Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
LDB1	8861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	103871263	103871263	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	CTCCTTCGGCGAGTACAGCTT	0.547	43	66
PLAC1L	219990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	59812148	59812148	+	Missense_Mutation	SNP	T	T	C			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	TCCTAGGTAGTTTCTGAGGAA	0.398	28	139
TMEM109	79073	hgsc.bcm.edu;broad.mit.edu	37	11	60687346	60687346	+	Missense_Mutation	SNP	G	G	C			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	AGGTCGATCTGTGCGAGGGAC	0.542	15	266
ZW10	9183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	113628513	113628513	+	Missense_Mutation	SNP	T	T	C			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	TGGCTTTCTATCACAGCATGA	0.378	16	148
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	104049284	104049284	+	Silent	SNP	C	C	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	GTGGACCATACACCATTTTTG	0.423	60	56
TDG	6996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	104374683	104374683	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	TGGCATAAACCCGGGACTAAT	0.363	28	246
HS3ST4	9951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	26147367	26147367	+	Missense_Mutation	SNP	A	A	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	TATTTCAACAAAACCAAGGGG	0.517	21	86
APOBR	55911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	28507468	28507468	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	GCCTCAGGAGGGGACGAGGCC	0.657	16	13
CDH19	28513	hgsc.bcm.edu;broad.mit.edu	37	18	64172539	64172539	+	Splice_Site	SNP	C	C	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	AAAAATAAACCCTGATGAAGA	0.303	10	173
DOHH	83475	hgsc.bcm.edu;broad.mit.edu	37	19	3492382	3492382	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	CCCCACGTCACGCTCCTCAGC	0.746	3	3
C3	718	hgsc.bcm.edu;broad.mit.edu	37	19	6697496	6697496	+	Silent	SNP	G	G	A	rs140780068		TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	GGATGGTTACGGTCTGCTGGT	0.587	9	128
PLD3	23646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	40883897	40883897	+	Silent	SNP	C	C	G			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	CTCTAGGAACCTCCAACTGGT	0.647	23	147
HCN3	57657	hgsc.bcm.edu;broad.mit.edu	37	1	155257756	155257756	+	Silent	SNP	G	G	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	TGGTACATGCGCCCCTTCAGG	0.627	9	114
OR1C1	26188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	247920937	247920937	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	CTGAAATAGACGGCGATGGCT	0.512	54	45
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	38323471	38323471	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	CACACCATCGCCAGCGCTCAG	0.677	44	48
CLIP4	79745	hgsc.bcm.edu;broad.mit.edu	37	2	29356592	29356592	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	TTTGCGGAGTCGCTGGACAAA	0.368	8	127
CAPN13	92291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	30966407	30966407	+	Silent	SNP	C	C	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	TGTTTCTGAACGAGGAAAAAA	0.473	104	138
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	ATAAGCATGACGACCTATGAT	0.393	50	103
GRM7	2917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	7188209	7188209	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	TTCTTCTCTCGCGTGGTGCCA	0.522	39	191
KLHL18	23276	hgsc.bcm.edu;broad.mit.edu	37	3	47361235	47361235	+	Silent	SNP	C	C	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	TGATGGAGTGCAAGCAGGATG	0.493	16	296
GPR116	221395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	46826878	46826878	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	CATCACTAAGCTCTCTGCAAA	0.448	49	215
MCM9	254394	hgsc.bcm.edu;broad.mit.edu	37	6	119245149	119245149	+	Missense_Mutation	SNP	A	A	G			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	ACATGCTTGCATTTGTTACAC	0.458	27	369
SCRN1	9805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	29963705	29963705	+	Silent	SNP	G	G	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	GCTCCAGCATGGTGCTCCTCA	0.557	18	158
RNF133	168433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	122338205	122338205	+	Silent	SNP	G	G	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	AGCAAATTACGCAGCTATCCC	0.398	138	393
CEP41	95681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	130038826	130038826	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	CTGAGCGCTTCGGGCACCAGG	0.577	46	490
FAM154A	158297	hgsc.bcm.edu;broad.mit.edu	37	9	18928507	18928507	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	AAGTGCAGGTCGGCAGGACTG	0.562	10	154
SPATA31E1	286234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	90501762	90501762	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	CCTGTGCGTCGCTCCTGGCTC	0.577	27	203
ABCA2	20	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	139912486	139912486	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	TCCACCACATCGTGCCCCACA	0.662	11	50
NDOR1	27158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	140110623	140110623	+	Silent	SNP	A	A	G			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	GCCAGGGTGCATACTTCTACC	0.642	20	141
LCLAT1	253558	broad.mit.edu;ucsc.edu	37	2	30863465	30863465	+	Missense_Mutation	SNP	A	A	G			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	GCCACATTTAAATTCAAAGAA	0.343	19	157
PDE1A	5136	broad.mit.edu;ucsc.edu	37	2	183095781	183095781	+	Nonsense_Mutation	SNP	A	A	C			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	TAAACAGTTCATAAATCATAA	0.323	39	255
MIB2	142678	broad.mit.edu;ucsc.edu	37	1	1563188	1563188	+	Silent	SNP	C	C	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	TGTGTGAGCGCGGCTGTGACG	0.692	8	12
CELSR1	9620	broad.mit.edu;ucsc.edu	37	22	46929761	46929761	+	Missense_Mutation	SNP	C	C	T	rs145654024		TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	ATCTGGAAGTCGGGCAGCACA	0.607	35	359
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7577101	7577101	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	GCCGGTCTCTCCCAGGACAGG	0.547	90	19
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76907649	76907650	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	CAATACGTTTTCGTCTCTCTTC	0.386	180	59
