CCATGCCACATCTTCTCACGCAG	0.621	51	105
CLUH	23277	broad.mit.edu;hgsc.bcm.edu	37	17	2601759	2601761	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	AGCCCAGGCTGAAGAAGATGTTG	0.611	11	48
CIC	23152	broad.mit.edu;hgsc.bcm.edu	37	19	42798099	42798100	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	GGGTCCTGTCAGAAGTGGACTT	0.678	64	73
NKX2-2	4821	broad.mit.edu;hgsc.bcm.edu	37	20	21492574	21492574	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CCAAGTCCACTGCTGGGCCTG	0.706	34	36
BCOR	54880	broad.mit.edu;hgsc.bcm.edu	37	X	39932365	39932366	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-DU-7302-01A-11D-2086-08	TCGA-DU-7302-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cda7efe2-081f-427a-b863-c894647a16cf	9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb	CCGGGATCTCCTCTCTGGTTTC	0.515	53	131
