Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	20950023	20950023	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	AAGGTCTGCCGACGTAAGTAC	0.488	34	61
SLCO1A2	6579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	21422506	21422506	+	Silent	SNP	A	A	G			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	TCAATTCATCATCTTTCAAAA	0.308	41	71
FAM124A	220108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	51825705	51825705	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	CATCGACAACGTCCTGGCGTG	0.682	9	17
TPPP2	122664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	21498757	21498757	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	TCAGAGGCAGAAAAAACATTC	0.522	4	27
PLEKHG3	26030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	65198857	65198857	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	ACCACATCAAGAGGCTCATCC	0.557	10	109
ATP6V1D	51382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	67807223	67807223	+	Missense_Mutation	SNP	C	C	T	rs144396308	byFrequency	TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	ACGTTCAATCCGGGGAATGAT	0.328	36	67
HAS3	3038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	69148261	69148261	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	CAACAAGTACGACTCATGGAT	0.557	103	160
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	GCACAAACACGCACCTCAAAG	0.542	24	19
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	7606923	7606923	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	TCTGCTGAGCCGCTGCGTCTC	0.642	37	55
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	19510670	19510670	+	Splice_Site	SNP	C	C	T			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	GACCTAAGAACTGAAAGGAAC	0.378	8	69
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu	37	1	27087503	27087503	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	GCCTGGCATCCGAGGCCCTTC	0.602	9	129
ADAM30	11085	hgsc.bcm.edu;broad.mit.edu	37	1	120437550	120437550	+	Silent	SNP	G	G	A			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	AATTCCCGTCGCAGTACTCTG	0.483	15	85
IL10	3586	hgsc.bcm.edu;ucsc.edu	37	1	206944736	206944736	+	Silent	SNP	A	A	G			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	TTTAACAACAAGTtgtccagc	0.488	9	16
CBY1	25776	hgsc.bcm.edu;broad.mit.edu	37	22	39067165	39067165	+	Missense_Mutation	SNP	G	G	A	rs140554782		TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	AATCTCTTGCGGCTGAAAGTG	0.562	8	142
DAPL1	92196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	159660849	159660849	+	Silent	SNP	A	A	G			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	CCTTGGAAAGACATACCAAAA	0.378	9	10
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	2	179592377	179592377	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	GCAAGTATACTGTCCAGTCTT	0.418	15	261
SP140	11262	hgsc.bcm.edu;broad.mit.edu	37	2	231108509	231108509	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	TTGAGCTCCTCGCCAAGGTGT	0.488	8	87
C3orf58	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	143708579	143708579	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	CCGGCTCGAGGCCTTGCTGGA	0.507	33	64
ATG5	9474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	106727551	106727551	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	TGCAATCCCATCCAGAGTTGC	0.303	23	30
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu	37	9	134501730	134501730	+	Silent	SNP	G	G	A			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	ACGGGCTAAGGTTCCAGGCCG	0.567	7	80
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu	37	9	134501807	134501807	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	GGATCATAGTGGTCTGCAGTT	0.592	8	127
MECP2	4204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	153297774	153297774	+	Silent	SNP	G	G	A			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	GGTCACGGATGATGGAGCGCC	0.617	57	14
PRNT	149830	broad.mit.edu;ucsc.edu	37	20	4713271	4713271	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	aggtggagaagatgggaaaga	0.478	7	5
IDH1	3417	broad.mit.edu;ucsc.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	C	rs121913499		TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	TAAGCATGACGACCTATGATG	0.398	38	69
PPP6R2	9701	broad.mit.edu;ucsc.edu	37	22	50875937	50875937	+	Silent	SNP	C	C	A			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	cctcccAGGCCTTCTCTGACT	0.557	4	38
AKR7L	246181	broad.mit.edu;ucsc.edu	37	1	19595113	19595113	+	RNA	SNP	T	T	G			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	GCCGAGGTCATGCTGGGAGCG	0.632	22	56
MAP3K1	4214	broad.mit.edu;ucsc.edu	37	5	56181765	56181765	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	ATAGGGGGATCGGTGGCTCAT	0.343	26	41
NR4A1	3164	broad.mit.edu;hgsc.bcm.edu	37	12	52451162	52451164	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	GGCAAGCTCATCTTCTGCTCAGG	0.611	38	76
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7579311	7579311	+	Splice_Site	DEL	C	C	-	rs68140816		TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	GGGCAACTGACCGTGCAAGTC	0.532	47	60
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76889091	76889091	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DU-7304-01A-12D-2086-08	TCGA-DU-7304-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc	b95bb15a-325a-459a-aadc-d4f68cee6a65	CTCTTGCCACTTCTCAAATTC	0.318	46	14
