Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ITIH2	3698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	7786812	7786812	+	Missense_Mutation	SNP	T	T	C			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	TAAAGAGATGTCCTTTTCTGT	0.418	23	50
VCL	7414	hgsc.bcm.edu;broad.mit.edu	37	10	75834513	75834513	+	Missense_Mutation	SNP	T	T	G			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	ATGAAGATTTTTGTAACAACT	0.269	9	157
CTSC	1075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	88042410	88042410	+	Missense_Mutation	SNP	T	T	C			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	ATGTATGTAGTTGCAGTCCAA	0.388	35	50
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	1992145	1992145	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	GTCCGCCAGCGTTGAGATCTG	0.642	13	23
LPAR5	57121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	6729924	6729924	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	GTAGCGGCAACGCGAGGGCCT	0.726	5	11
BICD1	636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	32480873	32480873	+	Missense_Mutation	SNP	A	A	G	rs116296656	by1000genomes	TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	AGCATAGCCAACGAAAATCAC	0.458	29	64
COG3	83548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	46092961	46092961	+	Silent	SNP	T	T	C			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	ATAGCAACAATGCCTTGATAG	0.393	28	96
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577129	7577129	+	Missense_Mutation	SNP	A	A	G			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	ACGCACCTCAAAGCTGTTCCG	0.537	19	6
FPGT-TNNI3K	100526835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	74801804	74801804	+	Missense_Mutation	SNP	T	T	C			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	ATTGCAAAACTCTTGATGGAA	0.353	22	50
AKNAD1	254268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	109380254	109380254	+	Missense_Mutation	SNP	T	T	C			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	AGCTGAAGTATATTTGCTTTC	0.403	12	104
DCST2	127579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	155005617	155005617	+	Missense_Mutation	SNP	A	A	C			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	GGTCTGGTTCAGGGCCAGCTC	0.632	9	16
OR10J3	441911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	159284385	159284385	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	TTTGTGCTGCCGCCTGAAGCT	0.453	110	179
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	36983811	36983811	+	Splice_Site	SNP	T	T	A			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	GAGAGCAGGGTAAGAAGGTCC	0.572	8	39
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	ATAAGCATGACGACCTATGAT	0.393	36	48
SLC4A7	9497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	27444777	27444777	+	Missense_Mutation	SNP	A	A	G			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	AATATAACACACAAGGCTGCT	0.378	67	84
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52416412	52416412	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	TGTGAAGAAGGTCCTGCTCAA	0.582	92	129
KBTBD8	84541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	67054104	67054104	+	Missense_Mutation	SNP	A	A	G			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	ATTTTTGCTAAATGCATACGT	0.388	23	54
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	7520914	7520914	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	CATGCGAGACGCCATCATTGC	0.547	53	60
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	73849587	73849587	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	AGGGATGGCACGCTGGAGTAT	0.562	34	51
ALDH1B1	219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	38396046	38396046	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	TGCCTCTGAGCGGGGCCGGCT	0.647	53	97
MROH2B	133558	broad.mit.edu;ucsc.edu	37	5	41012689	41012689	+	Missense_Mutation	SNP	T	T	C			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	GTTCACCTGATCTTCCAGAGC	0.488	31	47
MYOCD	93649	broad.mit.edu;ucsc.edu	37	17	12666629	12666629	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	TCTAAAAATTGGGAGCGAAGA	0.483	12	112
HNRNPC	3183	broad.mit.edu;hgsc.bcm.edu	37	14	21679388	21679414	+	In_Frame_Del	DEL	GTCATCCTCGCCATTGGCGCTGTCTCT	GTCATCCTCGCCATTGGCGCTGTCTCT	-			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	GTGCTTAAGAGTCATCCTCGCCATTGGCGCTGTCTCTGTCATCCTCT	0.445	63	254
CDC34	997	broad.mit.edu;hgsc.bcm.edu	37	19	537058	537060	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	AGCCCAACACCTTCTCGCCCGCA	0.635	42	72
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76778848	76778849	+	Frame_Shift_Ins	INS	-	-	GTATC			TCGA-E1-5305-01A-01D-1893-08	TCGA-E1-5305-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7e66ac-e905-436d-8aee-4da7b8e1df1d	a676be18-91f6-45cd-82d5-a604293c8583	GTGTTCTTTATGTATCTGAAGG	0.386	48	53
