Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ARMC3	219681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	23292319	23292319	+	Silent	SNP	C	C	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	ACATAATTAACGATGGATTCT	0.323	59	73
ATG16L2	89849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	72528829	72528829	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	CTCAGACCAAGTCCCATCACT	0.587	15	40
BCL9L	283149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	118772576	118772576	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	ATGGCATTCATGGGCACCTCC	0.622	14	29
WNK1	65125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	994382	994382	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	GGTCCTAAGCCTCCAGCTGTA	0.507	29	86
PSMC6	5706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	53175072	53175072	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	GAAAAGTCTGAAAATGATCTG	0.353	25	21
COPS2	9318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	49447771	49447771	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	CTCCATGTCAGACATCTTGGC	0.557	49	56
PDE8A	5151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	85610300	85610300	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	TGCAGGGCATGTGAAAAAGCA	0.383	45	41
DHX38	9785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	72132924	72132924	+	Missense_Mutation	SNP	C	C	T	rs148934675		TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	GGGTCCACCCCGCGTCTGTCC	0.617	20	36
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	72993684	72993684	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	CTCTCCTCGTCCCCCTCCTCA	0.687	23	117
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	81953235	81953235	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	CTGCGCTACCCCGTGACCCCC	0.517	28	72
METTL16	79066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	2324130	2324130	+	Silent	SNP	G	G	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	CCTTCATCACGGACGCCAGCA	0.453	104	237
ALDH4A1	8659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	19209803	19209803	+	Silent	SNP	G	G	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	TGCTGTTGGTGCTCGGGGGCA	0.647	21	97
ALDH4A1	8659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	19209838	19209838	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	TGCCCCTCCAGCTCCACCGCA	0.642	24	69
TMEM39B	55116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	32542835	32542835	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	ACCGTTCTCACGGCAACAGGC	0.592	19	187
TOR1AIP1	26092	hgsc.bcm.edu;ucsc.edu	37	1	179876983	179876983	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	CTCATGATAAGCAACCTTCAG	0.328	4	38
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	190067492	190067492	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	CGGGAAGGGTCAATAAACTCC	0.428	38	59
HSPA13	6782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	15748040	15748040	+	Silent	SNP	G	G	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	GAGTTCCTCCGCCCAAGTCTA	0.483	37	116
BCR	613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	23631729	23631729	+	Silent	SNP	C	C	G			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	CCCTGACATCCGTGGAGCTGC	0.572	24	36
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	141274478	141274478	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	TTCATCACGTCCATCCTCACA	0.328	35	97
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	196877622	196877622	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	ATCAACTAAACGTAATTTTCT	0.279	20	26
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	53837571	53837571	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	GGAATGCTACGAGGATGACAG	0.617	97	215
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	164906713	164906713	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	GCACTGGTTGGTGCCCCAATA	0.527	11	34
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	161324195	161324195	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	CCCTAATTTGGCCAGGGGCGA	0.458	44	138
EGFR	1956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	55211008	55211008	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	ACCATCCAGGAGGTGGCTGGT	0.448	32	90
SEMA3E	9723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	83119551	83119551	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	AAATCCAAAAGGGCTATGAAA	0.413	20	59
RNF19A	25897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	101287238	101287238	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	GTTCTCAAACGTAAGCTCTGG	0.418	27	77
SLC45A4	57210	hgsc.bcm.edu;broad.mit.edu	37	8	142231748	142231748	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	ATGAAGGGCCGCCGGCGGCCC	0.617	6	88
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	144945911	144945911	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	GGGCCGGCCCCGGAACTTCCC	0.677	8	17
APBA1	320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	72131516	72131516	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	CAGCTCGGGCGCGTCCCCTAT	0.721	15	17
APOO	79135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	23899066	23899066	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	GACCTCTGAATTACCTGAAAT	0.478	36	47
HLTF	6596	broad.mit.edu;ucsc.edu	37	3	148792096	148792096	+	Silent	SNP	A	A	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	TCATATGCAGAGGCATGGTAA	0.363	34	23
LUZP4	51213	broad.mit.edu;ucsc.edu	37	X	114541268	114541268	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	GAGAGATCTCGTGGCCACTGA	0.428	23	114
PGM3	5238	broad.mit.edu;ucsc.edu	37	6	83884095	83884095	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	GTTCTGACCTGGTTAAACAAG	0.383	3	7
KIF1B	23095	broad.mit.edu;ucsc.edu	37	1	10386237	10386237	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	ACTTTTTCCACGGCCGATTCC	0.572	21	250
DNAH11	8701	broad.mit.edu;ucsc.edu	37	7	21640450	21640450	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	GAAGCATTTTCTCTTGTATGG	0.438	57	160
KIF19	124602	broad.mit.edu;ucsc.edu	37	17	72343952	72343952	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	AGTGATGATCGCTCACATCAG	0.627	3	8
DCAF12L1	139170	broad.mit.edu;ucsc.edu	37	X	125686452	125686452	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	CGAGCGATACGTCGCCGGCCG	0.721	21	54
PTEN	5728	broad.mit.edu;hgsc.bcm.edu	37	10	89717715	89717716	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	CCTCAGCCGTTACCTGTGTGTG	0.406	48	56
BACH1	571	broad.mit.edu;hgsc.bcm.edu	37	21	30699512	30699513	+	Frame_Shift_Del	DEL	TA	TA	-	rs145991657		TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	TTCACAACATTAAGTTCTGTCA	0.436	29	52
